RNA–Protein interactions for RNA: ENST00000486741.5

HMGN1-216, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 2

Gene HMGN1, Length 4,299 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-216ENST00000486741 ZNF395Q9H8N7 513 aaPredicted RBP13.47□□□□□ -0.25
HMGN1-216ENST00000486741 ATP13A1Q9HD20 1204 aa13.47□□□□□ -0.25
HMGN1-216ENST00000486741 CD274Q9NZQ7 290 aa13.47□□□□□ -0.25
HMGN1-216ENST00000486741 NVLO15381 856 aaKnown RBP13.47□□□□□ -0.25
HMGN1-216ENST00000486741 SRP72O76094 671 aaKnown RBP13.47□□□□□ -0.25
HMGN1-216ENST00000486741 TBX18O95935 607 aa13.47□□□□□ -0.25
HMGN1-216ENST00000486741 XRCC4Q13426 336 aa13.47□□□□□ -0.25
HMGN1-216ENST00000486741 DCLRE1AQ6PJP8 1040 aa13.47□□□□□ -0.25
HMGN1-216ENST00000486741 CIR1Q86X95 450 aaPredicted RBP13.47□□□□□ -0.25
HMGN1-216ENST00000486741 C10orf107Q8IVU9 208 aa13.47□□□□□ -0.25
HMGN1-216ENST00000486741 SCUBE1Q8IWY4 988 aa13.47□□□□□ -0.25
HMGN1-216ENST00000486741 CD99L2Q8TCZ2 262 aa13.47□□□□□ -0.25
HMGN1-216ENST00000486741 USP13Q92995 863 aaPredicted RBP13.47□□□□□ -0.25
HMGN1-216ENST00000486741 NFKBIZQ9BYH8 718 aa13.47□□□□□ -0.25
HMGN1-216ENST00000486741 UBE2OQ9C0C9 1292 aaKnown RBP13.47□□□□□ -0.25
HMGN1-216ENST00000486741 ARHGAP39Q9C0H5 1083 aa13.47□□□□□ -0.25
HMGN1-216ENST00000486741 AURKCQ9UQB9 309 aa13.47□□□□□ -0.25
HMGN1-216ENST00000486741 SH3BP1Q9Y3L3 701 aa13.47□□□□□ -0.25
HMGN1-216ENST00000486741 CDK5RAP2Q96SN8 1893 aa13.47□□□□□ -0.25
HMGN1-216ENST00000486741 MYADML2A6NDP7 307 aa13.47□□□□□ -0.25
HMGN1-216ENST00000486741 PIGNO95427 931 aa13.47□□□□□ -0.25
HMGN1-216ENST00000486741 GRK2P25098 689 aa13.47□□□□□ -0.25
HMGN1-216ENST00000486741 INCA1Q0VD86 236 aa13.47□□□□□ -0.25
HMGN1-216ENST00000486741 TAF10Q12962 218 aa13.47□□□□□ -0.25
HMGN1-216ENST00000486741 UBAP2LQ14157 1087 aaKnown RBP13.47□□□□□ -0.25
HMGN1-216ENST00000486741 TCEAL1Q15170 157 aa13.47□□□□□ -0.25
HMGN1-216ENST00000486741 TEX44Q53QW1 395 aa13.47□□□□□ -0.25
HMGN1-216ENST00000486741 TCHHL1Q5QJ38 904 aaPredicted RBP13.47□□□□□ -0.25
HMGN1-216ENST00000486741 PTRHD1Q6GMV3 140 aaKnown RBP13.47□□□□□ -0.25
HMGN1-216ENST00000486741 MRNIPQ6NTE8 343 aa13.47□□□□□ -0.25
HMGN1-216ENST00000486741 LDB1Q86U70 411 aaPredicted RBP13.47□□□□□ -0.25
HMGN1-216ENST00000486741 PQLC3Q8N755 202 aa13.47□□□□□ -0.25
HMGN1-216ENST00000486741 DNAJC9Q8WXX5 260 aa13.47□□□□□ -0.25
HMGN1-216ENST00000486741 IL22Q9GZX6 179 aa13.47□□□□□ -0.25
HMGN1-216ENST00000486741 EML4Q9HC35 981 aaKnown RBP13.47□□□□□ -0.25
HMGN1-216ENST00000486741 SNX15Q9NRS6 342 aa13.47□□□□□ -0.25
HMGN1-216ENST00000486741 LGALS13Q9UHV8 139 aa13.47□□□□□ -0.25
HMGN1-216ENST00000486741 FAM50BQ9Y247 325 aa13.47□□□□□ -0.25
HMGN1-216ENST00000486741 CLUHO75153 1309 aa13.47□□□□□ -0.25
HMGN1-216ENST00000486741 SERPINF2P08697 491 aa13.46□□□□□ -0.25
HMGN1-216ENST00000486741 PURAQ00577 322 aaKnown RBP13.46□□□□□ -0.25
HMGN1-216ENST00000486741 PLD1Q13393 1074 aa13.46□□□□□ -0.25
HMGN1-216ENST00000486741 DLG2Q15700 870 aa13.46□□□□□ -0.25
HMGN1-216ENST00000486741 ZNF467Q7Z7K2 595 aaPredicted RBP13.46□□□□□ -0.25
HMGN1-216ENST00000486741 LCA5Q86VQ0 697 aa13.46□□□□□ -0.25
HMGN1-216ENST00000486741 DEFB107AQ8IZN7 70 aa13.46□□□□□ -0.25
HMGN1-216ENST00000486741 CRYBG2Q8N1P7 616 aa13.46□□□□□ -0.25
HMGN1-216ENST00000486741 QKIQ96PU8 341 aaKnown RBP eCLIP13.46□□□□□ -0.253e-41■■■■■ 75.6
HMGN1-216ENST00000486741 UPF3AQ9H1J1 476 aaKnown RBP13.46□□□□□ -0.25
HMGN1-216ENST00000486741 PNPOQ9NVS9 261 aa13.46□□□□□ -0.25
HMGN1-216ENST00000486741 ZNF358Q9NW07 568 aa13.46□□□□□ -0.25
HMGN1-216ENST00000486741 GMIPQ9P107 970 aa13.46□□□□□ -0.25
HMGN1-216ENST00000486741 MORF4L1Q9UBU8 362 aa13.46□□□□□ -0.25
HMGN1-216ENST00000486741 V9GYQ6 96 aa13.46□□□□□ -0.25
HMGN1-216ENST00000486741 FAM95CA0A1B0GW59 222 aa13.46□□□□□ -0.25
HMGN1-216ENST00000486741 MAGEB16A2A368 324 aa13.46□□□□□ -0.25
HMGN1-216ENST00000486741 SEPT4O43236 478 aa13.46□□□□□ -0.25
HMGN1-216ENST00000486741 DNAJC8O75937 253 aaPredicted RBP13.46□□□□□ -0.25
HMGN1-216ENST00000486741 ASMTLO95671 621 aa13.46□□□□□ -0.25
HMGN1-216ENST00000486741 RPL17P18621 184 aaKnown RBP13.46□□□□□ -0.25
HMGN1-216ENST00000486741 CYP3A5P20815 502 aa13.46□□□□□ -0.25
HMGN1-216ENST00000486741 PPARGP37231 505 aaPredicted RBP13.46□□□□□ -0.25
HMGN1-216ENST00000486741 INTS6LQ5JSJ4 861 aaKnown RBP13.46□□□□□ -0.25
HMGN1-216ENST00000486741 GALNT4Q8N4A0 578 aa13.46□□□□□ -0.25
HMGN1-216ENST00000486741 PIWIL2Q8TC59 973 aaKnown RBP13.46□□□□□ -0.25
HMGN1-216ENST00000486741 ZNF317Q96PQ6 595 aaPredicted RBP13.46□□□□□ -0.25
HMGN1-216ENST00000486741 AGAP2Q99490 1192 aa13.46□□□□□ -0.25
HMGN1-216ENST00000486741 SEMA3CQ99985 751 aa13.46□□□□□ -0.25
HMGN1-216ENST00000486741 Q9H521 79 aa13.46□□□□□ -0.25
HMGN1-216ENST00000486741 TCF7L2Q9NQB0 619 aa13.46□□□□□ -0.25
HMGN1-216ENST00000486741 LSM7Q9UK45 103 aaKnown RBP13.46□□□□□ -0.25
HMGN1-216ENST00000486741 FZD10Q9ULW2 581 aa13.46□□□□□ -0.25
HMGN1-216ENST00000486741 GABRQQ9UN88 632 aa13.46□□□□□ -0.25
HMGN1-216ENST00000486741 EP400Q96L91 3159 aa13.46□□□□□ -0.25
HMGN1-216ENST00000486741 PROZP22891 400 aa13.46□□□□□ -0.26
HMGN1-216ENST00000486741 DPYSL2Q16555 572 aa13.46□□□□□ -0.26
HMGN1-216ENST00000486741 PIDD1Q9HB75 910 aa13.46□□□□□ -0.26
HMGN1-216ENST00000486741 TAGLN3Q9UI15 199 aa13.46□□□□□ -0.26
HMGN1-216ENST00000486741 UBR3Q6ZT12 1888 aa13.46□□□□□ -0.26
HMGN1-216ENST00000486741 TPST1O60507 370 aa13.45□□□□□ -0.26
HMGN1-216ENST00000486741 GLP2RO95838 553 aa13.45□□□□□ -0.26
HMGN1-216ENST00000486741 SPATA31D3P0C874 917 aa13.45□□□□□ -0.26
HMGN1-216ENST00000486741 CDH5P33151 784 aaPredicted RBP13.45□□□□□ -0.26
HMGN1-216ENST00000486741 SLC25A3Q00325 362 aa13.45□□□□□ -0.26
HMGN1-216ENST00000486741 IMPG1Q17R60 797 aa13.45□□□□□ -0.26
HMGN1-216ENST00000486741 SPATA31D4Q6ZUB0 917 aa13.45□□□□□ -0.26
HMGN1-216ENST00000486741 ICA1LQ8NDH6 482 aa13.45□□□□□ -0.26
HMGN1-216ENST00000486741 ERLEC1Q96DZ1 483 aa13.45□□□□□ -0.26
HMGN1-216ENST00000486741 BTBD10Q9BSF8 475 aa13.45□□□□□ -0.26
HMGN1-216ENST00000486741 EFHD1Q9BUP0 239 aa13.45□□□□□ -0.26
HMGN1-216ENST00000486741 MRPL1Q9BYD6 325 aaKnown RBP13.45□□□□□ -0.26
HMGN1-216ENST00000486741 CNTN3Q9P232 1028 aa13.45□□□□□ -0.26
HMGN1-216ENST00000486741 TLR5O60602 858 aa13.45□□□□□ -0.26
HMGN1-216ENST00000486741 PFDN1O60925 122 aa13.45□□□□□ -0.26
HMGN1-216ENST00000486741 DDHD2O94830 711 aa13.45□□□□□ -0.26
HMGN1-216ENST00000486741 PROCP04070 461 aa13.45□□□□□ -0.26
HMGN1-216ENST00000486741 UBTFL6P0CB48 400 aaPredicted RBP13.45□□□□□ -0.26
HMGN1-216ENST00000486741 AFF1P51825 1210 aaKnown RBP13.45□□□□□ -0.26
HMGN1-216ENST00000486741 TRIM32Q13049 653 aa13.45□□□□□ -0.26
HMGN1-216ENST00000486741 KPNB1Q14974 876 aaKnown RBP13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 63.4 ms