RNA–Protein interactions for RNA: ENST00000486159.5

TMEM39A-208, Transcript of transmembrane protein 39A, humanhuman

TSL 3

Gene TMEM39A, Length 826 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-208ENST00000486159 SPATA4Q8NEY3 305 aa9.7□□□□□ -0.86
TMEM39A-208ENST00000486159 COG1Q8WTW3 980 aa9.7□□□□□ -0.86
TMEM39A-208ENST00000486159 MARVELD3Q96A59 401 aa9.7□□□□□ -0.86
TMEM39A-208ENST00000486159 SIPA1Q96FS4 1042 aa9.7□□□□□ -0.86
TMEM39A-208ENST00000486159 DNAI2Q9GZS0 605 aa9.7□□□□□ -0.86
TMEM39A-208ENST00000486159 MIR1-1HGQ9H1L0 117 aa9.7□□□□□ -0.86
TMEM39A-208ENST00000486159 CARD9Q9H257 536 aa9.7□□□□□ -0.86
TMEM39A-208ENST00000486159 C6orf106Q9H6K1 298 aaPredicted RBP9.7□□□□□ -0.86
TMEM39A-208ENST00000486159 LRRC4Q9HBW1 653 aa9.7□□□□□ -0.86
TMEM39A-208ENST00000486159 MRPL47Q9HD33 250 aaKnown RBP9.7□□□□□ -0.86
TMEM39A-208ENST00000486159 ARFGAP3Q9NP61 516 aa9.7□□□□□ -0.86
TMEM39A-208ENST00000486159 ACP6Q9NPH0 428 aa9.7□□□□□ -0.86
TMEM39A-208ENST00000486159 CTTNBP2NLQ9P2B4 639 aa9.7□□□□□ -0.86
TMEM39A-208ENST00000486159 XPO7Q9UIA9 1087 aaKnown RBP9.7□□□□□ -0.86
TMEM39A-208ENST00000486159 KIAA1257Q9ULG3 409 aa9.7□□□□□ -0.86
TMEM39A-208ENST00000486159 PCDHGC3Q9UN70 934 aa9.7□□□□□ -0.86
TMEM39A-208ENST00000486159 PCDHGA10Q9Y5H3 936 aa9.7□□□□□ -0.86
TMEM39A-208ENST00000486159 TMEM131Q92545 1883 aa9.7□□□□□ -0.86
TMEM39A-208ENST00000486159 PLXNB3Q9ULL4 1909 aa9.7□□□□□ -0.86
TMEM39A-208ENST00000486159 TMCO5BA8MYB1 307 aa9.69□□□□□ -0.86
TMEM39A-208ENST00000486159 TAF4O00268 1085 aa9.69□□□□□ -0.86
TMEM39A-208ENST00000486159 BUB1BO60566 1050 aaPredicted RBP9.69□□□□□ -0.86
TMEM39A-208ENST00000486159 SRGAP2O75044 1071 aa9.69□□□□□ -0.86
TMEM39A-208ENST00000486159 VDRP11473 427 aa9.69□□□□□ -0.86
TMEM39A-208ENST00000486159 CD70P32970 193 aa9.69□□□□□ -0.86
TMEM39A-208ENST00000486159 ACSL1P33121 698 aa9.69□□□□□ -0.86
TMEM39A-208ENST00000486159 SLC1A1P43005 524 aa9.69□□□□□ -0.86
TMEM39A-208ENST00000486159 BCAT1P54687 386 aa9.69□□□□□ -0.86
TMEM39A-208ENST00000486159 BST2Q10589 180 aaKnown RBP9.69□□□□□ -0.86
TMEM39A-208ENST00000486159 AKAP13Q12802 2813 aa9.69□□□□□ -0.86
TMEM39A-208ENST00000486159 KCNT1Q5JUK3 1230 aa9.69□□□□□ -0.86
TMEM39A-208ENST00000486159 TAF3Q5VWG9 929 aa9.69□□□□□ -0.86
TMEM39A-208ENST00000486159 NADSYN1Q6IA69 706 aa9.69□□□□□ -0.86
TMEM39A-208ENST00000486159 MMS22LQ6ZRQ5 1243 aa9.69□□□□□ -0.86
TMEM39A-208ENST00000486159 CHST9Q7L1S5 443 aa9.69□□□□□ -0.86
TMEM39A-208ENST00000486159 ANKS1BQ7Z6G8 1248 aa9.69□□□□□ -0.86
TMEM39A-208ENST00000486159 TADA2BQ86TJ2 420 aa9.69□□□□□ -0.86
TMEM39A-208ENST00000486159 SLCO6A1Q86UG4 719 aa9.69□□□□□ -0.86
TMEM39A-208ENST00000486159 MCOLN2Q8IZK6 566 aa9.69□□□□□ -0.86
TMEM39A-208ENST00000486159 RASGEF1CQ8N431 466 aa9.69□□□□□ -0.86
TMEM39A-208ENST00000486159 HDDC3Q8N4P3 179 aa9.69□□□□□ -0.86
TMEM39A-208ENST00000486159 ZNF454Q8N9F8 522 aa9.69□□□□□ -0.86
TMEM39A-208ENST00000486159 KDF1Q8NAX2 398 aaPredicted RBP9.69□□□□□ -0.86
TMEM39A-208ENST00000486159 C1orf216Q8TAB5 229 aa9.69□□□□□ -0.86
TMEM39A-208ENST00000486159 CEP76Q8TAP6 659 aa9.69□□□□□ -0.86
TMEM39A-208ENST00000486159 ADAM32Q8TC27 787 aa9.69□□□□□ -0.86
TMEM39A-208ENST00000486159 SLC35F5Q8WV83 523 aa9.69□□□□□ -0.86
TMEM39A-208ENST00000486159 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP9.69□□□□□ -0.86
TMEM39A-208ENST00000486159 DNASE2BQ8WZ79 361 aa9.69□□□□□ -0.86
TMEM39A-208ENST00000486159 PLD4Q96BZ4 506 aa9.69□□□□□ -0.86
TMEM39A-208ENST00000486159 ZNF653Q96CK0 615 aa9.69□□□□□ -0.86
TMEM39A-208ENST00000486159 CAPZA3Q96KX2 299 aa9.69□□□□□ -0.86
TMEM39A-208ENST00000486159 DCLK3Q9C098 648 aa9.69□□□□□ -0.86
TMEM39A-208ENST00000486159 MIS12Q9H081 205 aa9.69□□□□□ -0.86
TMEM39A-208ENST00000486159 TMEM245Q9H330 911 aa9.69□□□□□ -0.86
TMEM39A-208ENST00000486159 ANKZF1Q9H8Y5 726 aa9.69□□□□□ -0.86
TMEM39A-208ENST00000486159 ABCB8Q9NUT2 735 aa9.69□□□□□ -0.86
TMEM39A-208ENST00000486159 TAS2R14Q9NYV8 317 aa9.69□□□□□ -0.86
TMEM39A-208ENST00000486159 STIM2Q9P246 746 aa9.69□□□□□ -0.86
TMEM39A-208ENST00000486159 EIF2B4Q9UI10 523 aaKnown RBP9.69□□□□□ -0.86
TMEM39A-208ENST00000486159 STRIP2Q9ULQ0 834 aa9.69□□□□□ -0.86
TMEM39A-208ENST00000486159 ZNF510Q9Y2H8 683 aa9.69□□□□□ -0.86
TMEM39A-208ENST00000486159 CEP83Q9Y592 693 aa9.69□□□□□ -0.86
TMEM39A-208ENST00000486159 SCINQ9Y6U3 715 aa9.69□□□□□ -0.86
TMEM39A-208ENST00000486159 A0A1B0GVT2 93 aa9.68□□□□□ -0.86
TMEM39A-208ENST00000486159 CCDC66A2RUB6 948 aa9.68□□□□□ -0.86
TMEM39A-208ENST00000486159 METTL12A8MUP2 240 aa9.68□□□□□ -0.86
TMEM39A-208ENST00000486159 MEI4A8MW99 385 aa9.68□□□□□ -0.86
TMEM39A-208ENST00000486159 M0QYV0 167 aa9.68□□□□□ -0.86
TMEM39A-208ENST00000486159 PGRMC1O00264 195 aaKnown RBP9.68□□□□□ -0.86
TMEM39A-208ENST00000486159 PDE2AO00408 941 aaPredicted RBP9.68□□□□□ -0.86
TMEM39A-208ENST00000486159 ZNF185O15231 689 aa9.68□□□□□ -0.86
TMEM39A-208ENST00000486159 ZBTB24O43167 697 aaPredicted RBP9.68□□□□□ -0.86
TMEM39A-208ENST00000486159 THAP12O43422 761 aa9.68□□□□□ -0.86
TMEM39A-208ENST00000486159 SYNCRIPO60506 623 aaKnown RBP9.68□□□□□ -0.86
TMEM39A-208ENST00000486159 TBL1XO60907 577 aa9.68□□□□□ -0.86
TMEM39A-208ENST00000486159 CYBBP04839 570 aa9.68□□□□□ -0.86
TMEM39A-208ENST00000486159 CALB1P05937 261 aa9.68□□□□□ -0.86
TMEM39A-208ENST00000486159 CTNNA2P26232 953 aa9.68□□□□□ -0.86
TMEM39A-208ENST00000486159 CDH5P33151 784 aaPredicted RBP9.68□□□□□ -0.86
TMEM39A-208ENST00000486159 CSNK1EP49674 416 aaKnown RBP9.68□□□□□ -0.86
TMEM39A-208ENST00000486159 RPS24P62847 133 aaKnown RBP9.68□□□□□ -0.86
TMEM39A-208ENST00000486159 PITX1P78337 314 aaPredicted RBP9.68□□□□□ -0.86
TMEM39A-208ENST00000486159 STARD3Q14849 445 aa9.68□□□□□ -0.86
TMEM39A-208ENST00000486159 STILQ15468 1287 aa9.68□□□□□ -0.86
TMEM39A-208ENST00000486159 FNDC3BQ53EP0 1204 aaKnown RBP9.68□□□□□ -0.86
TMEM39A-208ENST00000486159 MPPE1Q53F39 396 aa9.68□□□□□ -0.86
TMEM39A-208ENST00000486159 FAM133BQ5BKY9 247 aaKnown RBP9.68□□□□□ -0.86
TMEM39A-208ENST00000486159 FSCBQ5H9T9 825 aa9.68□□□□□ -0.86
TMEM39A-208ENST00000486159 PRAMEF14Q5SWL7 426 aa9.68□□□□□ -0.86
TMEM39A-208ENST00000486159 DENND1BQ6P3S1 775 aa9.68□□□□□ -0.86
TMEM39A-208ENST00000486159 LCLAT1Q6UWP7 414 aa9.68□□□□□ -0.86
TMEM39A-208ENST00000486159 SERPINA13PQ6UXR4 307 aa9.68□□□□□ -0.86
TMEM39A-208ENST00000486159 KIAA0907Q7Z7F0 614 aaPredicted RBP9.68□□□□□ -0.86
TMEM39A-208ENST00000486159 CFAP52Q8N1V2 620 aa9.68□□□□□ -0.86
TMEM39A-208ENST00000486159 ARHGAP18Q8N392 663 aa9.68□□□□□ -0.86
TMEM39A-208ENST00000486159 EIF1ADQ8N9N8 165 aaKnown RBP9.68□□□□□ -0.86
TMEM39A-208ENST00000486159 NOA1Q8NC60 698 aaKnown RBP9.68□□□□□ -0.86
TMEM39A-208ENST00000486159 TMEM35BQ8NCS4 154 aa9.68□□□□□ -0.86
TMEM39A-208ENST00000486159 ZNF564Q8TBZ8 553 aaPredicted RBP9.68□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms