RNA–Protein interactions for RNA: ENST00000486023.1

COL6A1-204, Transcript of collagen type VI alpha 1 chain, humanhuman

TSL 2

Gene COL6A1, Length 968 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-204ENST00000486023 PSMB7Q99436 277 aa18.1■□□□□ 0.49
COL6A1-204ENST00000486023 DNAI1Q9UI46 699 aa18.1■□□□□ 0.49
COL6A1-204ENST00000486023 VPS51Q9UID3 782 aa18.1■□□□□ 0.49
COL6A1-204ENST00000486023 SLCO1B1Q9Y6L6 691 aa18.1■□□□□ 0.49
COL6A1-204ENST00000486023 IGLV3-10A0A075B6K4 115 aa18.09■□□□□ 0.49
COL6A1-204ENST00000486023 TBC1D3DA0A087WVF3 549 aa18.09■□□□□ 0.49
COL6A1-204ENST00000486023 TBC1D3IA0A087WXS9 549 aa18.09■□□□□ 0.49
COL6A1-204ENST00000486023 TBC1D3EA0A087X179 549 aa18.09■□□□□ 0.49
COL6A1-204ENST00000486023 TBC1D3KA0A087X1G2 549 aa18.09■□□□□ 0.49
COL6A1-204ENST00000486023 A0A1B0GVT2 93 aa18.09■□□□□ 0.49
COL6A1-204ENST00000486023 TBC1D3FA6NER0 549 aaPredicted RBP18.09■□□□□ 0.49
COL6A1-204ENST00000486023 LRRC72A6NJI9 287 aa18.09■□□□□ 0.49
COL6A1-204ENST00000486023 TBC1D3LB9A6J9 549 aa18.09■□□□□ 0.49
COL6A1-204ENST00000486023 FAM72CH0Y354 149 aa18.09■□□□□ 0.49
COL6A1-204ENST00000486023 ATMINO43313 823 aaPredicted RBP18.09■□□□□ 0.49
COL6A1-204ENST00000486023 ADH1BP00325 375 aa18.09■□□□□ 0.49
COL6A1-204ENST00000486023 ADRB1P08588 477 aa18.09■□□□□ 0.49
COL6A1-204ENST00000486023 TBC1D3HP0C7X1 549 aa18.09■□□□□ 0.49
COL6A1-204ENST00000486023 SRCP12931 536 aa18.09■□□□□ 0.49
COL6A1-204ENST00000486023 C5AR1P21730 350 aa18.09■□□□□ 0.49
COL6A1-204ENST00000486023 DNA2P51530 1060 aa18.09■□□□□ 0.49
COL6A1-204ENST00000486023 GALCP54803 685 aa18.09■□□□□ 0.49
COL6A1-204ENST00000486023 HDAC4P56524 1084 aa18.09■□□□□ 0.49
COL6A1-204ENST00000486023 UBASH3AP57075 661 aa18.09■□□□□ 0.49
COL6A1-204ENST00000486023 ELAVL3Q14576 367 aaKnown RBP18.09■□□□□ 0.49
COL6A1-204ENST00000486023 ACBD5Q5T8D3 534 aaPredicted RBP18.09■□□□□ 0.49
COL6A1-204ENST00000486023 FAM72AQ5TYM5 149 aa18.09■□□□□ 0.49
COL6A1-204ENST00000486023 KIAA0895LQ68EN5 471 aa18.09■□□□□ 0.49
COL6A1-204ENST00000486023 TBC1D3GQ6DHY5 549 aa18.09■□□□□ 0.49
COL6A1-204ENST00000486023 TBC1D3CQ6IPX1 549 aa18.09■□□□□ 0.49
COL6A1-204ENST00000486023 FAM72DQ6L9T8 149 aa18.09■□□□□ 0.49
COL6A1-204ENST00000486023 LAYNQ6UX15 382 aa18.09■□□□□ 0.49
COL6A1-204ENST00000486023 USP30Q70CQ3 517 aa18.09■□□□□ 0.49
COL6A1-204ENST00000486023 STRADAQ7RTN6 431 aa18.09■□□□□ 0.49
COL6A1-204ENST00000486023 ADAT2Q7Z6V5 191 aaKnown RBP18.09■□□□□ 0.49
COL6A1-204ENST00000486023 DSG4Q86SJ6 1040 aa18.09■□□□□ 0.49
COL6A1-204ENST00000486023 FAM72BQ86X60 149 aa18.09■□□□□ 0.49
COL6A1-204ENST00000486023 ZNF354CQ86Y25 554 aa18.09■□□□□ 0.49
COL6A1-204ENST00000486023 MCOLN2Q8IZK6 566 aa18.09■□□□□ 0.49
COL6A1-204ENST00000486023 TBC1D3Q8IZP1 549 aaPredicted RBP18.09■□□□□ 0.49
COL6A1-204ENST00000486023 TNKS2Q9H2K2 1166 aa18.09■□□□□ 0.49
COL6A1-204ENST00000486023 ATP13A1Q9HD20 1204 aa18.09■□□□□ 0.49
COL6A1-204ENST00000486023 SARDHQ9UL12 918 aa18.09■□□□□ 0.49
COL6A1-204ENST00000486023 A0A1W2PQC6 194 aa18.08■□□□□ 0.48
COL6A1-204ENST00000486023 KCNK3O14649 394 aa18.08■□□□□ 0.48
COL6A1-204ENST00000486023 CCP110O43303 1012 aa18.08■□□□□ 0.48
COL6A1-204ENST00000486023 SMAD6O43541 496 aaKnown RBP18.08■□□□□ 0.48
COL6A1-204ENST00000486023 ATP9BO43861 1147 aa18.08■□□□□ 0.48
COL6A1-204ENST00000486023 PLEKP08567 350 aaPredicted RBP18.08■□□□□ 0.48
COL6A1-204ENST00000486023 GOT1P17174 413 aa18.08■□□□□ 0.48
COL6A1-204ENST00000486023 PTMSP20962 102 aa18.08■□□□□ 0.48
COL6A1-204ENST00000486023 KLHL30Q0D2K2 578 aa18.08■□□□□ 0.48
COL6A1-204ENST00000486023 ZSCAN23Q3MJ62 389 aa18.08■□□□□ 0.48
COL6A1-204ENST00000486023 SLFN11Q7Z7L1 901 aa18.08■□□□□ 0.48
COL6A1-204ENST00000486023 PYROXD2Q8N2H3 581 aa18.08■□□□□ 0.48
COL6A1-204ENST00000486023 SLC32A1Q9H598 525 aa18.08■□□□□ 0.48
COL6A1-204ENST00000486023 MYO6Q9UM54 1294 aa18.08■□□□□ 0.48
COL6A1-204ENST00000486023 FARP1Q9Y4F1 1045 aaPredicted RBP18.08■□□□□ 0.48
COL6A1-204ENST00000486023 CKAP5Q14008 2032 aa18.08■□□□□ 0.48
COL6A1-204ENST00000486023 MUC22E2RYF6 1773 aaPredicted RBP18.07■□□□□ 0.48
COL6A1-204ENST00000486023 ILVBLA1L0T0 632 aa18.07■□□□□ 0.48
COL6A1-204ENST00000486023 RTN2O75298 545 aa18.07■□□□□ 0.48
COL6A1-204ENST00000486023 CD27P26842 260 aa18.07■□□□□ 0.48
COL6A1-204ENST00000486023 ACVRL1P37023 503 aa18.07■□□□□ 0.48
COL6A1-204ENST00000486023 AFF3P51826 1226 aaKnown RBP18.07■□□□□ 0.48
COL6A1-204ENST00000486023 GNA12Q03113 381 aa18.07■□□□□ 0.48
COL6A1-204ENST00000486023 FAM46CQ5VWP2 391 aa18.07■□□□□ 0.48
COL6A1-204ENST00000486023 E4F1Q66K89 784 aaPredicted RBP18.07■□□□□ 0.48
COL6A1-204ENST00000486023 LEKR1Q6ZMV7 388 aa18.07■□□□□ 0.48
COL6A1-204ENST00000486023 ZNF571Q7Z3V5 609 aaPredicted RBP18.07■□□□□ 0.48
COL6A1-204ENST00000486023 PIP4K2CQ8TBX8 421 aa18.07■□□□□ 0.48
COL6A1-204ENST00000486023 CENPIQ92674 756 aaPredicted RBP18.07■□□□□ 0.48
COL6A1-204ENST00000486023 OSBPL2Q9H1P3 480 aa18.07■□□□□ 0.48
COL6A1-204ENST00000486023 PCED1AQ9H1Q7 454 aa18.07■□□□□ 0.48
COL6A1-204ENST00000486023 GAREM1Q9H706 876 aa18.07■□□□□ 0.48
COL6A1-204ENST00000486023 IL21RQ9HBE5 538 aa18.07■□□□□ 0.48
COL6A1-204ENST00000486023 TM9SF3Q9HD45 589 aa18.07■□□□□ 0.48
COL6A1-204ENST00000486023 NDFIP2Q9NV92 336 aa18.07■□□□□ 0.48
COL6A1-204ENST00000486023 MYO1AQ9UBC5 1043 aa18.07■□□□□ 0.48
COL6A1-204ENST00000486023 ACTL7AQ9Y615 435 aa18.07■□□□□ 0.48
COL6A1-204ENST00000486023 PLXND1Q9Y4D7 1925 aa18.07■□□□□ 0.48
COL6A1-204ENST00000486023 C1QTNF3-AMACRE9PGA6 284 aa18.06■□□□□ 0.48
COL6A1-204ENST00000486023 KPNA3O00505 521 aaPredicted RBP18.06■□□□□ 0.48
COL6A1-204ENST00000486023 MCF2LO15068 1137 aa18.06■□□□□ 0.48
COL6A1-204ENST00000486023 CREB3O43889 395 aa18.06■□□□□ 0.48
COL6A1-204ENST00000486023 LRIG2O94898 1065 aa18.06■□□□□ 0.48
COL6A1-204ENST00000486023 FTLP02792 175 aaPredicted RBP18.06■□□□□ 0.48
COL6A1-204ENST00000486023 IGHV4-34P06331 123 aa18.06■□□□□ 0.48
COL6A1-204ENST00000486023 RHOQP17081 205 aa18.06■□□□□ 0.48
COL6A1-204ENST00000486023 DESP17661 470 aa18.06■□□□□ 0.48
COL6A1-204ENST00000486023 MAT2AP31153 395 aaKnown RBP18.06■□□□□ 0.48
COL6A1-204ENST00000486023 RECQLP46063 649 aaPredicted RBP18.06■□□□□ 0.48
COL6A1-204ENST00000486023 ZNF143P52747 638 aaPredicted RBP18.06■□□□□ 0.48
COL6A1-204ENST00000486023 GSCP56915 257 aaPredicted RBP18.06■□□□□ 0.48
COL6A1-204ENST00000486023 ZNF252P-AS1Q0IIN9 211 aa18.06■□□□□ 0.48
COL6A1-204ENST00000486023 CNTN1Q12860 1018 aa18.06■□□□□ 0.48
COL6A1-204ENST00000486023 TEAD4Q15561 434 aa18.06■□□□□ 0.48
COL6A1-204ENST00000486023 EFHC2Q5JST6 749 aa18.06■□□□□ 0.48
COL6A1-204ENST00000486023 RYBPQ8N488 228 aaPredicted RBP18.06■□□□□ 0.48
COL6A1-204ENST00000486023 DCAF4L2Q8NA75 395 aa18.06■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms