RNA–Protein interactions for RNA: ENST00000448238.2

NIPBL-202, Transcript of NIPBL, cohesin loading factor, humanhuman

TSL 1 (best) BASIC

Gene NIPBL, Length 8,729 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPBL-202ENST00000448238 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP9.06□□□□□ -0.96
NIPBL-202ENST00000448238 URADA6NGE7 173 aa9.06□□□□□ -0.96
NIPBL-202ENST00000448238 STAU1O95793 577 aaKnown RBP9.06□□□□□ -0.96
NIPBL-202ENST00000448238 CD2P06729 351 aa9.06□□□□□ -0.96
NIPBL-202ENST00000448238 ZNF177Q13360 481 aaPredicted RBP9.06□□□□□ -0.96
NIPBL-202ENST00000448238 RESP18Q5W5W9 173 aa9.06□□□□□ -0.96
NIPBL-202ENST00000448238 RNF43Q68DV7 783 aa9.06□□□□□ -0.96
NIPBL-202ENST00000448238 LLGL2Q6P1M3 1020 aa9.06□□□□□ -0.96
NIPBL-202ENST00000448238 KCNK18Q7Z418 384 aa9.06□□□□□ -0.96
NIPBL-202ENST00000448238 SNX20Q7Z614 316 aa9.06□□□□□ -0.96
NIPBL-202ENST00000448238 OR10H5Q8NGA6 315 aa9.06□□□□□ -0.96
NIPBL-202ENST00000448238 HASPINQ8TF76 798 aa9.06□□□□□ -0.96
NIPBL-202ENST00000448238 ATG4AQ8WYN0 398 aa9.06□□□□□ -0.96
NIPBL-202ENST00000448238 CPNE2Q96FN4 548 aaPredicted RBP9.06□□□□□ -0.96
NIPBL-202ENST00000448238 GRHL1Q9NZI5 618 aa9.06□□□□□ -0.96
NIPBL-202ENST00000448238 SLC26A4O43511 780 aa9.06□□□□□ -0.96
NIPBL-202ENST00000448238 ANXA5P08758 320 aa9.06□□□□□ -0.96
NIPBL-202ENST00000448238 CYP2C8P10632 490 aa9.06□□□□□ -0.96
NIPBL-202ENST00000448238 GADD45AP24522 165 aa9.06□□□□□ -0.96
NIPBL-202ENST00000448238 CDK9P50750 372 aaKnown RBP9.06□□□□□ -0.96
NIPBL-202ENST00000448238 PEX6Q13608 980 aa9.06□□□□□ -0.96
NIPBL-202ENST00000448238 HAGHLQ6PII5 290 aaPredicted RBP9.06□□□□□ -0.96
NIPBL-202ENST00000448238 RTL4Q6ZR62 310 aa9.06□□□□□ -0.96
NIPBL-202ENST00000448238 ZNF621Q6ZSS3 439 aa9.06□□□□□ -0.96
NIPBL-202ENST00000448238 SKA3Q8IX90 412 aa9.06□□□□□ -0.96
NIPBL-202ENST00000448238 PNMA5Q96PV4 448 aa9.06□□□□□ -0.96
NIPBL-202ENST00000448238 PIGSQ96S52 555 aa9.06□□□□□ -0.96
NIPBL-202ENST00000448238 PABPC3Q9H361 631 aaKnown RBP9.06□□□□□ -0.96
NIPBL-202ENST00000448238 CHST12Q9NRB3 414 aa9.06□□□□□ -0.96
NIPBL-202ENST00000448238 MYH15Q9Y2K3 1946 aa9.06□□□□□ -0.96
NIPBL-202ENST00000448238 SSU72P8A0A1W2PR75 194 aa9.06□□□□□ -0.96
NIPBL-202ENST00000448238 TAF5LO75529 589 aa9.06□□□□□ -0.96
NIPBL-202ENST00000448238 IL18RAPO95256 599 aa9.06□□□□□ -0.96
NIPBL-202ENST00000448238 ATP6V1G2O95670 118 aa9.06□□□□□ -0.96
NIPBL-202ENST00000448238 ASNSP08243 561 aa9.06□□□□□ -0.96
NIPBL-202ENST00000448238 HOXB8P17481 243 aaPredicted RBP9.06□□□□□ -0.96
NIPBL-202ENST00000448238 CRABP2P29373 138 aa9.06□□□□□ -0.96
NIPBL-202ENST00000448238 RNASEH2BQ5TBB1 312 aaKnown RBP9.06□□□□□ -0.96
NIPBL-202ENST00000448238 KCTD1Q719H9 257 aa9.06□□□□□ -0.96
NIPBL-202ENST00000448238 PIGKQ92643 395 aa9.06□□□□□ -0.96
NIPBL-202ENST00000448238 APOL2Q9BQE5 337 aa9.06□□□□□ -0.96
NIPBL-202ENST00000448238 UNKLQ9H9P5 680 aaKnown RBP9.06□□□□□ -0.96
NIPBL-202ENST00000448238 CLK4Q9HAZ1 481 aaKnown RBP9.06□□□□□ -0.96
NIPBL-202ENST00000448238 AAASQ9NRG9 546 aa9.06□□□□□ -0.96
NIPBL-202ENST00000448238 DMGDHQ9UI17 866 aaKnown RBP9.06□□□□□ -0.96
NIPBL-202ENST00000448238 OGDHLQ9ULD0 1010 aa9.06□□□□□ -0.96
NIPBL-202ENST00000448238 ANGPT4Q9Y264 503 aa9.06□□□□□ -0.96
NIPBL-202ENST00000448238 PCDHGC5Q9Y5F6 944 aa9.06□□□□□ -0.96
NIPBL-202ENST00000448238 TEX13CA0A0J9YWL9 993 aa9.06□□□□□ -0.96
NIPBL-202ENST00000448238 H3BM21 787 aa9.06□□□□□ -0.96
NIPBL-202ENST00000448238 VAMP4O75379 141 aa9.06□□□□□ -0.96
NIPBL-202ENST00000448238 GLP2RO95838 553 aa9.06□□□□□ -0.96
NIPBL-202ENST00000448238 DBIP07108 87 aaKnown RBP9.06□□□□□ -0.96
NIPBL-202ENST00000448238 ARCN1P48444 511 aaKnown RBP9.06□□□□□ -0.96
NIPBL-202ENST00000448238 DNASE1L1P49184 302 aa9.06□□□□□ -0.96
NIPBL-202ENST00000448238 CDK7P50613 346 aa9.06□□□□□ -0.96
NIPBL-202ENST00000448238 RAB5BP61020 215 aa9.06□□□□□ -0.96
NIPBL-202ENST00000448238 CDK10Q15131 360 aa9.06□□□□□ -0.96
NIPBL-202ENST00000448238 ING5Q8WYH8 240 aa9.06□□□□□ -0.96
NIPBL-202ENST00000448238 KAT2AQ92830 837 aa9.06□□□□□ -0.96
NIPBL-202ENST00000448238 TMEM159Q96B96 161 aa9.06□□□□□ -0.96
NIPBL-202ENST00000448238 C9orf72Q96LT7 481 aa9.06□□□□□ -0.96
NIPBL-202ENST00000448238 PADI2Q9Y2J8 665 aa9.06□□□□□ -0.96
NIPBL-202ENST00000448238 ZSCAN5CA6NGD5 496 aaPredicted RBP9.06□□□□□ -0.96
NIPBL-202ENST00000448238 SLC2A4P14672 509 aa9.06□□□□□ -0.96
NIPBL-202ENST00000448238 SH2D3CQ8N5H7 860 aa9.06□□□□□ -0.96
NIPBL-202ENST00000448238 LSM14AQ8ND56 463 aaKnown RBP9.06□□□□□ -0.96
NIPBL-202ENST00000448238 BPIFB6Q8NFQ5 453 aa9.06□□□□□ -0.96
NIPBL-202ENST00000448238 CEP76Q8TAP6 659 aa9.06□□□□□ -0.96
NIPBL-202ENST00000448238 DPF1Q92782 380 aa9.06□□□□□ -0.96
NIPBL-202ENST00000448238 ZSCAN5AQ9BUG6 496 aa9.06□□□□□ -0.96
NIPBL-202ENST00000448238 KCNH4Q9UQ05 1017 aa9.06□□□□□ -0.96
NIPBL-202ENST00000448238 TSTD3H0UI37 97 aa9.06□□□□□ -0.96
NIPBL-202ENST00000448238 PDE2AO00408 941 aaPredicted RBP9.06□□□□□ -0.96
NIPBL-202ENST00000448238 S100A3P33764 101 aa9.06□□□□□ -0.96
NIPBL-202ENST00000448238 ATXN1P54253 815 aaKnown RBP9.06□□□□□ -0.96
NIPBL-202ENST00000448238 ACSM2AQ08AH3 577 aa9.06□□□□□ -0.96
NIPBL-202ENST00000448238 HSD17B12Q53GQ0 312 aa9.06□□□□□ -0.96
NIPBL-202ENST00000448238 WDR49Q8IV35 697 aa9.06□□□□□ -0.96
NIPBL-202ENST00000448238 C7orf61Q8IZ16 206 aa9.06□□□□□ -0.96
NIPBL-202ENST00000448238 GUF1Q8N442 669 aaKnown RBP9.06□□□□□ -0.96
NIPBL-202ENST00000448238 SPERTQ8NA61 448 aa9.06□□□□□ -0.96
NIPBL-202ENST00000448238 SDR42E1Q8WUS8 393 aa9.06□□□□□ -0.96
NIPBL-202ENST00000448238 RFKQ969G6 155 aa9.06□□□□□ -0.96
NIPBL-202ENST00000448238 DHRS1Q96LJ7 313 aa9.06□□□□□ -0.96
NIPBL-202ENST00000448238 PRRG4Q9BZD6 226 aa9.06□□□□□ -0.96
NIPBL-202ENST00000448238 TMEM184CQ9NVA4 438 aa9.06□□□□□ -0.96
NIPBL-202ENST00000448238 SPATA7Q9P0W8 599 aa9.06□□□□□ -0.96
NIPBL-202ENST00000448238 MYH14Q7Z406 1995 aaKnown RBP9.06□□□□□ -0.96
NIPBL-202ENST00000448238 ABLIM1O14639 778 aa9.05□□□□□ -0.96
NIPBL-202ENST00000448238 IFNAR1P17181 557 aa9.05□□□□□ -0.96
NIPBL-202ENST00000448238 KCNB1Q14721 858 aa9.05□□□□□ -0.96
NIPBL-202ENST00000448238 BOLA3Q53S33 107 aa9.05□□□□□ -0.96
NIPBL-202ENST00000448238 OR56A4Q8NGH8 313 aa9.05□□□□□ -0.96
NIPBL-202ENST00000448238 HM13Q8TCT9 377 aa9.05□□□□□ -0.96
NIPBL-202ENST00000448238 ATL1Q8WXF7 558 aa9.05□□□□□ -0.96
NIPBL-202ENST00000448238 HIST1H2AAQ96QV6 131 aa9.05□□□□□ -0.96
NIPBL-202ENST00000448238 TNKS2Q9H2K2 1166 aa9.05□□□□□ -0.96
NIPBL-202ENST00000448238 NELFAQ9H3P2 528 aa9.05□□□□□ -0.96
NIPBL-202ENST00000448238 ABCD2Q9UBJ2 740 aa9.05□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms