RNA–Protein interactions for RNA: ENST00000433762.1

COL6A3-207, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL6A3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-207ENST00000433762 TUBP50607 506 aa13.93□□□□□ -0.18
COL6A3-207ENST00000433762 SH3BGRP55822 239 aaPredicted RBP13.93□□□□□ -0.18
COL6A3-207ENST00000433762 PITX1P78337 314 aaPredicted RBP13.93□□□□□ -0.18
COL6A3-207ENST00000433762 PRKAA1Q13131 559 aa13.93□□□□□ -0.18
COL6A3-207ENST00000433762 CCNIQ14094 377 aa13.93□□□□□ -0.18
COL6A3-207ENST00000433762 LIPMQ5VYY2 423 aa13.93□□□□□ -0.18
COL6A3-207ENST00000433762 PM20D1Q6GTS8 502 aa13.93□□□□□ -0.18
COL6A3-207ENST00000433762 C16orf89Q6UX73 402 aa13.93□□□□□ -0.18
COL6A3-207ENST00000433762 MOB2Q70IA6 237 aa13.93□□□□□ -0.18
COL6A3-207ENST00000433762 DPP9Q86TI2 863 aa13.93□□□□□ -0.18
COL6A3-207ENST00000433762 DNAAF3Q8N9W5 541 aa13.93□□□□□ -0.18
COL6A3-207ENST00000433762 RP9Q8TA86 221 aaKnown RBP13.93□□□□□ -0.18
COL6A3-207ENST00000433762 ZNF483Q8TF39 744 aaPredicted RBP13.93□□□□□ -0.18
COL6A3-207ENST00000433762 VPS39Q96JC1 886 aa13.93□□□□□ -0.18
COL6A3-207ENST00000433762 TSNARE1Q96NA8 513 aa13.93□□□□□ -0.18
COL6A3-207ENST00000433762 MLPHQ9BV36 600 aaPredicted RBP13.93□□□□□ -0.18
COL6A3-207ENST00000433762 KLHL4Q9C0H6 718 aa13.93□□□□□ -0.18
COL6A3-207ENST00000433762 YIPF3Q9GZM5 350 aa13.93□□□□□ -0.18
COL6A3-207ENST00000433762 TCF7L2Q9NQB0 619 aa13.93□□□□□ -0.18
COL6A3-207ENST00000433762 CAMSAP3Q9P1Y5 1249 aaPredicted RBP13.93□□□□□ -0.18
COL6A3-207ENST00000433762 POMPQ9Y244 141 aa13.93□□□□□ -0.18
COL6A3-207ENST00000433762 IPPQ9Y573 584 aa13.93□□□□□ -0.18
COL6A3-207ENST00000433762 HDAC3O15379 428 aa13.92□□□□□ -0.18
COL6A3-207ENST00000433762 CD68P34810 354 aaPredicted RBP13.92□□□□□ -0.18
COL6A3-207ENST00000433762 FAM182AQ5T1J6 154 aa13.92□□□□□ -0.18
COL6A3-207ENST00000433762 BSPRYQ5W0U4 402 aa13.92□□□□□ -0.18
COL6A3-207ENST00000433762 DCLRE1AQ6PJP8 1040 aa13.92□□□□□ -0.18
COL6A3-207ENST00000433762 ATG14Q6ZNE5 492 aa13.92□□□□□ -0.18
COL6A3-207ENST00000433762 CMC1Q7Z7K0 106 aa13.92□□□□□ -0.18
COL6A3-207ENST00000433762 KBTBD6Q86V97 674 aa13.92□□□□□ -0.18
COL6A3-207ENST00000433762 MFN1Q8IWA4 741 aa13.92□□□□□ -0.18
COL6A3-207ENST00000433762 TDRD5Q8NAT2 981 aaKnown RBP13.92□□□□□ -0.18
COL6A3-207ENST00000433762 TTC1Q99614 292 aa13.92□□□□□ -0.18
COL6A3-207ENST00000433762 HACD3Q9P035 362 aa13.92□□□□□ -0.18
COL6A3-207ENST00000433762 C6orf203Q9P0P8 240 aaPredicted RBP13.92□□□□□ -0.18
COL6A3-207ENST00000433762 STK39Q9UEW8 545 aa13.92□□□□□ -0.18
COL6A3-207ENST00000433762 AAR2Q9Y312 384 aaKnown RBP13.92□□□□□ -0.18
COL6A3-207ENST00000433762 NR2E3Q9Y5X4 410 aa13.92□□□□□ -0.18
COL6A3-207ENST00000433762 RGSL1A5PLK6 1076 aa13.91□□□□□ -0.18
COL6A3-207ENST00000433762 MEI4A8MW99 385 aa13.91□□□□□ -0.18
COL6A3-207ENST00000433762 PDHXO00330 501 aa13.91□□□□□ -0.18
COL6A3-207ENST00000433762 ZBTB24O43167 697 aaPredicted RBP13.91□□□□□ -0.18
COL6A3-207ENST00000433762 SMIM24O75264 130 aa13.91□□□□□ -0.18
COL6A3-207ENST00000433762 LTFP02788 710 aa13.91□□□□□ -0.18
COL6A3-207ENST00000433762 PAX3P23760 479 aa13.91□□□□□ -0.18
COL6A3-207ENST00000433762 TBL3Q12788 808 aaKnown RBP13.91□□□□□ -0.18
COL6A3-207ENST00000433762 NME3Q13232 169 aa13.91□□□□□ -0.18
COL6A3-207ENST00000433762 RFTN1Q14699 578 aaPredicted RBP13.91□□□□□ -0.18
COL6A3-207ENST00000433762 ZFP1Q6P2D0 407 aa13.91□□□□□ -0.18
COL6A3-207ENST00000433762 SLC30A9Q6PML9 568 aa13.91□□□□□ -0.18
COL6A3-207ENST00000433762 GPR142Q7Z601 462 aa13.91□□□□□ -0.18
COL6A3-207ENST00000433762 PLD6Q8N2A8 252 aaKnown RBP13.91□□□□□ -0.18
COL6A3-207ENST00000433762 GALNT15Q8N3T1 639 aa13.91□□□□□ -0.18
COL6A3-207ENST00000433762 ZNF781Q8N8C0 355 aa13.91□□□□□ -0.18
COL6A3-207ENST00000433762 SMG8Q8ND04 991 aaKnown RBP13.91□□□□□ -0.18
COL6A3-207ENST00000433762 C1QTNF1Q9BXJ1 281 aa13.91□□□□□ -0.18
COL6A3-207ENST00000433762 ULBP1Q9BZM6 244 aa13.91□□□□□ -0.18
COL6A3-207ENST00000433762 OSBPL2Q9H1P3 480 aa13.91□□□□□ -0.18
COL6A3-207ENST00000433762 TBC1D30Q9Y2I9 924 aa13.91□□□□□ -0.18
COL6A3-207ENST00000433762 SHROOM3Q8TF72 1996 aa13.91□□□□□ -0.18
COL6A3-207ENST00000433762 KCNK1O00180 336 aa13.91□□□□□ -0.18
COL6A3-207ENST00000433762 AP1G1O43747 822 aa13.91□□□□□ -0.18
COL6A3-207ENST00000433762 BEST1O76090 585 aa13.91□□□□□ -0.18
COL6A3-207ENST00000433762 NCF2P19878 526 aaPredicted RBP13.91□□□□□ -0.18
COL6A3-207ENST00000433762 RPL14P50914 215 aaKnown RBP13.91□□□□□ -0.18
COL6A3-207ENST00000433762 GTF2A2P52657 109 aa13.91□□□□□ -0.18
COL6A3-207ENST00000433762 ROR2Q01974 943 aaKnown RBP13.91□□□□□ -0.18
COL6A3-207ENST00000433762 ILF2Q12905 390 aaKnown RBP13.91□□□□□ -0.18
COL6A3-207ENST00000433762 FAM35AQ86V20 835 aa13.91□□□□□ -0.18
COL6A3-207ENST00000433762 ZC3HC1Q86WB0 502 aaKnown RBP13.91□□□□□ -0.18
COL6A3-207ENST00000433762 DEFB107AQ8IZN7 70 aa13.91□□□□□ -0.18
COL6A3-207ENST00000433762 ZSCAN18Q8TBC5 510 aaPredicted RBP13.91□□□□□ -0.18
COL6A3-207ENST00000433762 SLC10A4Q96EP9 437 aa13.91□□□□□ -0.18
COL6A3-207ENST00000433762 MED10Q9BTT4 135 aa13.91□□□□□ -0.18
COL6A3-207ENST00000433762 COLEC11Q9BWP8 271 aa13.91□□□□□ -0.18
COL6A3-207ENST00000433762 GATA5Q9BWX5 397 aaPredicted RBP13.91□□□□□ -0.18
COL6A3-207ENST00000433762 ZNF385DQ9H6B1 395 aa13.91□□□□□ -0.18
COL6A3-207ENST00000433762 TLK1Q9UKI8 766 aa13.91□□□□□ -0.18
COL6A3-207ENST00000433762 CDH9Q9ULB4 789 aa13.91□□□□□ -0.18
COL6A3-207ENST00000433762 GNEQ9Y223 722 aaKnown RBP13.91□□□□□ -0.18
COL6A3-207ENST00000433762 BAG2O95816 211 aa13.9□□□□□ -0.18
COL6A3-207ENST00000433762 UQCRBP14927 111 aa13.9□□□□□ -0.18
COL6A3-207ENST00000433762 HOXC8P31273 242 aa13.9□□□□□ -0.18
COL6A3-207ENST00000433762 KPNA2P52292 529 aaKnown RBP13.9□□□□□ -0.18
COL6A3-207ENST00000433762 TMEM62Q0P6H9 643 aa13.9□□□□□ -0.18
COL6A3-207ENST00000433762 SLC12A1Q13621 1099 aa13.9□□□□□ -0.18
COL6A3-207ENST00000433762 GRM2Q14416 872 aa13.9□□□□□ -0.18
COL6A3-207ENST00000433762 MFSD10Q14728 455 aa13.9□□□□□ -0.18
COL6A3-207ENST00000433762 RALGPS1Q5JS13 557 aa13.9□□□□□ -0.18
COL6A3-207ENST00000433762 SEL1L3Q68CR1 1132 aa13.9□□□□□ -0.18
COL6A3-207ENST00000433762 FRMD7Q6ZUT3 714 aa13.9□□□□□ -0.18
COL6A3-207ENST00000433762 POU5F2Q8N7G0 328 aa13.9□□□□□ -0.18
COL6A3-207ENST00000433762 CATSPER1Q8NEC5 780 aa13.9□□□□□ -0.18
COL6A3-207ENST00000433762 STYXQ8WUJ0 223 aa13.9□□□□□ -0.18
COL6A3-207ENST00000433762 ACE2Q9BYF1 805 aaPredicted RBP13.9□□□□□ -0.18
COL6A3-207ENST00000433762 CEP41Q9BYV8 373 aa13.9□□□□□ -0.18
COL6A3-207ENST00000433762 CSNK1G1Q9HCP0 422 aa13.9□□□□□ -0.18
COL6A3-207ENST00000433762 CRTAC1Q9NQ79 661 aa13.9□□□□□ -0.18
COL6A3-207ENST00000433762 C20orf96Q9NUD7 363 aaPredicted RBP13.9□□□□□ -0.18
COL6A3-207ENST00000433762 CLEC11AQ9Y240 323 aa13.9□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms