RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 MARC1Q5VT66 337 aa10.32□□□□□ -0.76
CD44-207ENST00000425428 ITPRIPL1Q6GPH6 555 aa10.32□□□□□ -0.76
CD44-207ENST00000425428 DRICH1Q6PGQ1 229 aaPredicted RBP10.32□□□□□ -0.76
CD44-207ENST00000425428 CCDC137Q6PK04 289 aaKnown RBP10.32□□□□□ -0.76
CD44-207ENST00000425428 TRMT11Q7Z4G4 463 aaKnown RBP10.32□□□□□ -0.76
CD44-207ENST00000425428 PAF1Q8N7H5 531 aa10.32□□□□□ -0.76
CD44-207ENST00000425428 C1orf54Q8WWF1 131 aa10.32□□□□□ -0.76
CD44-207ENST00000425428 HMCESQ96FZ2 354 aa10.32□□□□□ -0.76
CD44-207ENST00000425428 ZNF599Q96NL3 588 aa10.32□□□□□ -0.76
CD44-207ENST00000425428 CINPQ9BW66 212 aaPredicted RBP10.32□□□□□ -0.76
CD44-207ENST00000425428 ETNK2Q9NVF9 386 aa10.32□□□□□ -0.76
CD44-207ENST00000425428 UBA2Q9UBT2 640 aaPredicted RBP10.32□□□□□ -0.76
CD44-207ENST00000425428 DUSP12Q9UNI6 340 aa10.32□□□□□ -0.76
CD44-207ENST00000425428 DRG1Q9Y295 367 aaKnown RBP10.32□□□□□ -0.76
CD44-207ENST00000425428 SZT2Q5T011 3432 aa10.32□□□□□ -0.76
CD44-207ENST00000425428 SPECC1L-ADORA2AF8WAN1 911 aa10.31□□□□□ -0.76
CD44-207ENST00000425428 STK25O00506 426 aa10.31□□□□□ -0.76
CD44-207ENST00000425428 KCNN4O15554 427 aa10.31□□□□□ -0.76
CD44-207ENST00000425428 LIASO43766 372 aa10.31□□□□□ -0.76
CD44-207ENST00000425428 ECEL1O95672 775 aa10.31□□□□□ -0.76
CD44-207ENST00000425428 ITGAVP06756 1048 aa10.31□□□□□ -0.76
CD44-207ENST00000425428 HSPA9P38646 679 aaKnown RBP10.31□□□□□ -0.76
CD44-207ENST00000425428 IRAK1P51617 712 aa10.31□□□□□ -0.76
CD44-207ENST00000425428 ECT2LQ008S8 904 aa10.31□□□□□ -0.76
CD44-207ENST00000425428 PRKCQQ04759 706 aa10.31□□□□□ -0.76
CD44-207ENST00000425428 KDSRQ06136 332 aa10.31□□□□□ -0.76
CD44-207ENST00000425428 RAD51Q06609 339 aa10.31□□□□□ -0.76
CD44-207ENST00000425428 PPIDQ08752 370 aaKnown RBP10.31□□□□□ -0.76
CD44-207ENST00000425428 ITKQ08881 620 aa10.31□□□□□ -0.76
CD44-207ENST00000425428 PRPSAP1Q14558 356 aa10.31□□□□□ -0.76
CD44-207ENST00000425428 ACCSLQ4AC99 568 aa10.31□□□□□ -0.76
CD44-207ENST00000425428 SLC44A4Q53GD3 710 aa10.31□□□□□ -0.76
CD44-207ENST00000425428 PITRM1Q5JRX3 1037 aa10.31□□□□□ -0.76
CD44-207ENST00000425428 MBLAC2Q68D91 279 aa10.31□□□□□ -0.76
CD44-207ENST00000425428 CXorf57Q6NSI4 855 aaKnown RBP10.31□□□□□ -0.76
CD44-207ENST00000425428 NPNTQ6UXI9 565 aa10.31□□□□□ -0.76
CD44-207ENST00000425428 ZNF852Q6ZMS4 543 aa10.31□□□□□ -0.76
CD44-207ENST00000425428 SYDE1Q6ZW31 735 aaPredicted RBP10.31□□□□□ -0.76
CD44-207ENST00000425428 KLHL7Q8IXQ5 586 aa10.31□□□□□ -0.76
CD44-207ENST00000425428 GJD3Q8N144 294 aa10.31□□□□□ -0.76
CD44-207ENST00000425428 ATP11CQ8NB49 1132 aa10.31□□□□□ -0.76
CD44-207ENST00000425428 SPATA4Q8NEY3 305 aa10.31□□□□□ -0.76
CD44-207ENST00000425428 OR7D4Q8NG98 312 aa10.31□□□□□ -0.76
CD44-207ENST00000425428 HTR3CQ8WXA8 447 aa10.31□□□□□ -0.76
CD44-207ENST00000425428 TSGA13Q96PP4 275 aa10.31□□□□□ -0.76
CD44-207ENST00000425428 LRRC19Q9H756 370 aa10.31□□□□□ -0.76
CD44-207ENST00000425428 KLHL8Q9P2G9 620 aaPredicted RBP10.31□□□□□ -0.76
CD44-207ENST00000425428 SAE1Q9UBE0 346 aaPredicted RBP10.31□□□□□ -0.76
CD44-207ENST00000425428 TTLL3Q9Y4R7 772 aa10.31□□□□□ -0.76
CD44-207ENST00000425428 CHD5Q8TDI0 1954 aa10.31□□□□□ -0.76
CD44-207ENST00000425428 BCLAF3A2AJT9 711 aaKnown RBP10.31□□□□□ -0.76
CD44-207ENST00000425428 MATN3O15232 486 aa10.31□□□□□ -0.76
CD44-207ENST00000425428 KAT7O95251 611 aa10.31□□□□□ -0.76
CD44-207ENST00000425428 MAP3K6O95382 1288 aa10.31□□□□□ -0.76
CD44-207ENST00000425428 IFNB1P01574 187 aa10.31□□□□□ -0.76
CD44-207ENST00000425428 SRPRAP08240 638 aaKnown RBP10.31□□□□□ -0.76
CD44-207ENST00000425428 CCNB1P14635 433 aa10.31□□□□□ -0.76
CD44-207ENST00000425428 PECAM1P16284 738 aaPredicted RBP10.31□□□□□ -0.76
CD44-207ENST00000425428 CES1P23141 567 aa10.31□□□□□ -0.76
CD44-207ENST00000425428 HLA-FP30511 346 aa10.31□□□□□ -0.76
CD44-207ENST00000425428 CTHP32929 405 aa10.31□□□□□ -0.76
CD44-207ENST00000425428 CD70P32970 193 aa10.31□□□□□ -0.76
CD44-207ENST00000425428 COILP38432 576 aaPredicted RBP10.31□□□□□ -0.76
CD44-207ENST00000425428 TNFRSF4P43489 277 aa10.31□□□□□ -0.76
CD44-207ENST00000425428 CLCN6P51797 869 aa10.31□□□□□ -0.76
CD44-207ENST00000425428 HNRNPDQ14103 355 aaKnown RBP10.31□□□□□ -0.76
CD44-207ENST00000425428 DHX34Q14147 1143 aaKnown RBP10.31□□□□□ -0.76
CD44-207ENST00000425428 FBXO43Q4G163 708 aa10.31□□□□□ -0.76
CD44-207ENST00000425428 INO80DQ53TQ3 878 aaPredicted RBP10.31□□□□□ -0.76
CD44-207ENST00000425428 TJAP1Q5JTD0 557 aa10.31□□□□□ -0.76
CD44-207ENST00000425428 AFMIDQ63HM1 303 aa10.31□□□□□ -0.76
CD44-207ENST00000425428 ARHGEF18Q6ZSZ5 1173 aa10.31□□□□□ -0.76
CD44-207ENST00000425428 NPWQ8N729 165 aa10.31□□□□□ -0.76
CD44-207ENST00000425428 DDX51Q8N8A6 666 aaKnown RBP eCLIP10.31□□□□□ -0.76
CD44-207ENST00000425428 TERB1Q8NA31 727 aa10.31□□□□□ -0.76
CD44-207ENST00000425428 C12orf50Q8NA57 414 aaPredicted RBP10.31□□□□□ -0.76
CD44-207ENST00000425428 FAM3CQ92520 227 aa10.31□□□□□ -0.76
CD44-207ENST00000425428 NKD2Q969F2 451 aaPredicted RBP10.31□□□□□ -0.76
CD44-207ENST00000425428 MYEOVQ96EZ4 313 aa10.31□□□□□ -0.76
CD44-207ENST00000425428 QKIQ96PU8 341 aaKnown RBP eCLIP10.31□□□□□ -0.76
CD44-207ENST00000425428 NELL2Q99435 816 aa10.31□□□□□ -0.76
CD44-207ENST00000425428 HEBP1Q9NRV9 189 aa10.31□□□□□ -0.76
CD44-207ENST00000425428 NDFIP2Q9NV92 336 aa10.31□□□□□ -0.76
CD44-207ENST00000425428 WNT16Q9UBV4 365 aa10.31□□□□□ -0.76
CD44-207ENST00000425428 SEPT3Q9UH03 358 aa10.31□□□□□ -0.76
CD44-207ENST00000425428 AMACRQ9UHK6 382 aa10.31□□□□□ -0.76
CD44-207ENST00000425428 FBXO10Q9UK96 956 aa10.31□□□□□ -0.76
CD44-207ENST00000425428 TRHDEQ9UKU6 1024 aa10.31□□□□□ -0.76
CD44-207ENST00000425428 DNPEPQ9ULA0 475 aa10.31□□□□□ -0.76
CD44-207ENST00000425428 NEU3Q9UQ49 428 aa10.31□□□□□ -0.76
CD44-207ENST00000425428 UTP11Q9Y3A2 253 aaKnown RBP10.31□□□□□ -0.76
CD44-207ENST00000425428 MYO18AQ92614 2054 aaKnown RBP10.31□□□□□ -0.76
CD44-207ENST00000425428 REV3LO60673 3130 aa10.3□□□□□ -0.76
CD44-207ENST00000425428 A0A0D9SEW6 157 aa10.3□□□□□ -0.76
CD44-207ENST00000425428 E7EVH7 732 aa10.3□□□□□ -0.76
CD44-207ENST00000425428 PRAMEF11O60813 436 aa10.3□□□□□ -0.76
CD44-207ENST00000425428 DLDP09622 509 aaKnown RBP10.3□□□□□ -0.76
CD44-207ENST00000425428 BMP1P13497 986 aa10.3□□□□□ -0.76
CD44-207ENST00000425428 CA4P22748 312 aa10.3□□□□□ -0.76
CD44-207ENST00000425428 MZF1P28698 734 aaPredicted RBP10.3□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 60.5 ms