RNA–Protein interactions for RNA: ENST00000425244.6

CUX1-205, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,776 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-205ENST00000425244 PLIN3O60664 434 aa10.9□□□□□ -0.66
CUX1-205ENST00000425244 GLRA3O75311 464 aa10.9□□□□□ -0.66
CUX1-205ENST00000425244 AP1G2O75843 785 aa10.9□□□□□ -0.66
CUX1-205ENST00000425244 POLBP06746 335 aa10.9□□□□□ -0.66
CUX1-205ENST00000425244 USP17L7P0C7H9 530 aa10.9□□□□□ -0.66
CUX1-205ENST00000425244 NCAM1P13591 858 aa10.9□□□□□ -0.66
CUX1-205ENST00000425244 ERCC2P18074 760 aa10.9□□□□□ -0.66
CUX1-205ENST00000425244 WARSP23381 471 aaKnown RBP10.9□□□□□ -0.66
CUX1-205ENST00000425244 LRPAP1P30533 357 aa10.9□□□□□ -0.66
CUX1-205ENST00000425244 SLC1A6P48664 564 aa10.9□□□□□ -0.66
CUX1-205ENST00000425244 GLUD2P49448 558 aa10.9□□□□□ -0.66
CUX1-205ENST00000425244 TPI1P60174 286 aa10.9□□□□□ -0.66
CUX1-205ENST00000425244 PPP2R5DQ14738 602 aa10.9□□□□□ -0.66
CUX1-205ENST00000425244 TSNAXIP1Q2TAA8 658 aa10.9□□□□□ -0.66
CUX1-205ENST00000425244 NOMO2Q5JPE7 1267 aa10.9□□□□□ -0.66
CUX1-205ENST00000425244 KIAA0319Q5VV43 1072 aa10.9□□□□□ -0.66
CUX1-205ENST00000425244 MBLAC2Q68D91 279 aa10.9□□□□□ -0.66
CUX1-205ENST00000425244 ANKRD33Q7Z3H0 272 aa10.9□□□□□ -0.66
CUX1-205ENST00000425244 WDR75Q8IWA0 830 aaKnown RBP10.9□□□□□ -0.66
CUX1-205ENST00000425244 ARHGAP24Q8N264 748 aa10.9□□□□□ -0.66
CUX1-205ENST00000425244 DNAJC9Q8WXX5 260 aa10.9□□□□□ -0.66
CUX1-205ENST00000425244 EDEM1Q92611 657 aa10.9□□□□□ -0.66
CUX1-205ENST00000425244 FTHL17Q9BXU8 183 aa10.9□□□□□ -0.66
CUX1-205ENST00000425244 C11orf49Q9H6J7 331 aa10.9□□□□□ -0.66
CUX1-205ENST00000425244 ANLNQ9NQW6 1124 aa10.9□□□□□ -0.66
CUX1-205ENST00000425244 DDIT4Q9NX09 232 aa10.9□□□□□ -0.66
CUX1-205ENST00000425244 CPSF2Q9P2I0 782 aaKnown RBP10.9□□□□□ -0.66
CUX1-205ENST00000425244 TAGLN3Q9UI15 199 aa10.9□□□□□ -0.66
CUX1-205ENST00000425244 RPL26L1Q9UNX3 145 aaKnown RBP10.9□□□□□ -0.66
CUX1-205ENST00000425244 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP10.89□□□□□ -0.67
CUX1-205ENST00000425244 NT5C1B-RDH14C9J2C7 533 aa10.89□□□□□ -0.67
CUX1-205ENST00000425244 ATP9BO43861 1147 aa10.89□□□□□ -0.67
CUX1-205ENST00000425244 LUC7L3O95232 432 aaKnown RBP10.89□□□□□ -0.67
CUX1-205ENST00000425244 PSMG1O95456 288 aa10.89□□□□□ -0.67
CUX1-205ENST00000425244 AMHP03971 560 aa10.89□□□□□ -0.67
CUX1-205ENST00000425244 FGF3P11487 239 aaPredicted RBP10.89□□□□□ -0.67
CUX1-205ENST00000425244 ABL2P42684 1182 aa10.89□□□□□ -0.67
CUX1-205ENST00000425244 TUSC3Q13454 348 aa10.89□□□□□ -0.67
CUX1-205ENST00000425244 DPYSQ14117 519 aa10.89□□□□□ -0.67
CUX1-205ENST00000425244 LIN28BQ6ZN17 250 aaKnown RBP eCLIP10.89□□□□□ -0.671e-8■■■■□ 26.3
CUX1-205ENST00000425244 GPRIN1Q7Z2K8 1008 aa10.89□□□□□ -0.67
CUX1-205ENST00000425244 TNS4Q8IZW8 715 aa10.89□□□□□ -0.67
CUX1-205ENST00000425244 TOP6BLQ8N6T0 577 aa10.89□□□□□ -0.67
CUX1-205ENST00000425244 CERS2Q96G23 380 aa10.89□□□□□ -0.67
CUX1-205ENST00000425244 FCRL3Q96P31 734 aaPredicted RBP10.89□□□□□ -0.67
CUX1-205ENST00000425244 SHCBP1LQ9BZQ2 653 aa10.89□□□□□ -0.67
CUX1-205ENST00000425244 EIF2B3Q9NR50 452 aaKnown RBP10.89□□□□□ -0.67
CUX1-205ENST00000425244 TBC1D13Q9NVG8 400 aa10.89□□□□□ -0.67
CUX1-205ENST00000425244 UBP1Q9NZI7 540 aa10.89□□□□□ -0.67
CUX1-205ENST00000425244 TMEM216Q9P0N5 145 aa10.89□□□□□ -0.67
CUX1-205ENST00000425244 NVLO15381 856 aaKnown RBP10.89□□□□□ -0.67
CUX1-205ENST00000425244 EOMESO95936 686 aa10.89□□□□□ -0.67
CUX1-205ENST00000425244 GSRP00390 522 aa10.89□□□□□ -0.67
CUX1-205ENST00000425244 ITGB8P26012 769 aa10.89□□□□□ -0.67
CUX1-205ENST00000425244 PTPN3P26045 913 aa10.89□□□□□ -0.67
CUX1-205ENST00000425244 ADRA1BP35368 520 aa10.89□□□□□ -0.67
CUX1-205ENST00000425244 TEDDM1Q5T9Z0 273 aa10.89□□□□□ -0.67
CUX1-205ENST00000425244 SNX30Q5VWJ9 437 aa10.89□□□□□ -0.67
CUX1-205ENST00000425244 TMPRSS6Q8IU80 811 aa10.89□□□□□ -0.67
CUX1-205ENST00000425244 POU5F2Q8N7G0 328 aa10.89□□□□□ -0.67
CUX1-205ENST00000425244 KLHL23Q8NBE8 558 aa10.89□□□□□ -0.67
CUX1-205ENST00000425244 CFAP61Q8NHU2 1237 aa10.89□□□□□ -0.67
CUX1-205ENST00000425244 RAB3IL1Q8TBN0 382 aa10.89□□□□□ -0.67
CUX1-205ENST00000425244 PIWIL2Q8TC59 973 aaKnown RBP10.89□□□□□ -0.67
CUX1-205ENST00000425244 URGCPQ8TCY9 931 aa10.89□□□□□ -0.67
CUX1-205ENST00000425244 PPP4R1Q8TF05 950 aa10.89□□□□□ -0.67
CUX1-205ENST00000425244 ARMC5Q96C12 935 aa10.89□□□□□ -0.67
CUX1-205ENST00000425244 ZNF778Q96MU6 729 aa10.89□□□□□ -0.67
CUX1-205ENST00000425244 AGAP2Q99490 1192 aa10.89□□□□□ -0.67
CUX1-205ENST00000425244 RHOBTB2Q9BYZ6 727 aa10.89□□□□□ -0.67
CUX1-205ENST00000425244 CRTAC1Q9NQ79 661 aa10.89□□□□□ -0.67
CUX1-205ENST00000425244 BATF3Q9NR55 127 aa10.89□□□□□ -0.67
CUX1-205ENST00000425244 PNPOQ9NVS9 261 aa10.89□□□□□ -0.67
CUX1-205ENST00000425244 NMRK1Q9NWW6 199 aa10.89□□□□□ -0.67
CUX1-205ENST00000425244 VANGL2Q9ULK5 521 aa10.89□□□□□ -0.67
CUX1-205ENST00000425244 LRRC42Q9Y546 428 aa10.89□□□□□ -0.67
CUX1-205ENST00000425244 MRPL42Q9Y6G3 142 aaKnown RBP10.89□□□□□ -0.67
CUX1-205ENST00000425244 MYBPHLA2RUH7 354 aa10.88□□□□□ -0.67
CUX1-205ENST00000425244 GOLGA8TH3BQL2 631 aa10.88□□□□□ -0.67
CUX1-205ENST00000425244 DCLK1O15075 740 aa10.88□□□□□ -0.67
CUX1-205ENST00000425244 CIB2O75838 187 aa10.88□□□□□ -0.67
CUX1-205ENST00000425244 CLTBP09497 229 aa10.88□□□□□ -0.67
CUX1-205ENST00000425244 TPH1P17752 444 aa10.88□□□□□ -0.67
CUX1-205ENST00000425244 GP5P40197 560 aa10.88□□□□□ -0.67
CUX1-205ENST00000425244 ITGA9Q13797 1035 aa10.88□□□□□ -0.67
CUX1-205ENST00000425244 PCLAFQ15004 111 aa10.88□□□□□ -0.67
CUX1-205ENST00000425244 STRA8Q7Z7C7 330 aa10.88□□□□□ -0.67
CUX1-205ENST00000425244 CCNJLQ8IV13 435 aa10.88□□□□□ -0.67
CUX1-205ENST00000425244 PSTKQ8IV42 348 aaKnown RBP10.88□□□□□ -0.67
CUX1-205ENST00000425244 SLC25A41Q8N5S1 370 aa10.88□□□□□ -0.67
CUX1-205ENST00000425244 NPWQ8N729 165 aa10.88□□□□□ -0.67
CUX1-205ENST00000425244 AGR3Q8TD06 166 aa10.88□□□□□ -0.67
CUX1-205ENST00000425244 ACMSDQ8TDX5 336 aa10.88□□□□□ -0.67
CUX1-205ENST00000425244 B3GALT6Q96L58 329 aa10.88□□□□□ -0.67
CUX1-205ENST00000425244 SYT15Q9BQS2 421 aa10.88□□□□□ -0.67
CUX1-205ENST00000425244 NAT9Q9BTE0 207 aa10.88□□□□□ -0.67
CUX1-205ENST00000425244 OSBPL1AQ9BXW6 950 aa10.88□□□□□ -0.67
CUX1-205ENST00000425244 CAB39LQ9H9S4 337 aa10.88□□□□□ -0.67
CUX1-205ENST00000425244 SPATS2LQ9NUQ6 558 aaKnown RBP10.88□□□□□ -0.67
CUX1-205ENST00000425244 BFARQ9NZS9 450 aa10.88□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 87.7 ms