RNA–Protein interactions for RNA: ENST00000419110.5

HMGB3-202, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 3

Gene HMGB3, Length 707 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-202ENST00000419110 CPT1BQ92523 772 aa6.1□□□□□ -1.43
HMGB3-202ENST00000419110 SMG7Q92540 1137 aaKnown RBP6.1□□□□□ -1.43
HMGB3-202ENST00000419110 MRPL38Q96DV4 380 aaKnown RBP6.1□□□□□ -1.43
HMGB3-202ENST00000419110 HMCESQ96FZ2 354 aa6.1□□□□□ -1.43
HMGB3-202ENST00000419110 P2RY11Q96G91 374 aa6.1□□□□□ -1.43
HMGB3-202ENST00000419110 RBM15Q96T37 977 aaKnown RBP eCLIP6.1□□□□□ -1.43
HMGB3-202ENST00000419110 PRMT1Q99873 361 aaKnown RBP6.1□□□□□ -1.43
HMGB3-202ENST00000419110 KLF16Q9BXK1 252 aaPredicted RBP6.1□□□□□ -1.43
HMGB3-202ENST00000419110 FUT8Q9BYC5 575 aa6.1□□□□□ -1.43
HMGB3-202ENST00000419110 CDC42EP4Q9H3Q1 356 aaKnown RBP6.1□□□□□ -1.43
HMGB3-202ENST00000419110 NSUN3Q9H649 340 aaKnown RBP6.1□□□□□ -1.43
HMGB3-202ENST00000419110 TASP1Q9H6P5 420 aa6.1□□□□□ -1.43
HMGB3-202ENST00000419110 C10orf88Q9H8K7 445 aa6.1□□□□□ -1.43
HMGB3-202ENST00000419110 CERS4Q9HA82 394 aa6.1□□□□□ -1.43
HMGB3-202ENST00000419110 MED4Q9NPJ6 270 aa6.1□□□□□ -1.43
HMGB3-202ENST00000419110 ZNF446Q9NWS9 450 aa6.1□□□□□ -1.43
HMGB3-202ENST00000419110 HCFC1R1Q9NWW0 138 aa6.1□□□□□ -1.43
HMGB3-202ENST00000419110 MPP6Q9NZW5 540 aa6.1□□□□□ -1.43
HMGB3-202ENST00000419110 CFAP97Q9P2B7 532 aa6.1□□□□□ -1.43
HMGB3-202ENST00000419110 IGSF9Q9P2J2 1179 aa6.1□□□□□ -1.43
HMGB3-202ENST00000419110 FAM153AQ9UHL3 310 aa6.1□□□□□ -1.43
HMGB3-202ENST00000419110 TRANK1O15050 2925 aa6.1□□□□□ -1.43
HMGB3-202ENST00000419110 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP6.09□□□□□ -1.43
HMGB3-202ENST00000419110 H0YGN5 161 aa6.09□□□□□ -1.43
HMGB3-202ENST00000419110 GOLGA8MH3BSY2 632 aa6.09□□□□□ -1.43
HMGB3-202ENST00000419110 KCNK1O00180 336 aa6.09□□□□□ -1.43
HMGB3-202ENST00000419110 AP3B1O00203 1094 aa6.09□□□□□ -1.43
HMGB3-202ENST00000419110 MAP2K7O14733 419 aa6.09□□□□□ -1.43
HMGB3-202ENST00000419110 OPA1O60313 960 aa6.09□□□□□ -1.43
HMGB3-202ENST00000419110 SPAG6O75602 509 aa6.09□□□□□ -1.43
HMGB3-202ENST00000419110 LUC7L3O95232 432 aaKnown RBP6.09□□□□□ -1.43
HMGB3-202ENST00000419110 ACSL3O95573 720 aa6.09□□□□□ -1.43
HMGB3-202ENST00000419110 ABHD2P08910 425 aa6.09□□□□□ -1.43
HMGB3-202ENST00000419110 NUDT17P0C025 328 aa6.09□□□□□ -1.43
HMGB3-202ENST00000419110 CEBPBP17676 345 aa6.09□□□□□ -1.43
HMGB3-202ENST00000419110 NFKB1P19838 968 aa6.09□□□□□ -1.43
HMGB3-202ENST00000419110 CCNCP24863 283 aa6.09□□□□□ -1.43
HMGB3-202ENST00000419110 IVDP26440 423 aa6.09□□□□□ -1.43
HMGB3-202ENST00000419110 OR1E1P30953 314 aa6.09□□□□□ -1.43
HMGB3-202ENST00000419110 SLC6A4P31645 630 aa6.09□□□□□ -1.43
HMGB3-202ENST00000419110 BMP8BP34820 402 aa6.09□□□□□ -1.43
HMGB3-202ENST00000419110 HSD17B3P37058 310 aa6.09□□□□□ -1.43
HMGB3-202ENST00000419110 IRAK1P51617 712 aa6.09□□□□□ -1.43
HMGB3-202ENST00000419110 OXCT1P55809 520 aa6.09□□□□□ -1.43
HMGB3-202ENST00000419110 GEMIN4P57678 1058 aaKnown RBP6.09□□□□□ -1.43
HMGB3-202ENST00000419110 PRR20EP86478 221 aa6.09□□□□□ -1.43
HMGB3-202ENST00000419110 PRR20CP86479 221 aa6.09□□□□□ -1.43
HMGB3-202ENST00000419110 PRR20DP86480 221 aa6.09□□□□□ -1.43
HMGB3-202ENST00000419110 PRR20BP86481 221 aa6.09□□□□□ -1.43
HMGB3-202ENST00000419110 PRR20AP86496 221 aa6.09□□□□□ -1.43
HMGB3-202ENST00000419110 CDK16Q00536 496 aa6.09□□□□□ -1.43
HMGB3-202ENST00000419110 SLC10A2Q12908 348 aaPredicted RBP6.09□□□□□ -1.43
HMGB3-202ENST00000419110 ZBTB17Q13105 803 aa6.09□□□□□ -1.43
HMGB3-202ENST00000419110 ZNF177Q13360 481 aaPredicted RBP6.09□□□□□ -1.43
HMGB3-202ENST00000419110 POLD3Q15054 466 aaPredicted RBP6.09□□□□□ -1.43
HMGB3-202ENST00000419110 TEAD2Q15562 447 aa6.09□□□□□ -1.43
HMGB3-202ENST00000419110 TRADDQ15628 312 aa6.09□□□□□ -1.43
HMGB3-202ENST00000419110 C5orf22Q49AR2 442 aa6.09□□□□□ -1.43
HMGB3-202ENST00000419110 ALFQ53S48 1182 aa6.09□□□□□ -1.43
HMGB3-202ENST00000419110 ANKRD20A2Q5SQ80 823 aa6.09□□□□□ -1.43
HMGB3-202ENST00000419110 FAXCQ5TGI0 409 aa6.09□□□□□ -1.43
HMGB3-202ENST00000419110 ANKRD20A1Q5TYW2 823 aa6.09□□□□□ -1.43
HMGB3-202ENST00000419110 ANKRD20A3Q5VUR7 823 aa6.09□□□□□ -1.43
HMGB3-202ENST00000419110 AFMIDQ63HM1 303 aa6.09□□□□□ -1.43
HMGB3-202ENST00000419110 RFWD3Q6PCD5 774 aa6.09□□□□□ -1.43
HMGB3-202ENST00000419110 ADGRD2Q7Z7M1 963 aa6.09□□□□□ -1.43
HMGB3-202ENST00000419110 PRUNE1Q86TP1 453 aa6.09□□□□□ -1.43
HMGB3-202ENST00000419110 SETD3Q86TU7 594 aaPredicted RBP6.09□□□□□ -1.43
HMGB3-202ENST00000419110 MFN1Q8IWA4 741 aa6.09□□□□□ -1.43
HMGB3-202ENST00000419110 ZBED8Q8IZ13 594 aa6.09□□□□□ -1.43
HMGB3-202ENST00000419110 CMTM8Q8IZV2 173 aa6.09□□□□□ -1.43
HMGB3-202ENST00000419110 ZNF567Q8N184 647 aa6.09□□□□□ -1.43
HMGB3-202ENST00000419110 KRT222Q8N1A0 295 aa6.09□□□□□ -1.43
HMGB3-202ENST00000419110 CPXM2Q8N436 756 aa6.09□□□□□ -1.43
HMGB3-202ENST00000419110 TAB3Q8N5C8 712 aaPredicted RBP6.09□□□□□ -1.43
HMGB3-202ENST00000419110 NAT8LQ8N9F0 302 aa6.09□□□□□ -1.43
HMGB3-202ENST00000419110 TDRD5Q8NAT2 981 aaKnown RBP6.09□□□□□ -1.43
HMGB3-202ENST00000419110 TSEN2Q8NCE0 465 aaKnown RBP6.09□□□□□ -1.43
HMGB3-202ENST00000419110 MCUQ8NE86 351 aa6.09□□□□□ -1.43
HMGB3-202ENST00000419110 DEPDC1BQ8WUY9 529 aa6.09□□□□□ -1.43
HMGB3-202ENST00000419110 FATE1Q969F0 183 aa6.09□□□□□ -1.43
HMGB3-202ENST00000419110 IGSF8Q969P0 613 aa6.09□□□□□ -1.43
HMGB3-202ENST00000419110 PABPC5Q96DU9 382 aaKnown RBP6.09□□□□□ -1.43
HMGB3-202ENST00000419110 ZNF599Q96NL3 588 aa6.09□□□□□ -1.43
HMGB3-202ENST00000419110 TSGA13Q96PP4 275 aa6.09□□□□□ -1.43
HMGB3-202ENST00000419110 SPSB2Q99619 263 aa6.09□□□□□ -1.43
HMGB3-202ENST00000419110 FSD1LQ9BXM9 530 aa6.09□□□□□ -1.43
HMGB3-202ENST00000419110 LRRC3Q9BY71 257 aa6.09□□□□□ -1.43
HMGB3-202ENST00000419110 CEP41Q9BYV8 373 aa6.09□□□□□ -1.43
HMGB3-202ENST00000419110 MAGEB5Q9BZ81 275 aa6.09□□□□□ -1.43
HMGB3-202ENST00000419110 STMN4Q9H169 189 aaPredicted RBP6.09□□□□□ -1.43
HMGB3-202ENST00000419110 MUC3BQ9H195 1237 aa6.09□□□□□ -1.43
HMGB3-202ENST00000419110 MAGEH1Q9H213 219 aa6.09□□□□□ -1.43
HMGB3-202ENST00000419110 PABPC3Q9H361 631 aaKnown RBP6.09□□□□□ -1.43
HMGB3-202ENST00000419110 LRRC40Q9H9A6 602 aa6.09□□□□□ -1.43
HMGB3-202ENST00000419110 USP29Q9HBJ7 922 aa6.09□□□□□ -1.43
HMGB3-202ENST00000419110 SAYSD1Q9NPB0 183 aa6.09□□□□□ -1.43
HMGB3-202ENST00000419110 DNAJC17Q9NVM6 304 aaKnown RBP6.09□□□□□ -1.43
HMGB3-202ENST00000419110 IPO11Q9UI26 975 aaKnown RBP6.09□□□□□ -1.43
HMGB3-202ENST00000419110 STOML2Q9UJZ1 356 aa6.09□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 61.3 ms