RNA–Protein interactions for RNA: ENST00000413442.5

USP54-202, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 543 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-202ENST00000413442 TMEFF1Q8IYR6 380 aa6.55□□□□□ -1.36
USP54-202ENST00000413442 APCDD1Q8J025 514 aa6.55□□□□□ -1.36
USP54-202ENST00000413442 UMODL1-AS1Q8N2C9 162 aa6.55□□□□□ -1.36
USP54-202ENST00000413442 SH2D3CQ8N5H7 860 aa6.55□□□□□ -1.36
USP54-202ENST00000413442 NIPA2Q8N8Q9 360 aa6.55□□□□□ -1.36
USP54-202ENST00000413442 OR2T34Q8NGX1 318 aa6.55□□□□□ -1.36
USP54-202ENST00000413442 FRS2Q8WU20 508 aa6.55□□□□□ -1.36
USP54-202ENST00000413442 RLN3Q8WXF3 142 aa6.55□□□□□ -1.36
USP54-202ENST00000413442 ASB12Q8WXK4 309 aa6.55□□□□□ -1.36
USP54-202ENST00000413442 PIGKQ92643 395 aa6.55□□□□□ -1.36
USP54-202ENST00000413442 ARHGEF26Q96DR7 871 aa6.55□□□□□ -1.36
USP54-202ENST00000413442 TOE1Q96GM8 510 aaKnown RBP6.55□□□□□ -1.36
USP54-202ENST00000413442 PPP1R16AQ96I34 528 aa6.55□□□□□ -1.36
USP54-202ENST00000413442 OMDQ99983 421 aa6.55□□□□□ -1.36
USP54-202ENST00000413442 OSBPL1AQ9BXW6 950 aa6.55□□□□□ -1.36
USP54-202ENST00000413442 ACE2Q9BYF1 805 aaPredicted RBP6.55□□□□□ -1.36
USP54-202ENST00000413442 PABPC3Q9H361 631 aaKnown RBP6.55□□□□□ -1.36
USP54-202ENST00000413442 LUC7LQ9NQ29 371 aaKnown RBP6.55□□□□□ -1.36
USP54-202ENST00000413442 TMEM9BQ9NQ34 198 aa6.55□□□□□ -1.36
USP54-202ENST00000413442 FBXL12Q9NXK8 326 aa6.55□□□□□ -1.36
USP54-202ENST00000413442 COX16Q9P0S2 106 aa6.55□□□□□ -1.36
USP54-202ENST00000413442 IFNKQ9P0W0 207 aa6.55□□□□□ -1.36
USP54-202ENST00000413442 RCOR3Q9P2K3 495 aaPredicted RBP6.55□□□□□ -1.36
USP54-202ENST00000413442 UVRAGQ9P2Y5 699 aa6.55□□□□□ -1.36
USP54-202ENST00000413442 IP6K2Q9UHH9 426 aa6.55□□□□□ -1.36
USP54-202ENST00000413442 XPO7Q9UIA9 1087 aaKnown RBP6.55□□□□□ -1.36
USP54-202ENST00000413442 SLCO3A1Q9UIG8 710 aa6.55□□□□□ -1.36
USP54-202ENST00000413442 INTUQ9ULD6 942 aa6.55□□□□□ -1.36
USP54-202ENST00000413442 PPM1HQ9ULR3 514 aa6.55□□□□□ -1.36
USP54-202ENST00000413442 FZD10Q9ULW2 581 aa6.55□□□□□ -1.36
USP54-202ENST00000413442 PCDHGB2Q9Y5G2 931 aa6.55□□□□□ -1.36
USP54-202ENST00000413442 LOC105378220A0A1B0GUY1 285 aaPredicted RBP6.54□□□□□ -1.36
USP54-202ENST00000413442 DDX3XO00571 662 aaKnown RBP eCLIP6.54□□□□□ -1.36
USP54-202ENST00000413442 ARHGAP33O14559 1287 aa6.54□□□□□ -1.36
USP54-202ENST00000413442 BCAT2O15382 392 aaPredicted RBP6.54□□□□□ -1.36
USP54-202ENST00000413442 YKT6O15498 198 aa6.54□□□□□ -1.36
USP54-202ENST00000413442 KDELR3O43731 214 aa6.54□□□□□ -1.36
USP54-202ENST00000413442 PRPSAP2O60256 369 aa6.54□□□□□ -1.36
USP54-202ENST00000413442 RAMP2O60895 175 aa6.54□□□□□ -1.36
USP54-202ENST00000413442 SIN3BO75182 1162 aa6.54□□□□□ -1.36
USP54-202ENST00000413442 LRIG2O94898 1065 aa6.54□□□□□ -1.36
USP54-202ENST00000413442 SEMA4FO95754 770 aa6.54□□□□□ -1.36
USP54-202ENST00000413442 CER1O95813 267 aa6.54□□□□□ -1.36
USP54-202ENST00000413442 H2AFZP0C0S5 128 aa6.54□□□□□ -1.36
USP54-202ENST00000413442 CDK4P11802 303 aa6.54□□□□□ -1.36
USP54-202ENST00000413442 CEACAM1P13688 526 aa6.54□□□□□ -1.36
USP54-202ENST00000413442 CES1P23141 567 aa6.54□□□□□ -1.36
USP54-202ENST00000413442 RRM1P23921 792 aa6.54□□□□□ -1.36
USP54-202ENST00000413442 NFKBIAP25963 317 aa6.54□□□□□ -1.36
USP54-202ENST00000413442 MZF1P28698 734 aaPredicted RBP6.54□□□□□ -1.36
USP54-202ENST00000413442 EPHB2P29323 1055 aa6.54□□□□□ -1.36
USP54-202ENST00000413442 ARHGAP25P42331 645 aa6.54□□□□□ -1.36
USP54-202ENST00000413442 GRIA4P48058 902 aa6.54□□□□□ -1.36
USP54-202ENST00000413442 CSNK1DP48730 415 aa6.54□□□□□ -1.36
USP54-202ENST00000413442 SGSHP51688 502 aa6.54□□□□□ -1.36
USP54-202ENST00000413442 AFF3P51826 1226 aaKnown RBP6.54□□□□□ -1.36
USP54-202ENST00000413442 ATXN1P54253 815 aaKnown RBP6.54□□□□□ -1.36
USP54-202ENST00000413442 SNRPD1P62314 119 aaKnown RBP6.54□□□□□ -1.36
USP54-202ENST00000413442 RACK1P63244 317 aaKnown RBP6.54□□□□□ -1.36
USP54-202ENST00000413442 NSUN2Q08J23 767 aaKnown RBP eCLIP6.54□□□□□ -1.36
USP54-202ENST00000413442 RFTN1Q14699 578 aaPredicted RBP6.54□□□□□ -1.36
USP54-202ENST00000413442 SLC18A3Q16572 532 aa6.54□□□□□ -1.36
USP54-202ENST00000413442 TDRD12Q587J7 1177 aaKnown RBP6.54□□□□□ -1.36
USP54-202ENST00000413442 TRIM61Q5EBN2 209 aa6.54□□□□□ -1.36
USP54-202ENST00000413442 RALGPS1Q5JS13 557 aa6.54□□□□□ -1.36
USP54-202ENST00000413442 STPG1Q5TH74 334 aa6.54□□□□□ -1.36
USP54-202ENST00000413442 OTUD1Q5VV17 481 aaPredicted RBP6.54□□□□□ -1.36
USP54-202ENST00000413442 HGSNATQ68CP4 663 aa6.54□□□□□ -1.36
USP54-202ENST00000413442 SCYL2Q6P3W7 929 aa6.54□□□□□ -1.36
USP54-202ENST00000413442 ALKBH5Q6P6C2 394 aaKnown RBP6.54□□□□□ -1.36
USP54-202ENST00000413442 H2AFVQ71UI9 128 aa6.54□□□□□ -1.36
USP54-202ENST00000413442 DGLUCYQ7Z3D6 616 aa6.54□□□□□ -1.36
USP54-202ENST00000413442 TMC6Q7Z403 805 aa6.54□□□□□ -1.36
USP54-202ENST00000413442 C14orf80Q86SX3 495 aa6.54□□□□□ -1.36
USP54-202ENST00000413442 NLRP14Q86W24 1093 aa6.54□□□□□ -1.36
USP54-202ENST00000413442 FAM131BQ86XD5 332 aa6.54□□□□□ -1.36
USP54-202ENST00000413442 VSIG1Q86XK7 387 aa6.54□□□□□ -1.36
USP54-202ENST00000413442 MAP7D3Q8IWC1 876 aa6.54□□□□□ -1.36
USP54-202ENST00000413442 RGL4Q8IZJ4 473 aa6.54□□□□□ -1.36
USP54-202ENST00000413442 HDDC3Q8N4P3 179 aa6.54□□□□□ -1.36
USP54-202ENST00000413442 OXR1Q8N573 874 aa6.54□□□□□ -1.36
USP54-202ENST00000413442 EMC1Q8N766 993 aa6.54□□□□□ -1.36
USP54-202ENST00000413442 RTL3Q8N8U3 475 aaKnown RBP6.54□□□□□ -1.36
USP54-202ENST00000413442 ATP11CQ8NB49 1132 aa6.54□□□□□ -1.36
USP54-202ENST00000413442 JOSD2Q8TAC2 188 aa6.54□□□□□ -1.36
USP54-202ENST00000413442 WFDC5Q8TCV5 224 aa6.54□□□□□ -1.36
USP54-202ENST00000413442 CYB5D2Q8WUJ1 264 aa6.54□□□□□ -1.36
USP54-202ENST00000413442 TEKT4Q8WW24 435 aa6.54□□□□□ -1.36
USP54-202ENST00000413442 SORCS1Q8WY21 1168 aa6.54□□□□□ -1.36
USP54-202ENST00000413442 ARHGEF2Q92974 986 aaKnown RBP6.54□□□□□ -1.36
USP54-202ENST00000413442 P2RY11Q96G91 374 aa6.54□□□□□ -1.36
USP54-202ENST00000413442 FAM129BQ96TA1 746 aa6.54□□□□□ -1.36
USP54-202ENST00000413442 DNAJC7Q99615 494 aa6.54□□□□□ -1.36
USP54-202ENST00000413442 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP6.54□□□□□ -1.36
USP54-202ENST00000413442 GPR174Q9BXC1 333 aa6.54□□□□□ -1.36
USP54-202ENST00000413442 HDAC8Q9BY41 377 aa6.54□□□□□ -1.36
USP54-202ENST00000413442 CPEB1Q9BZB8 566 aaKnown RBP6.54□□□□□ -1.36
USP54-202ENST00000413442 XPO4Q9C0E2 1151 aaKnown RBP6.54□□□□□ -1.36
USP54-202ENST00000413442 SLC32A1Q9H598 525 aa6.54□□□□□ -1.36
USP54-202ENST00000413442 ZWILCHQ9H900 591 aa6.54□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms