RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 ENO3P13929 434 aaPredicted RBP13.65□□□□□ -0.22
VPS54-203ENST00000409558 ABL2P42684 1182 aa13.65□□□□□ -0.22
VPS54-203ENST00000409558 EFEMP1Q12805 493 aa13.65□□□□□ -0.22
VPS54-203ENST00000409558 PDPK2PQ6A1A2 396 aa13.65□□□□□ -0.22
VPS54-203ENST00000409558 OVOS1Q6IE37 1185 aa13.65□□□□□ -0.22
VPS54-203ENST00000409558 TTC9BQ8N6N2 239 aa13.65□□□□□ -0.22
VPS54-203ENST00000409558 ATAD1Q8NBU5 361 aa13.65□□□□□ -0.22
VPS54-203ENST00000409558 PPFIBP2Q8ND30 876 aa13.65□□□□□ -0.22
VPS54-203ENST00000409558 OR10T2Q8NGX3 314 aa13.65□□□□□ -0.22
VPS54-203ENST00000409558 URGCPQ8TCY9 931 aa13.65□□□□□ -0.22
VPS54-203ENST00000409558 NRG4Q8WWG1 115 aa13.65□□□□□ -0.22
VPS54-203ENST00000409558 OR52B2Q96RD2 323 aa13.65□□□□□ -0.22
VPS54-203ENST00000409558 ATP6AP2A0A1C7CYW4 349 aa13.65□□□□□ -0.22
VPS54-203ENST00000409558 ATP6AP2O75787 350 aa13.65□□□□□ -0.22
VPS54-203ENST00000409558 PSMG1O95456 288 aa13.65□□□□□ -0.22
VPS54-203ENST00000409558 CHRNA1P02708 482 aa13.65□□□□□ -0.22
VPS54-203ENST00000409558 TPSB2P20231 275 aa13.65□□□□□ -0.22
VPS54-203ENST00000409558 ARL1P40616 181 aaPredicted RBP13.65□□□□□ -0.22
VPS54-203ENST00000409558 SERPINB9P50453 376 aa13.65□□□□□ -0.22
VPS54-203ENST00000409558 TUBP50607 506 aa13.65□□□□□ -0.22
VPS54-203ENST00000409558 PURAQ00577 322 aaKnown RBP13.65□□□□□ -0.22
VPS54-203ENST00000409558 TPSAB1Q15661 275 aa13.65□□□□□ -0.22
VPS54-203ENST00000409558 TMEM154Q6P9G4 183 aa13.65□□□□□ -0.22
VPS54-203ENST00000409558 PDZD4Q76G19 769 aaPredicted RBP13.65□□□□□ -0.22
VPS54-203ENST00000409558 CHSY1Q86X52 802 aa13.65□□□□□ -0.22
VPS54-203ENST00000409558 ULK2Q8IYT8 1036 aa13.65□□□□□ -0.22
VPS54-203ENST00000409558 MAPK15Q8TD08 544 aa13.65□□□□□ -0.22
VPS54-203ENST00000409558 CENPIQ92674 756 aaPredicted RBP13.65□□□□□ -0.22
VPS54-203ENST00000409558 DNAI2Q9GZS0 605 aa13.65□□□□□ -0.22
VPS54-203ENST00000409558 WDR6Q9NNW5 1121 aaKnown RBP13.65□□□□□ -0.22
VPS54-203ENST00000409558 NT5MQ9NPB1 228 aa13.65□□□□□ -0.22
VPS54-203ENST00000409558 COPG2Q9UBF2 871 aa13.65□□□□□ -0.22
VPS54-203ENST00000409558 SUFUQ9UMX1 484 aa13.65□□□□□ -0.22
VPS54-203ENST00000409558 GABRQQ9UN88 632 aa13.65□□□□□ -0.22
VPS54-203ENST00000409558 A0A0U1RQS6 177 aa13.64□□□□□ -0.23
VPS54-203ENST00000409558 PALM2-AKAP2B1ALY0 433 aaPredicted RBP13.64□□□□□ -0.23
VPS54-203ENST00000409558 SPRP35270 261 aaPredicted RBP13.64□□□□□ -0.23
VPS54-203ENST00000409558 GSCP56915 257 aaPredicted RBP13.64□□□□□ -0.23
VPS54-203ENST00000409558 MRPS6P82932 125 aaKnown RBP13.64□□□□□ -0.23
VPS54-203ENST00000409558 CSHL1Q14406 222 aa13.64□□□□□ -0.23
VPS54-203ENST00000409558 LPCAT4Q643R3 524 aa13.64□□□□□ -0.23
VPS54-203ENST00000409558 METTL23Q86XA0 190 aa13.64□□□□□ -0.23
VPS54-203ENST00000409558 SPATA2LQ8IUW3 424 aaPredicted RBP13.64□□□□□ -0.23
VPS54-203ENST00000409558 COG4Q9H9E3 785 aa13.64□□□□□ -0.23
VPS54-203ENST00000409558 SLC7A8Q9UHI5 535 aa13.64□□□□□ -0.23
VPS54-203ENST00000409558 USP3Q9Y6I4 520 aa13.64□□□□□ -0.23
VPS54-203ENST00000409558 UNC80Q8N2C7 3258 aa13.64□□□□□ -0.23
VPS54-203ENST00000409558 MX2P20592 715 aa13.64□□□□□ -0.23
VPS54-203ENST00000409558 SKIV2L2P42285 1042 aaKnown RBP13.64□□□□□ -0.23
VPS54-203ENST00000409558 SLC12A2P55011 1212 aa13.64□□□□□ -0.23
VPS54-203ENST00000409558 ZNF470Q6ECI4 717 aa13.64□□□□□ -0.23
VPS54-203ENST00000409558 TRIM42Q8IWZ5 723 aa13.64□□□□□ -0.23
VPS54-203ENST00000409558 CNTD1Q8N815 330 aa13.64□□□□□ -0.23
VPS54-203ENST00000409558 EXOC2Q96KP1 924 aa13.64□□□□□ -0.23
VPS54-203ENST00000409558 FCRL2Q96LA5 508 aaPredicted RBP13.64□□□□□ -0.23
VPS54-203ENST00000409558 OLFM3Q96PB7 478 aa13.64□□□□□ -0.23
VPS54-203ENST00000409558 MORF4L1Q9UBU8 362 aa13.64□□□□□ -0.23
VPS54-203ENST00000409558 ABT1Q9ULW3 272 aaKnown RBP13.64□□□□□ -0.23
VPS54-203ENST00000409558 CRYL1Q9Y2S2 319 aa13.64□□□□□ -0.23
VPS54-203ENST00000409558 ACTL7AQ9Y615 435 aa13.64□□□□□ -0.23
VPS54-203ENST00000409558 TLL2Q9Y6L7 1015 aa13.64□□□□□ -0.23
VPS54-203ENST00000409558 SIN3BO75182 1162 aa13.64□□□□□ -0.23
VPS54-203ENST00000409558 PAGE1O75459 146 aa13.64□□□□□ -0.23
VPS54-203ENST00000409558 MBLAC2Q68D91 279 aa13.64□□□□□ -0.23
VPS54-203ENST00000409558 C14orf80Q86SX3 495 aa13.64□□□□□ -0.23
VPS54-203ENST00000409558 TMA16Q96EY4 203 aaKnown RBP13.64□□□□□ -0.23
VPS54-203ENST00000409558 DCLRE1BQ9H816 532 aa13.64□□□□□ -0.23
VPS54-203ENST00000409558 SIRPGQ9P1W8 387 aa13.64□□□□□ -0.23
VPS54-203ENST00000409558 STOML1Q9UBI4 398 aa13.64□□□□□ -0.23
VPS54-203ENST00000409558 TAGLN3Q9UI15 199 aa13.64□□□□□ -0.23
VPS54-203ENST00000409558 PPM1HQ9ULR3 514 aa13.64□□□□□ -0.23
VPS54-203ENST00000409558 NUDT2P50583 147 aa13.63□□□□□ -0.23
VPS54-203ENST00000409558 CASP10Q92851 521 aa13.63□□□□□ -0.23
VPS54-203ENST00000409558 KCNN1Q92952 543 aa13.63□□□□□ -0.23
VPS54-203ENST00000409558 SUDS3Q9H7L9 328 aaPredicted RBP13.63□□□□□ -0.23
VPS54-203ENST00000409558 GDAP2Q9NXN4 497 aa13.63□□□□□ -0.23
VPS54-203ENST00000409558 KCNK4Q9NYG8 393 aa13.63□□□□□ -0.23
VPS54-203ENST00000409558 STX16-NPEPL1H3BU86 382 aa13.63□□□□□ -0.23
VPS54-203ENST00000409558 ITGA7Q13683 1181 aa13.63□□□□□ -0.23
VPS54-203ENST00000409558 GRAMD1BQ3KR37 738 aa13.63□□□□□ -0.23
VPS54-203ENST00000409558 RABGAP1LQ5R372 815 aa13.63□□□□□ -0.23
VPS54-203ENST00000409558 CFAP52Q8N1V2 620 aa13.63□□□□□ -0.23
VPS54-203ENST00000409558 TDRD5Q8NAT2 981 aaKnown RBP13.63□□□□□ -0.23
VPS54-203ENST00000409558 RTP4Q96DX8 246 aa13.63□□□□□ -0.23
VPS54-203ENST00000409558 NMRAL1Q9HBL8 299 aa13.63□□□□□ -0.23
VPS54-203ENST00000409558 SAR1AQ9NR31 198 aa13.63□□□□□ -0.23
VPS54-203ENST00000409558 FBXW11Q9UKB1 542 aa13.63□□□□□ -0.23
VPS54-203ENST00000409558 ANK1P16157 1881 aa13.63□□□□□ -0.23
VPS54-203ENST00000409558 GOLGA4Q13439 2230 aaKnown RBP13.63□□□□□ -0.23
VPS54-203ENST00000409558 DCLK1O15075 740 aa13.63□□□□□ -0.23
VPS54-203ENST00000409558 PIGNO95427 931 aa13.63□□□□□ -0.23
VPS54-203ENST00000409558 JUNP05412 331 aaKnown RBP13.63□□□□□ -0.23
VPS54-203ENST00000409558 GNAT1P11488 350 aa13.63□□□□□ -0.23
VPS54-203ENST00000409558 SLC18A1P54219 525 aa13.63□□□□□ -0.23
VPS54-203ENST00000409558 TEX44Q53QW1 395 aa13.63□□□□□ -0.23
VPS54-203ENST00000409558 CST9Q5W186 159 aa13.63□□□□□ -0.23
VPS54-203ENST00000409558 IZUMO2Q6UXV1 221 aa13.63□□□□□ -0.23
VPS54-203ENST00000409558 LRRC74BQ6ZQY2 392 aa13.63□□□□□ -0.23
VPS54-203ENST00000409558 ANKRD23Q86SG2 305 aa13.63□□□□□ -0.23
VPS54-203ENST00000409558 ZNF280BQ86YH2 543 aa13.63□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms