RNA–Protein interactions for RNA: ENST00000409531.5

TSPAN4-208, Transcript of tetraspanin 4, humanhuman

TSL 5 BASIC

Gene TSPAN4, Length 1,339 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN4-208ENST00000409531 LRRC49Q8IUZ0 686 aa16.92■□□□□ 0.3
TSPAN4-208ENST00000409531 CCDC26Q8TAB7 109 aa16.92■□□□□ 0.3
TSPAN4-208ENST00000409531 PNKPQ96T60 521 aa16.92■□□□□ 0.3
TSPAN4-208ENST00000409531 DNAJC17Q9NVM6 304 aaKnown RBP16.92■□□□□ 0.3
TSPAN4-208ENST00000409531 DEC1Q9P2X7 70 aa16.92■□□□□ 0.3
TSPAN4-208ENST00000409531 FBXO10Q9UK96 956 aa16.92■□□□□ 0.3
TSPAN4-208ENST00000409531 SHROOM3Q8TF72 1996 aa16.92■□□□□ 0.3
TSPAN4-208ENST00000409531 A0A0A0MRY4 1105 aa16.91■□□□□ 0.3
TSPAN4-208ENST00000409531 ARHGAP42A6NI28 874 aa16.91■□□□□ 0.3
TSPAN4-208ENST00000409531 ATG13O75143 517 aa16.91■□□□□ 0.3
TSPAN4-208ENST00000409531 GNA12Q03113 381 aa16.91■□□□□ 0.3
TSPAN4-208ENST00000409531 CSTF1Q05048 431 aaKnown RBP16.91■□□□□ 0.3
TSPAN4-208ENST00000409531 DMC1Q14565 340 aa16.91■□□□□ 0.3
TSPAN4-208ENST00000409531 POLD3Q15054 466 aaPredicted RBP16.91■□□□□ 0.3
TSPAN4-208ENST00000409531 CXorf57Q6NSI4 855 aaKnown RBP16.91■□□□□ 0.3
TSPAN4-208ENST00000409531 NUDT18Q6ZVK8 323 aa16.91■□□□□ 0.3
TSPAN4-208ENST00000409531 ETFBKMTQ8IXQ9 262 aa16.91■□□□□ 0.3
TSPAN4-208ENST00000409531 NAT16Q8N8M0 369 aa16.91■□□□□ 0.3
TSPAN4-208ENST00000409531 EZH1Q92800 747 aaPredicted RBP16.91■□□□□ 0.3
TSPAN4-208ENST00000409531 FRMD8P1Q9BZ68 369 aaPredicted RBP16.91■□□□□ 0.3
TSPAN4-208ENST00000409531 MUC3BQ9H195 1237 aa16.91■□□□□ 0.3
TSPAN4-208ENST00000409531 PRMT8Q9NR22 394 aaPredicted RBP16.91■□□□□ 0.3
TSPAN4-208ENST00000409531 HOMER3Q9NSC5 361 aa16.91■□□□□ 0.3
TSPAN4-208ENST00000409531 NDFIP2Q9NV92 336 aa16.91■□□□□ 0.3
TSPAN4-208ENST00000409531 FAM86C1Q9NVL1 165 aa16.91■□□□□ 0.3
TSPAN4-208ENST00000409531 SLC27A6Q9Y2P4 619 aa16.91■□□□□ 0.3
TSPAN4-208ENST00000409531 HEY1Q9Y5J3 304 aa16.91■□□□□ 0.3
TSPAN4-208ENST00000409531 GOLGA6L10A0A0M3HER8 536 aa16.9■□□□□ 0.3
TSPAN4-208ENST00000409531 ZNF185O15231 689 aa16.9■□□□□ 0.3
TSPAN4-208ENST00000409531 MFSD11O43934 449 aa16.9■□□□□ 0.3
TSPAN4-208ENST00000409531 RNF40O75150 1001 aa16.9■□□□□ 0.3
TSPAN4-208ENST00000409531 TULP3O75386 442 aa16.9■□□□□ 0.3
TSPAN4-208ENST00000409531 ADCY2Q08462 1091 aa16.9■□□□□ 0.3
TSPAN4-208ENST00000409531 PDK1Q15118 436 aa16.9■□□□□ 0.3
TSPAN4-208ENST00000409531 RNF219Q5W0B1 726 aaPredicted RBP16.9■□□□□ 0.3
TSPAN4-208ENST00000409531 AFMIDQ63HM1 303 aa16.9■□□□□ 0.3
TSPAN4-208ENST00000409531 GRAMD4Q6IC98 578 aa16.9■□□□□ 0.3
TSPAN4-208ENST00000409531 C12orf40Q86WS4 652 aa16.9■□□□□ 0.3
TSPAN4-208ENST00000409531 NPWQ8N729 165 aa16.9■□□□□ 0.3
TSPAN4-208ENST00000409531 DDX51Q8N8A6 666 aaKnown RBP eCLIP16.9■□□□□ 0.3
TSPAN4-208ENST00000409531 WFDC5Q8TCV5 224 aa16.9■□□□□ 0.3
TSPAN4-208ENST00000409531 WFIKKN2Q8TEU8 576 aa16.9■□□□□ 0.3
TSPAN4-208ENST00000409531 P2RY11Q96G91 374 aa16.9■□□□□ 0.3
TSPAN4-208ENST00000409531 CAPZA3Q96KX2 299 aa16.9■□□□□ 0.3
TSPAN4-208ENST00000409531 HERPUD2Q9BSE4 406 aa16.9■□□□□ 0.3
TSPAN4-208ENST00000409531 KLC2Q9H0B6 622 aa16.9■□□□□ 0.3
TSPAN4-208ENST00000409531 BRD8Q9H0E9 1235 aa16.9■□□□□ 0.3
TSPAN4-208ENST00000409531 LRRC19Q9H756 370 aa16.9■□□□□ 0.3
TSPAN4-208ENST00000409531 DTLQ9NZJ0 730 aa16.9■□□□□ 0.3
TSPAN4-208ENST00000409531 GGA2Q9UJY4 613 aa16.9■□□□□ 0.3
TSPAN4-208ENST00000409531 HPCAL4Q9UM19 191 aa16.9■□□□□ 0.3
TSPAN4-208ENST00000409531 NYNRINQ9P2P1 1898 aaKnown RBP16.9■□□□□ 0.3
TSPAN4-208ENST00000409531 CHURC1-FNTBB4DL54 471 aa16.89■□□□□ 0.29
TSPAN4-208ENST00000409531 RASA4BC9J798 803 aa16.89■□□□□ 0.29
TSPAN4-208ENST00000409531 K7EQS6 105 aa16.89■□□□□ 0.29
TSPAN4-208ENST00000409531 PPP1R12AO14974 1030 aaPredicted RBP16.89■□□□□ 0.29
TSPAN4-208ENST00000409531 RASA4O43374 803 aa16.89■□□□□ 0.29
TSPAN4-208ENST00000409531 ZNF189O75820 626 aaPredicted RBP16.89■□□□□ 0.29
TSPAN4-208ENST00000409531 KAT7O95251 611 aa16.89■□□□□ 0.29
TSPAN4-208ENST00000409531 APODP05090 189 aa16.89■□□□□ 0.29
TSPAN4-208ENST00000409531 PABPC1P11940 636 aaKnown RBP16.89■□□□□ 0.29
TSPAN4-208ENST00000409531 HLA-FP30511 346 aa16.89■□□□□ 0.29
TSPAN4-208ENST00000409531 NBL1P41271 181 aa16.89■□□□□ 0.29
TSPAN4-208ENST00000409531 GRIA2P42262 883 aa16.89■□□□□ 0.29
TSPAN4-208ENST00000409531 PLK1P53350 603 aa16.89■□□□□ 0.29
TSPAN4-208ENST00000409531 SATB1Q01826 763 aa16.89■□□□□ 0.29
TSPAN4-208ENST00000409531 GBE1Q04446 702 aa16.89■□□□□ 0.29
TSPAN4-208ENST00000409531 GALNT2Q10471 571 aa16.89■□□□□ 0.29
TSPAN4-208ENST00000409531 LMAN2Q12907 356 aa16.89■□□□□ 0.29
TSPAN4-208ENST00000409531 FSCBQ5H9T9 825 aa16.89■□□□□ 0.29
TSPAN4-208ENST00000409531 IL31Q6EBC2 164 aa16.89■□□□□ 0.29
TSPAN4-208ENST00000409531 TSSK4Q6SA08 328 aa16.89■□□□□ 0.29
TSPAN4-208ENST00000409531 ZNF354CQ86Y25 554 aa16.89■□□□□ 0.29
TSPAN4-208ENST00000409531 CREG2Q8IUH2 290 aa16.89■□□□□ 0.29
TSPAN4-208ENST00000409531 ARHGAP12Q8IWW6 846 aa16.89■□□□□ 0.29
TSPAN4-208ENST00000409531 AHI1Q8N157 1196 aa16.89■□□□□ 0.29
TSPAN4-208ENST00000409531 CELF6Q96J87 481 aaKnown RBP16.89■□□□□ 0.29
TSPAN4-208ENST00000409531 MS4A14Q96JA4 679 aa16.89■□□□□ 0.29
TSPAN4-208ENST00000409531 FEM1AQ9BSK4 669 aa16.89■□□□□ 0.29
TSPAN4-208ENST00000409531 C2orf49Q9BVC5 232 aaPredicted RBP16.89■□□□□ 0.29
TSPAN4-208ENST00000409531 FAM126AQ9BYI3 521 aaPredicted RBP16.89■□□□□ 0.29
TSPAN4-208ENST00000409531 SLC39A8Q9C0K1 460 aa16.89■□□□□ 0.29
TSPAN4-208ENST00000409531 NOL6Q9H6R4 1146 aaKnown RBP16.89■□□□□ 0.29
TSPAN4-208ENST00000409531 ABCB8Q9NUT2 735 aa16.89■□□□□ 0.29
TSPAN4-208ENST00000409531 CDC23Q9UJX2 597 aa16.89■□□□□ 0.29
TSPAN4-208ENST00000409531 VPS28Q9UK41 221 aa16.89■□□□□ 0.29
TSPAN4-208ENST00000409531 CLEC4EQ9ULY5 219 aa16.89■□□□□ 0.29
TSPAN4-208ENST00000409531 MFHAS1Q9Y4C4 1052 aa16.89■□□□□ 0.29
TSPAN4-208ENST00000409531 PROB1E7EW31 1015 aa16.88■□□□□ 0.29
TSPAN4-208ENST00000409531 DFFAO00273 331 aa16.88■□□□□ 0.29
TSPAN4-208ENST00000409531 MCF2LO15068 1137 aa16.88■□□□□ 0.29
TSPAN4-208ENST00000409531 PAPSS2O95340 614 aaPredicted RBP16.88■□□□□ 0.29
TSPAN4-208ENST00000409531 CSKP41240 450 aa16.88■□□□□ 0.29
TSPAN4-208ENST00000409531 GARSP41250 739 aaKnown RBP16.88■□□□□ 0.29
TSPAN4-208ENST00000409531 TNFRSF4P43489 277 aa16.88■□□□□ 0.29
TSPAN4-208ENST00000409531 NRLP54845 237 aa16.88■□□□□ 0.29
TSPAN4-208ENST00000409531 OTUD4Q01804 1114 aaKnown RBP16.88■□□□□ 0.29
TSPAN4-208ENST00000409531 ZNF33AQ06730 810 aa16.88■□□□□ 0.29
TSPAN4-208ENST00000409531 CKAP4Q07065 602 aaKnown RBP16.88■□□□□ 0.29
TSPAN4-208ENST00000409531 XRCC4Q13426 336 aa16.88■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms