RNA–Protein interactions for RNA: ENST00000409251.7

PTPRN-202, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

TSL 1 (best) BASIC

Gene PTPRN, Length 3,622 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-202ENST00000409251 DDHD1Q8NEL9 900 aa13.21□□□□□ -0.29
PTPRN-202ENST00000409251 RMND5BQ96G75 393 aaPredicted RBP13.21□□□□□ -0.29
PTPRN-202ENST00000409251 ABHD16BQ9H3Z7 469 aa13.21□□□□□ -0.29
PTPRN-202ENST00000409251 SOX17Q9H6I2 414 aaPredicted RBP13.21□□□□□ -0.29
PTPRN-202ENST00000409251 COQ10BQ9H8M1 238 aa13.21□□□□□ -0.29
PTPRN-202ENST00000409251 GTSE1Q9NYZ3 720 aa13.21□□□□□ -0.29
PTPRN-202ENST00000409251 PDLIM1O00151 329 aa13.21□□□□□ -0.29
PTPRN-202ENST00000409251 NDUFB5O43674 189 aa13.21□□□□□ -0.29
PTPRN-202ENST00000409251 LRCH4O75427 683 aa13.21□□□□□ -0.29
PTPRN-202ENST00000409251 KCNH1O95259 989 aa13.21□□□□□ -0.29
PTPRN-202ENST00000409251 CHRNGP07510 517 aa13.21□□□□□ -0.29
PTPRN-202ENST00000409251 CDH2P19022 906 aaPredicted RBP13.21□□□□□ -0.29
PTPRN-202ENST00000409251 UGT1A6P19224 532 aa13.21□□□□□ -0.29
PTPRN-202ENST00000409251 MAGP20916 626 aa13.21□□□□□ -0.29
PTPRN-202ENST00000409251 ACO1P21399 889 aaKnown RBP13.21□□□□□ -0.29
PTPRN-202ENST00000409251 KDELR1P24390 212 aa13.21□□□□□ -0.29
PTPRN-202ENST00000409251 ADORA2BP29275 332 aa13.21□□□□□ -0.29
PTPRN-202ENST00000409251 CPOXP36551 454 aa13.21□□□□□ -0.29
PTPRN-202ENST00000409251 C21orf59P57076 290 aa13.21□□□□□ -0.29
PTPRN-202ENST00000409251 IFRD2Q12894 506 aaPredicted RBP13.21□□□□□ -0.29
PTPRN-202ENST00000409251 CHSY1Q86X52 802 aa13.21□□□□□ -0.29
PTPRN-202ENST00000409251 HPDLQ96IR7 371 aa13.21□□□□□ -0.29
PTPRN-202ENST00000409251 ZFP42Q96MM3 310 aa13.21□□□□□ -0.29
PTPRN-202ENST00000409251 NIF3L1Q9GZT8 377 aa13.21□□□□□ -0.29
PTPRN-202ENST00000409251 SDCBP2Q9H190 292 aa13.21□□□□□ -0.29
PTPRN-202ENST00000409251 PDZD7Q9H5P4 517 aa13.21□□□□□ -0.29
PTPRN-202ENST00000409251 TCF7L2Q9NQB0 619 aa13.21□□□□□ -0.29
PTPRN-202ENST00000409251 PSMD13Q9UNM6 376 aa13.21□□□□□ -0.29
PTPRN-202ENST00000409251 TIPRLO75663 272 aa13.21□□□□□ -0.3
PTPRN-202ENST00000409251 APOEP02649 317 aa13.21□□□□□ -0.3
PTPRN-202ENST00000409251 HMGCRP04035 888 aa13.21□□□□□ -0.3
PTPRN-202ENST00000409251 SMIM10L2AP0DMW4 78 aa13.21□□□□□ -0.3
PTPRN-202ENST00000409251 SMIM10L2BP0DMW5 78 aa13.21□□□□□ -0.3
PTPRN-202ENST00000409251 MAP4P27816 1152 aaKnown RBP13.21□□□□□ -0.3
PTPRN-202ENST00000409251 GCNT1Q02742 428 aa13.21□□□□□ -0.3
PTPRN-202ENST00000409251 KLF10Q13118 480 aa13.21□□□□□ -0.3
PTPRN-202ENST00000409251 CRHR2Q13324 411 aa13.21□□□□□ -0.3
PTPRN-202ENST00000409251 KDELC2Q7Z4H8 507 aa13.21□□□□□ -0.3
PTPRN-202ENST00000409251 DNAAF3Q8N9W5 541 aa13.21□□□□□ -0.3
PTPRN-202ENST00000409251 NDRG1Q92597 394 aaKnown RBP13.21□□□□□ -0.3
PTPRN-202ENST00000409251 LPPQ93052 612 aa13.21□□□□□ -0.3
PTPRN-202ENST00000409251 MRPS26Q9BYN8 205 aaKnown RBP13.21□□□□□ -0.3
PTPRN-202ENST00000409251 NDEL1Q9GZM8 345 aa13.21□□□□□ -0.3
PTPRN-202ENST00000409251 TMEM216Q9P0N5 145 aa13.21□□□□□ -0.3
PTPRN-202ENST00000409251 SDR42E2A6NKP2 422 aa13.2□□□□□ -0.3
PTPRN-202ENST00000409251 ACAT1P24752 427 aaKnown RBP13.2□□□□□ -0.3
PTPRN-202ENST00000409251 VARSP26640 1264 aaKnown RBP13.2□□□□□ -0.3
PTPRN-202ENST00000409251 AFF1P51825 1210 aaKnown RBP13.2□□□□□ -0.3
PTPRN-202ENST00000409251 MS4A2Q01362 244 aa13.2□□□□□ -0.3
PTPRN-202ENST00000409251 FSCBQ5H9T9 825 aa13.2□□□□□ -0.3
PTPRN-202ENST00000409251 ZNF618Q5T7W0 954 aa13.2□□□□□ -0.3
PTPRN-202ENST00000409251 IL23RQ5VWK5 629 aa13.2□□□□□ -0.3
PTPRN-202ENST00000409251 AAGABQ6PD74 315 aa13.2□□□□□ -0.3
PTPRN-202ENST00000409251 POTEHQ6S545 545 aa13.2□□□□□ -0.3
PTPRN-202ENST00000409251 ZNF410Q86VK4 478 aa13.2□□□□□ -0.3
PTPRN-202ENST00000409251 JADE3Q92613 823 aa13.2□□□□□ -0.3
PTPRN-202ENST00000409251 SLC39A3Q9BRY0 314 aa13.2□□□□□ -0.3
PTPRN-202ENST00000409251 MAGEB5Q9BZ81 275 aa13.2□□□□□ -0.3
PTPRN-202ENST00000409251 KLHL25Q9H0H3 589 aa13.2□□□□□ -0.3
PTPRN-202ENST00000409251 SIX4Q9UIU6 781 aa13.2□□□□□ -0.3
PTPRN-202ENST00000409251 PSAT1Q9Y617 370 aa13.2□□□□□ -0.3
PTPRN-202ENST00000409251 ADGRA2Q96PE1 1338 aa13.2□□□□□ -0.3
PTPRN-202ENST00000409251 RFPL1O75677 317 aa13.2□□□□□ -0.3
PTPRN-202ENST00000409251 ASS1P00966 412 aaKnown RBP13.2□□□□□ -0.3
PTPRN-202ENST00000409251 CALB1P05937 261 aa13.2□□□□□ -0.3
PTPRN-202ENST00000409251 PDGFRAP16234 1089 aa13.2□□□□□ -0.3
PTPRN-202ENST00000409251 MPSTP25325 297 aa13.2□□□□□ -0.3
PTPRN-202ENST00000409251 TMEM132DQ14C87 1099 aa13.2□□□□□ -0.3
PTPRN-202ENST00000409251 PLCL1Q15111 1095 aa13.2□□□□□ -0.3
PTPRN-202ENST00000409251 DUSP28Q4G0W2 176 aa13.2□□□□□ -0.3
PTPRN-202ENST00000409251 TRIM72Q6ZMU5 477 aa13.2□□□□□ -0.3
PTPRN-202ENST00000409251 ZBTB49Q6ZSB9 765 aa13.2□□□□□ -0.3
PTPRN-202ENST00000409251 DSELQ8IZU8 1212 aa13.2□□□□□ -0.3
PTPRN-202ENST00000409251 SMYD1Q8NB12 490 aa13.2□□□□□ -0.3
PTPRN-202ENST00000409251 KYQ8NBH2 561 aa13.2□□□□□ -0.3
PTPRN-202ENST00000409251 ZFRQ96KR1 1074 aaKnown RBP13.2□□□□□ -0.3
PTPRN-202ENST00000409251 RPL10LQ96L21 214 aaKnown RBP13.2□□□□□ -0.3
PTPRN-202ENST00000409251 C7orf26Q96N11 449 aa13.2□□□□□ -0.3
PTPRN-202ENST00000409251 FERMT1Q9BQL6 677 aa13.2□□□□□ -0.3
PTPRN-202ENST00000409251 AP5M1Q9H0R1 490 aa13.2□□□□□ -0.3
PTPRN-202ENST00000409251 AP4E1Q9UPM8 1137 aa13.2□□□□□ -0.3
PTPRN-202ENST00000409251 DGKBQ9Y6T7 804 aa13.2□□□□□ -0.3
PTPRN-202ENST00000409251 ZNF839A8K0R7 811 aa13.2□□□□□ -0.3
PTPRN-202ENST00000409251 PSMD12O00232 456 aaPredicted RBP13.2□□□□□ -0.3
PTPRN-202ENST00000409251 KRT7P08729 469 aa13.2□□□□□ -0.3
PTPRN-202ENST00000409251 PTK2BQ14289 1009 aa13.2□□□□□ -0.3
PTPRN-202ENST00000409251 TMEM53Q6P2H8 277 aa13.2□□□□□ -0.3
PTPRN-202ENST00000409251 ZPBP2Q6X784 338 aa13.2□□□□□ -0.3
PTPRN-202ENST00000409251 ADGRF2Q8IZF7 708 aa13.2□□□□□ -0.3
PTPRN-202ENST00000409251 TDRD5Q8NAT2 981 aaKnown RBP13.2□□□□□ -0.3
PTPRN-202ENST00000409251 PPTC7Q8NI37 304 aa13.2□□□□□ -0.3
PTPRN-202ENST00000409251 FNDC8Q8TC99 324 aa13.2□□□□□ -0.3
PTPRN-202ENST00000409251 PDCD6IPQ8WUM4 868 aaKnown RBP13.2□□□□□ -0.3
PTPRN-202ENST00000409251 TRIM8Q9BZR9 551 aa13.2□□□□□ -0.3
PTPRN-202ENST00000409251 C2orf40Q9H1Z8 148 aa13.2□□□□□ -0.3
PTPRN-202ENST00000409251 TMEM134Q9H6X4 195 aa13.2□□□□□ -0.3
PTPRN-202ENST00000409251 NRDE2Q9H7Z3 1164 aa13.2□□□□□ -0.3
PTPRN-202ENST00000409251 USP18Q9UMW8 372 aa13.2□□□□□ -0.3
PTPRN-202ENST00000409251 GABRQQ9UN88 632 aa13.2□□□□□ -0.3
PTPRN-202ENST00000409251 COQ6Q9Y2Z9 468 aa13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms