RNA–Protein interactions for RNA: ENST00000409225.2

CHMP3-203, Transcript of charged multivesicular body protein 3, humanhuman

TSL 2 BASIC

Gene CHMP3, Length 1,099 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-203ENST00000409225 AKT2P31751 481 aa17.16■□□□□ 0.34
CHMP3-203ENST00000409225 SKOR1P84550 965 aa17.16■□□□□ 0.34
CHMP3-203ENST00000409225 NNTQ13423 1086 aa17.16■□□□□ 0.34
CHMP3-203ENST00000409225 CDKN3Q16667 212 aa17.16■□□□□ 0.34
CHMP3-203ENST00000409225 Q6ZVU0 165 aa17.16■□□□□ 0.34
CHMP3-203ENST00000409225 TAC4Q86UU9 113 aa17.16■□□□□ 0.34
CHMP3-203ENST00000409225 SLC22A18ASQ8N1D0 253 aa17.16■□□□□ 0.34
CHMP3-203ENST00000409225 ARRDC3Q96B67 414 aa17.16■□□□□ 0.34
CHMP3-203ENST00000409225 PRR11Q96HE9 360 aaPredicted RBP17.16■□□□□ 0.34
CHMP3-203ENST00000409225 DUSP23Q9BVJ7 150 aa17.16■□□□□ 0.34
CHMP3-203ENST00000409225 ENTPD2Q9Y5L3 495 aa17.16■□□□□ 0.34
CHMP3-203ENST00000409225 LZTS3O60299 673 aaPredicted RBP17.15■□□□□ 0.34
CHMP3-203ENST00000409225 FBXO21O94952 628 aa17.15■□□□□ 0.34
CHMP3-203ENST00000409225 NFKB2Q00653 900 aa17.15■□□□□ 0.34
CHMP3-203ENST00000409225 LRMPQ12912 555 aa17.15■□□□□ 0.34
CHMP3-203ENST00000409225 CLN3Q13286 438 aa17.15■□□□□ 0.34
CHMP3-203ENST00000409225 SLC12A1Q13621 1099 aa17.15■□□□□ 0.34
CHMP3-203ENST00000409225 CBWD6Q4V339 395 aa17.15■□□□□ 0.34
CHMP3-203ENST00000409225 ZC3H12AQ5D1E8 599 aaKnown RBP17.15■□□□□ 0.34
CHMP3-203ENST00000409225 CBWD3Q5JTY5 395 aa17.15■□□□□ 0.34
CHMP3-203ENST00000409225 CBWD5Q5RIA9 395 aa17.15■□□□□ 0.34
CHMP3-203ENST00000409225 PIP5KL1Q5T9C9 394 aa17.15■□□□□ 0.34
CHMP3-203ENST00000409225 TCERG1LQ5VWI1 586 aa17.15■□□□□ 0.34
CHMP3-203ENST00000409225 GUSBP11Q6P575 273 aa17.15■□□□□ 0.34
CHMP3-203ENST00000409225 CRTC1Q6UUV9 634 aa17.15■□□□□ 0.34
CHMP3-203ENST00000409225 EFL1Q7Z2Z2 1120 aaKnown RBP17.15■□□□□ 0.34
CHMP3-203ENST00000409225 CCAR2Q8N163 923 aaKnown RBP17.15■□□□□ 0.34
CHMP3-203ENST00000409225 UBR7Q8N806 425 aa17.15■□□□□ 0.34
CHMP3-203ENST00000409225 FAM149B1Q96BN6 582 aa17.15■□□□□ 0.34
CHMP3-203ENST00000409225 EIF2AK3Q9NZJ5 1116 aaKnown RBP17.15■□□□□ 0.34
CHMP3-203ENST00000409225 SLC25A13Q9UJS0 675 aa17.15■□□□□ 0.34
CHMP3-203ENST00000409225 KIAA1257Q9ULG3 409 aa17.15■□□□□ 0.34
CHMP3-203ENST00000409225 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP17.14■□□□□ 0.33
CHMP3-203ENST00000409225 CDRT15L2A8MXV6 281 aa17.14■□□□□ 0.33
CHMP3-203ENST00000409225 F5H5T6 163 aa17.14■□□□□ 0.33
CHMP3-203ENST00000409225 MCF2LO15068 1137 aa17.14■□□□□ 0.33
CHMP3-203ENST00000409225 CALCAP01258 141 aa17.14■□□□□ 0.33
CHMP3-203ENST00000409225 PRR29P0C7W0 189 aa17.14■□□□□ 0.33
CHMP3-203ENST00000409225 HNRNPA2B1P22626 353 aaKnown RBP17.14■□□□□ 0.33
CHMP3-203ENST00000409225 MCCD1P59942 119 aaPredicted RBP17.14■□□□□ 0.33
CHMP3-203ENST00000409225 HNRNPKP61978 463 aaKnown RBP eCLIP17.14■□□□□ 0.33
CHMP3-203ENST00000409225 ZNF177Q13360 481 aaPredicted RBP17.14■□□□□ 0.33
CHMP3-203ENST00000409225 DLG2Q15700 870 aa17.14■□□□□ 0.33
CHMP3-203ENST00000409225 ZNF284Q2VY69 593 aa17.14■□□□□ 0.33
CHMP3-203ENST00000409225 ARL13BQ3SXY8 428 aa17.14■□□□□ 0.33
CHMP3-203ENST00000409225 DCAF17Q5H9S7 520 aaPredicted RBP17.14■□□□□ 0.33
CHMP3-203ENST00000409225 COLEC12Q5KU26 742 aa17.14■□□□□ 0.33
CHMP3-203ENST00000409225 OR6B2Q6IFH4 312 aa17.14■□□□□ 0.33
CHMP3-203ENST00000409225 TMEM270Q6UE05 265 aa17.14■□□□□ 0.33
CHMP3-203ENST00000409225 GCNT7Q6ZNI0 430 aa17.14■□□□□ 0.33
CHMP3-203ENST00000409225 RBM44Q6ZP01 1051 aaKnown RBP17.14■□□□□ 0.33
CHMP3-203ENST00000409225 PTAR1Q7Z6K3 402 aaPredicted RBP17.14■□□□□ 0.33
CHMP3-203ENST00000409225 HORMAD1Q86X24 394 aa17.14■□□□□ 0.33
CHMP3-203ENST00000409225 ERCC4Q92889 916 aaPredicted RBP17.14■□□□□ 0.33
CHMP3-203ENST00000409225 CCDC47Q96A33 483 aaKnown RBP17.14■□□□□ 0.33
CHMP3-203ENST00000409225 PCDHGA8Q9Y5G5 932 aa17.14■□□□□ 0.33
CHMP3-203ENST00000409225 COL27A1Q8IZC6 1860 aaPredicted RBP17.14■□□□□ 0.33
CHMP3-203ENST00000409225 TERTO14746 1132 aaKnown RBP17.13■□□□□ 0.33
CHMP3-203ENST00000409225 ALOX15BO15296 676 aa17.13■□□□□ 0.33
CHMP3-203ENST00000409225 ATP9BO43861 1147 aa17.13■□□□□ 0.33
CHMP3-203ENST00000409225 RHOBTB3O94955 611 aa17.13■□□□□ 0.33
CHMP3-203ENST00000409225 TNFSF15O95150 251 aa17.13■□□□□ 0.33
CHMP3-203ENST00000409225 MYL1P05976 194 aa17.13■□□□□ 0.33
CHMP3-203ENST00000409225 EPB41P11171 864 aaKnown RBP17.13■□□□□ 0.33
CHMP3-203ENST00000409225 BRD2P25440 801 aaKnown RBP17.13■□□□□ 0.33
CHMP3-203ENST00000409225 PLK1P53350 603 aa17.13■□□□□ 0.33
CHMP3-203ENST00000409225 ZCWPW2Q504Y3 356 aa17.13■□□□□ 0.33
CHMP3-203ENST00000409225 SYPL2Q5VXT5 272 aa17.13■□□□□ 0.33
CHMP3-203ENST00000409225 CXorf57Q6NSI4 855 aaKnown RBP17.13■□□□□ 0.33
CHMP3-203ENST00000409225 ZCCHC8Q6NZY4 707 aaKnown RBP17.13■□□□□ 0.33
CHMP3-203ENST00000409225 Q6ZSR6 202 aa17.13■□□□□ 0.33
CHMP3-203ENST00000409225 GUF1Q8N442 669 aaKnown RBP17.13■□□□□ 0.33
CHMP3-203ENST00000409225 ARL14Q8N4G2 192 aa17.13■□□□□ 0.33
CHMP3-203ENST00000409225 ZNF548Q8NEK5 533 aaPredicted RBP17.13■□□□□ 0.33
CHMP3-203ENST00000409225 GRAMD1AQ96CP6 724 aa17.13■□□□□ 0.33
CHMP3-203ENST00000409225 IFT43Q96FT9 208 aa17.13■□□□□ 0.33
CHMP3-203ENST00000409225 BTN2A3PQ96KV6 586 aa17.13■□□□□ 0.33
CHMP3-203ENST00000409225 HSFY1Q96LI6 401 aa17.13■□□□□ 0.33
CHMP3-203ENST00000409225 CCNL2Q96S94 520 aaPredicted RBP17.13■□□□□ 0.33
CHMP3-203ENST00000409225 ZSWIM1Q9BR11 485 aa17.13■□□□□ 0.33
CHMP3-203ENST00000409225 A0A1B0GVL5 298 aa17.12■□□□□ 0.33
CHMP3-203ENST00000409225 A6NNZ2 444 aa17.12■□□□□ 0.33
CHMP3-203ENST00000409225 KPNA3O00505 521 aaPredicted RBP17.12■□□□□ 0.33
CHMP3-203ENST00000409225 PCDH8O95206 1070 aa17.12■□□□□ 0.33
CHMP3-203ENST00000409225 CTSLP07711 333 aa17.12■□□□□ 0.33
CHMP3-203ENST00000409225 PAEPP09466 180 aa17.12■□□□□ 0.33
CHMP3-203ENST00000409225 PFKFB1P16118 471 aa17.12■□□□□ 0.33
CHMP3-203ENST00000409225 DRAP1Q14919 205 aaPredicted RBP17.12■□□□□ 0.33
CHMP3-203ENST00000409225 CNGA2Q16280 664 aa17.12■□□□□ 0.33
CHMP3-203ENST00000409225 LINC00303Q3SY05 128 aa17.12■□□□□ 0.33
CHMP3-203ENST00000409225 SEL1L3Q68CR1 1132 aa17.12■□□□□ 0.33
CHMP3-203ENST00000409225 NEK5Q6P3R8 708 aa17.12■□□□□ 0.33
CHMP3-203ENST00000409225 ABI3BPQ7Z7G0 1075 aa17.12■□□□□ 0.33
CHMP3-203ENST00000409225 CLEC14AQ86T13 490 aa17.12■□□□□ 0.33
CHMP3-203ENST00000409225 WDR36Q8NI36 951 aaKnown RBP17.12■□□□□ 0.33
CHMP3-203ENST00000409225 ZFR2Q9UPR6 939 aaKnown RBP17.12■□□□□ 0.33
CHMP3-203ENST00000409225 PCDHB4Q9Y5E5 795 aa17.12■□□□□ 0.33
CHMP3-203ENST00000409225 KIF26BQ2KJY2 2108 aa17.11■□□□□ 0.33
CHMP3-203ENST00000409225 TCAF2A6NFQ2 919 aa17.11■□□□□ 0.33
CHMP3-203ENST00000409225 EFSO43281 561 aa17.11■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms