RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 SOX9P48436 509 aa18.46■□□□□ 0.55
SDC1-203ENST00000403076 PFKPQ01813 784 aa18.46■□□□□ 0.55
SDC1-203ENST00000403076 KDSRQ06136 332 aa18.46■□□□□ 0.55
SDC1-203ENST00000403076 IL10RBQ08334 325 aa18.46■□□□□ 0.55
SDC1-203ENST00000403076 DMC1Q14565 340 aa18.46■□□□□ 0.55
SDC1-203ENST00000403076 PRKD1Q15139 912 aaPredicted RBP18.46■□□□□ 0.55
SDC1-203ENST00000403076 GAB4Q2WGN9 574 aa18.46■□□□□ 0.55
SDC1-203ENST00000403076 PITRM1Q5JRX3 1037 aa18.46■□□□□ 0.55
SDC1-203ENST00000403076 ETFBKMTQ8IXQ9 262 aa18.46■□□□□ 0.55
SDC1-203ENST00000403076 CCDC26Q8TAB7 109 aa18.46■□□□□ 0.55
SDC1-203ENST00000403076 HTR3CQ8WXA8 447 aa18.46■□□□□ 0.55
SDC1-203ENST00000403076 DNASE1L2Q92874 299 aa18.46■□□□□ 0.55
SDC1-203ENST00000403076 ALG14Q96F25 216 aa18.46■□□□□ 0.55
SDC1-203ENST00000403076 TRPV5Q9NQA5 729 aa18.46■□□□□ 0.55
SDC1-203ENST00000403076 AMACRQ9UHK6 382 aa18.46■□□□□ 0.55
SDC1-203ENST00000403076 MYO10Q9HD67 2058 aa18.45■□□□□ 0.54
SDC1-203ENST00000403076 PALM2-AKAP2B1ALY0 433 aaPredicted RBP18.45■□□□□ 0.54
SDC1-203ENST00000403076 KCNK1O00180 336 aa18.45■□□□□ 0.54
SDC1-203ENST00000403076 RIOK3O14730 519 aaKnown RBP18.45■□□□□ 0.54
SDC1-203ENST00000403076 MTSS1O43312 755 aa18.45■□□□□ 0.54
SDC1-203ENST00000403076 NARSO43776 548 aaKnown RBP18.45■□□□□ 0.54
SDC1-203ENST00000403076 SNAP91O60641 907 aa18.45■□□□□ 0.54
SDC1-203ENST00000403076 PRAMEF11O60813 436 aa18.45■□□□□ 0.54
SDC1-203ENST00000403076 ZNF189O75820 626 aaPredicted RBP18.45■□□□□ 0.54
SDC1-203ENST00000403076 STK10O94804 968 aaKnown RBP18.45■□□□□ 0.54
SDC1-203ENST00000403076 ECEL1O95672 775 aa18.45■□□□□ 0.54
SDC1-203ENST00000403076 GAS8O95995 478 aa18.45■□□□□ 0.54
SDC1-203ENST00000403076 CISD3P0C7P0 127 aa18.45■□□□□ 0.54
SDC1-203ENST00000403076 POLR2EP19388 210 aaKnown RBP18.45■□□□□ 0.54
SDC1-203ENST00000403076 GLDCP23378 1020 aa18.45■□□□□ 0.54
SDC1-203ENST00000403076 STIP1P31948 543 aaKnown RBP18.45■□□□□ 0.54
SDC1-203ENST00000403076 PLK1P53350 603 aa18.45■□□□□ 0.54
SDC1-203ENST00000403076 ZNF33AQ06730 810 aa18.45■□□□□ 0.54
SDC1-203ENST00000403076 PREPLQ4J6C6 727 aaPredicted RBP18.45■□□□□ 0.54
SDC1-203ENST00000403076 LEKR1Q6ZMV7 388 aa18.45■□□□□ 0.54
SDC1-203ENST00000403076 AHI1Q8N157 1196 aa18.45■□□□□ 0.54
SDC1-203ENST00000403076 CCDC89Q8N998 374 aa18.45■□□□□ 0.54
SDC1-203ENST00000403076 FAM71DQ8N9W8 422 aa18.45■□□□□ 0.54
SDC1-203ENST00000403076 DCAF4L2Q8NA75 395 aa18.45■□□□□ 0.54
SDC1-203ENST00000403076 WFIKKN2Q8TEU8 576 aa18.45■□□□□ 0.54
SDC1-203ENST00000403076 LMLNQ96KR4 655 aa18.45■□□□□ 0.54
SDC1-203ENST00000403076 PNKPQ96T60 521 aa18.45■□□□□ 0.54
SDC1-203ENST00000403076 ACE2Q9BYF1 805 aaPredicted RBP18.45■□□□□ 0.54
SDC1-203ENST00000403076 OR51B4Q9Y5P0 310 aa18.45■□□□□ 0.54
SDC1-203ENST00000403076 MATN3O15232 486 aa18.44■□□□□ 0.54
SDC1-203ENST00000403076 SRFP11831 508 aa18.44■□□□□ 0.54
SDC1-203ENST00000403076 VAV1P15498 845 aa18.44■□□□□ 0.54
SDC1-203ENST00000403076 ACTN2P35609 894 aa18.44■□□□□ 0.54
SDC1-203ENST00000403076 OPRD1P41143 372 aa18.44■□□□□ 0.54
SDC1-203ENST00000403076 DR1Q01658 176 aa18.44■□□□□ 0.54
SDC1-203ENST00000403076 PPP1R7Q15435 360 aa18.44■□□□□ 0.54
SDC1-203ENST00000403076 FUT11Q495W5 492 aa18.44■□□□□ 0.54
SDC1-203ENST00000403076 MBLAC2Q68D91 279 aa18.44■□□□□ 0.54
SDC1-203ENST00000403076 CCDC70Q6NSX1 233 aa18.44■□□□□ 0.54
SDC1-203ENST00000403076 RETSATQ6NUM9 610 aa18.44■□□□□ 0.54
SDC1-203ENST00000403076 NUDT18Q6ZVK8 323 aa18.44■□□□□ 0.54
SDC1-203ENST00000403076 MAATS1Q7Z4T9 603 aa18.44■□□□□ 0.54
SDC1-203ENST00000403076 MMGT1Q8N4V1 131 aa18.44■□□□□ 0.54
SDC1-203ENST00000403076 DDX51Q8N8A6 666 aaKnown RBP eCLIP18.44■□□□□ 0.54
SDC1-203ENST00000403076 USP33Q8TEY7 942 aa18.44■□□□□ 0.54
SDC1-203ENST00000403076 ACDQ96AP0 544 aa18.44■□□□□ 0.54
SDC1-203ENST00000403076 C8orf33Q9H7E9 229 aaPredicted RBP18.44■□□□□ 0.54
SDC1-203ENST00000403076 HEBP1Q9NRV9 189 aa18.44■□□□□ 0.54
SDC1-203ENST00000403076 UBA2Q9UBT2 640 aaPredicted RBP18.44■□□□□ 0.54
SDC1-203ENST00000403076 PCYOX1Q9UHG3 505 aa18.44■□□□□ 0.54
SDC1-203ENST00000403076 VPS51Q9UID3 782 aa18.44■□□□□ 0.54
SDC1-203ENST00000403076 INTS6Q9UL03 887 aaKnown RBP18.44■□□□□ 0.54
SDC1-203ENST00000403076 SLC27A6Q9Y2P4 619 aa18.44■□□□□ 0.54
SDC1-203ENST00000403076 PIAS3Q9Y6X2 628 aa18.44■□□□□ 0.54
SDC1-203ENST00000403076 TBC1D3BA6NDS4 549 aa18.44■□□□□ 0.54
SDC1-203ENST00000403076 ZSCAN5CA6NGD5 496 aaPredicted RBP18.44■□□□□ 0.54
SDC1-203ENST00000403076 JCHAINP01591 159 aa18.44■□□□□ 0.54
SDC1-203ENST00000403076 CCNB1P14635 433 aa18.44■□□□□ 0.54
SDC1-203ENST00000403076 EIF2DP41214 584 aaKnown RBP18.44■□□□□ 0.54
SDC1-203ENST00000403076 CLCN6P51797 869 aa18.44■□□□□ 0.54
SDC1-203ENST00000403076 SULT2A1Q06520 285 aa18.44■□□□□ 0.54
SDC1-203ENST00000403076 DHX34Q14147 1143 aaKnown RBP18.44■□□□□ 0.54
SDC1-203ENST00000403076 GEN1Q17RS7 908 aa18.44■□□□□ 0.54
SDC1-203ENST00000403076 C8orf74Q6P047 294 aa18.44■□□□□ 0.54
SDC1-203ENST00000403076 ALLCQ8N6M5 410 aa18.44■□□□□ 0.54
SDC1-203ENST00000403076 NOA1Q8NC60 698 aaKnown RBP18.44■□□□□ 0.54
SDC1-203ENST00000403076 LRRN4CLQ8ND94 238 aa18.44■□□□□ 0.54
SDC1-203ENST00000403076 EXOC4Q96A65 974 aa18.44■□□□□ 0.54
SDC1-203ENST00000403076 ASB2Q96Q27 587 aa18.44■□□□□ 0.54
SDC1-203ENST00000403076 CIPCQ9C0C6 399 aa18.44■□□□□ 0.54
SDC1-203ENST00000403076 USP29Q9HBJ7 922 aa18.44■□□□□ 0.54
SDC1-203ENST00000403076 SPECC1L-ADORA2AF8WAN1 911 aa18.43■□□□□ 0.54
SDC1-203ENST00000403076 APODP05090 189 aa18.43■□□□□ 0.54
SDC1-203ENST00000403076 GDF10P55107 478 aa18.43■□□□□ 0.54
SDC1-203ENST00000403076 GEMIN4P57678 1058 aaKnown RBP18.43■□□□□ 0.54
SDC1-203ENST00000403076 MRPS25P82663 173 aaKnown RBP18.43■□□□□ 0.54
SDC1-203ENST00000403076 TEX35Q5T0J7 233 aa18.43■□□□□ 0.54
SDC1-203ENST00000403076 TMCO4Q5TGY1 634 aa18.43■□□□□ 0.54
SDC1-203ENST00000403076 MARC1Q5VT66 337 aa18.43■□□□□ 0.54
SDC1-203ENST00000403076 NAIF1Q69YI7 327 aaPredicted RBP18.43■□□□□ 0.54
SDC1-203ENST00000403076 LINGO4Q6UY18 593 aa18.43■□□□□ 0.54
SDC1-203ENST00000403076 KIAA0907Q7Z7F0 614 aaPredicted RBP18.43■□□□□ 0.54
SDC1-203ENST00000403076 RALGPS2Q86X27 583 aaPredicted RBP18.43■□□□□ 0.54
SDC1-203ENST00000403076 CHFRQ96EP1 664 aa18.43■□□□□ 0.54
SDC1-203ENST00000403076 ZNF599Q96NL3 588 aa18.43■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 55.6 ms