RNA–Protein interactions for RNA: ENST00000400018.7

SKA3-203, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SKA3, Length 2,745 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-203ENST00000400018 IPO11Q9UI26 975 aaKnown RBP11.96□□□□□ -0.49
SKA3-203ENST00000400018 C1RP00736 705 aa11.95□□□□□ -0.5
SKA3-203ENST00000400018 PIRTP0C851 137 aa11.95□□□□□ -0.5
SKA3-203ENST00000400018 SLC11A2P49281 568 aa11.95□□□□□ -0.5
SKA3-203ENST00000400018 CREMQ03060 361 aa11.95□□□□□ -0.5
SKA3-203ENST00000400018 POLD3Q15054 466 aaPredicted RBP11.95□□□□□ -0.5
SKA3-203ENST00000400018 CCDC38Q502W7 563 aa11.95□□□□□ -0.5
SKA3-203ENST00000400018 TANGO2Q6ICL3 276 aa11.95□□□□□ -0.5
SKA3-203ENST00000400018 FAM43BQ6ZT52 329 aaPredicted RBP11.95□□□□□ -0.5
SKA3-203ENST00000400018 C12orf40Q86WS4 652 aa11.95□□□□□ -0.5
SKA3-203ENST00000400018 ATPAF2Q8N5M1 289 aa11.95□□□□□ -0.5
SKA3-203ENST00000400018 TMA16Q96EY4 203 aaKnown RBP11.95□□□□□ -0.5
SKA3-203ENST00000400018 QKIQ96PU8 341 aaKnown RBP eCLIP11.95□□□□□ -0.5
SKA3-203ENST00000400018 MYADMQ96S97 322 aa11.95□□□□□ -0.5
SKA3-203ENST00000400018 RBM15Q96T37 977 aaKnown RBP eCLIP11.95□□□□□ -0.5
SKA3-203ENST00000400018 FMO2Q99518 471 aa11.95□□□□□ -0.5
SKA3-203ENST00000400018 MUC3BQ9H195 1237 aa11.95□□□□□ -0.5
SKA3-203ENST00000400018 ARFGAP3Q9NP61 516 aa11.95□□□□□ -0.5
SKA3-203ENST00000400018 GTSE1Q9NYZ3 720 aa11.95□□□□□ -0.5
SKA3-203ENST00000400018 PMPCBO75439 489 aa11.95□□□□□ -0.5
SKA3-203ENST00000400018 HLA-DQB2P05538 268 aa11.95□□□□□ -0.5
SKA3-203ENST00000400018 SOX9P48436 509 aa11.95□□□□□ -0.5
SKA3-203ENST00000400018 SESN2P58004 480 aaPredicted RBP11.95□□□□□ -0.5
SKA3-203ENST00000400018 CASP8Q14790 479 aa11.95□□□□□ -0.5
SKA3-203ENST00000400018 BBS9Q3SYG4 887 aa11.95□□□□□ -0.5
SKA3-203ENST00000400018 LY6G5CQ5SRR4 150 aa11.95□□□□□ -0.5
SKA3-203ENST00000400018 IER5LQ5T953 404 aa11.95□□□□□ -0.5
SKA3-203ENST00000400018 BEND5Q7L4P6 421 aa11.95□□□□□ -0.5
SKA3-203ENST00000400018 PGBD5Q8N414 524 aa11.95□□□□□ -0.5
SKA3-203ENST00000400018 FGF14Q92915 247 aa11.95□□□□□ -0.5
SKA3-203ENST00000400018 SNF8Q96H20 258 aa11.95□□□□□ -0.5
SKA3-203ENST00000400018 FUT8Q9BYC5 575 aa11.95□□□□□ -0.5
SKA3-203ENST00000400018 TM6SF2Q9BZW4 377 aa11.95□□□□□ -0.5
SKA3-203ENST00000400018 CENPHQ9H3R5 247 aa11.95□□□□□ -0.5
SKA3-203ENST00000400018 PRDM6Q9NQX0 595 aa11.95□□□□□ -0.5
SKA3-203ENST00000400018 ADAM21Q9UKJ8 722 aa11.95□□□□□ -0.5
SKA3-203ENST00000400018 COL4A3Q01955 1670 aa11.95□□□□□ -0.5
SKA3-203ENST00000400018 CCDC189A1A4V9 331 aa11.95□□□□□ -0.5
SKA3-203ENST00000400018 TARSL2A2RTX5 802 aaKnown RBP11.95□□□□□ -0.5
SKA3-203ENST00000400018 SMAD6O43541 496 aaKnown RBP11.95□□□□□ -0.5
SKA3-203ENST00000400018 BUD23O43709 281 aaKnown RBP11.95□□□□□ -0.5
SKA3-203ENST00000400018 XYLBO75191 536 aa11.95□□□□□ -0.5
SKA3-203ENST00000400018 OLFM2O95897 454 aa11.95□□□□□ -0.5
SKA3-203ENST00000400018 CDC25CP30307 473 aa11.95□□□□□ -0.5
SKA3-203ENST00000400018 CSKP41240 450 aa11.95□□□□□ -0.5
SKA3-203ENST00000400018 DSC2Q02487 901 aa11.95□□□□□ -0.5
SKA3-203ENST00000400018 EFTUD2Q15029 972 aaKnown RBP eCLIP11.95□□□□□ -0.51e-8■■■■■ 36.9
SKA3-203ENST00000400018 POM121L1PQ3SYA9 428 aa11.95□□□□□ -0.5
SKA3-203ENST00000400018 RNASEH2BQ5TBB1 312 aaKnown RBP11.95□□□□□ -0.5
SKA3-203ENST00000400018 CXorf57Q6NSI4 855 aaKnown RBP11.95□□□□□ -0.5
SKA3-203ENST00000400018 OXNAD1Q96HP4 312 aaPredicted RBP11.95□□□□□ -0.5
SKA3-203ENST00000400018 RAB17Q9H0T7 212 aa11.95□□□□□ -0.5
SKA3-203ENST00000400018 POMKQ9H5K3 350 aa11.95□□□□□ -0.5
SKA3-203ENST00000400018 RBM22Q9NW64 420 aaKnown RBP eCLIP11.95□□□□□ -0.55e-6■■□□□ 13.6
SKA3-203ENST00000400018 HSFX1Q9UBD0 423 aa11.95□□□□□ -0.5
SKA3-203ENST00000400018 FCF1Q9Y324 198 aaKnown RBP11.95□□□□□ -0.5
SKA3-203ENST00000400018 HBS1LQ9Y450 684 aaKnown RBP11.95□□□□□ -0.5
SKA3-203ENST00000400018 MTCH2Q9Y6C9 303 aa11.95□□□□□ -0.5
SKA3-203ENST00000400018 SDK1Q7Z5N4 2213 aa11.94□□□□□ -0.5
SKA3-203ENST00000400018 CCDC151A5D8V7 595 aa11.94□□□□□ -0.5
SKA3-203ENST00000400018 CCL22O00626 93 aa11.94□□□□□ -0.5
SKA3-203ENST00000400018 DNALI1O14645 258 aaPredicted RBP11.94□□□□□ -0.5
SKA3-203ENST00000400018 RAMP2O60895 175 aa11.94□□□□□ -0.5
SKA3-203ENST00000400018 CCNB1P14635 433 aa11.94□□□□□ -0.5
SKA3-203ENST00000400018 GBP2P32456 591 aaPredicted RBP11.94□□□□□ -0.5
SKA3-203ENST00000400018 ACTN2P35609 894 aa11.94□□□□□ -0.5
SKA3-203ENST00000400018 CALCOCO2Q13137 446 aa11.94□□□□□ -0.5
SKA3-203ENST00000400018 PRKD1Q15139 912 aaPredicted RBP11.94□□□□□ -0.5
SKA3-203ENST00000400018 LRRC73Q5JTD7 316 aa11.94□□□□□ -0.5
SKA3-203ENST00000400018 PARM1Q6UWI2 310 aa11.94□□□□□ -0.5
SKA3-203ENST00000400018 ARHGEF18Q6ZSZ5 1173 aa11.94□□□□□ -0.5
SKA3-203ENST00000400018 CACUL1Q86Y37 369 aa11.94□□□□□ -0.5
SKA3-203ENST00000400018 MAIP1Q8WWC4 291 aa11.94□□□□□ -0.5
SKA3-203ENST00000400018 ART4Q93070 314 aa11.94□□□□□ -0.5
SKA3-203ENST00000400018 SGSM3Q96HU1 749 aa11.94□□□□□ -0.5
SKA3-203ENST00000400018 TRIM62Q9BVG3 475 aa11.94□□□□□ -0.5
SKA3-203ENST00000400018 SAYSD1Q9NPB0 183 aa11.94□□□□□ -0.5
SKA3-203ENST00000400018 CHMP2BQ9UQN3 213 aa11.94□□□□□ -0.5
SKA3-203ENST00000400018 EFR3BQ9Y2G0 817 aa11.94□□□□□ -0.5
SKA3-203ENST00000400018 GON4LQ3T8J9 2241 aa11.94□□□□□ -0.5
SKA3-203ENST00000400018 FAM187AA6NFU0 413 aa11.94□□□□□ -0.5
SKA3-203ENST00000400018 A8MX80 341 aa11.94□□□□□ -0.5
SKA3-203ENST00000400018 GOLGA8KD6RF30 607 aa11.94□□□□□ -0.5
SKA3-203ENST00000400018 GOLGA8TH3BQL2 631 aa11.94□□□□□ -0.5
SKA3-203ENST00000400018 AGTP01019 485 aa11.94□□□□□ -0.5
SKA3-203ENST00000400018 SLC4A1P02730 911 aa11.94□□□□□ -0.5
SKA3-203ENST00000400018 SLC2A3P11169 496 aa11.94□□□□□ -0.5
SKA3-203ENST00000400018 KCNA5P22460 613 aa11.94□□□□□ -0.5
SKA3-203ENST00000400018 HOXD9P28356 352 aaPredicted RBP11.94□□□□□ -0.5
SKA3-203ENST00000400018 SSTR1P30872 391 aa11.94□□□□□ -0.5
SKA3-203ENST00000400018 PGGT1BP53609 377 aa11.94□□□□□ -0.5
SKA3-203ENST00000400018 RING1Q06587 406 aa11.94□□□□□ -0.5
SKA3-203ENST00000400018 GALNT2Q10471 571 aa11.94□□□□□ -0.5
SKA3-203ENST00000400018 GLE1Q53GS7 698 aaKnown RBP11.94□□□□□ -0.5
SKA3-203ENST00000400018 ATXN7L2Q5T6C5 722 aaPredicted RBP11.94□□□□□ -0.5
SKA3-203ENST00000400018 Q6ZNB5 142 aa11.94□□□□□ -0.5
SKA3-203ENST00000400018 MFN1Q8IWA4 741 aa11.94□□□□□ -0.5
SKA3-203ENST00000400018 ZBED8Q8IZ13 594 aa11.94□□□□□ -0.5
SKA3-203ENST00000400018 SLC25A41Q8N5S1 370 aa11.94□□□□□ -0.5
SKA3-203ENST00000400018 TTC13Q8NBP0 860 aa11.94□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 54.8 ms