RNA–Protein interactions for RNA: ENST00000374876.4

CCDC40-202, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best) BASIC

Gene CCDC40, Length 2,010 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-202ENST00000374876 ELF1P32519 619 aa15.9■□□□□ 0.14
CCDC40-202ENST00000374876 FDFT1P37268 417 aa15.9■□□□□ 0.14
CCDC40-202ENST00000374876 ETV4P43268 484 aa15.9■□□□□ 0.14
CCDC40-202ENST00000374876 GTF2A1P52655 376 aaPredicted RBP15.9■□□□□ 0.14
CCDC40-202ENST00000374876 TSPY1Q01534 308 aa15.9■□□□□ 0.14
CCDC40-202ENST00000374876 DUSP4Q13115 394 aa15.9■□□□□ 0.14
CCDC40-202ENST00000374876 NME3Q13232 169 aa15.9■□□□□ 0.14
CCDC40-202ENST00000374876 RIPK1Q13546 671 aa15.9■□□□□ 0.14
CCDC40-202ENST00000374876 INTS6LQ5JSJ4 861 aaKnown RBP15.9■□□□□ 0.14
CCDC40-202ENST00000374876 ANKRD20A2Q5SQ80 823 aa15.9■□□□□ 0.14
CCDC40-202ENST00000374876 RARS2Q5T160 578 aaKnown RBP15.9■□□□□ 0.14
CCDC40-202ENST00000374876 SWT1Q5T5J6 900 aaKnown RBP15.9■□□□□ 0.14
CCDC40-202ENST00000374876 ANKRD20A1Q5TYW2 823 aa15.9■□□□□ 0.14
CCDC40-202ENST00000374876 ANKRD20A3Q5VUR7 823 aa15.9■□□□□ 0.14
CCDC40-202ENST00000374876 TPGS2Q68CL5 300 aa15.9■□□□□ 0.14
CCDC40-202ENST00000374876 CHSY1Q86X52 802 aa15.9■□□□□ 0.14
CCDC40-202ENST00000374876 TTC9BQ8N6N2 239 aa15.9■□□□□ 0.14
CCDC40-202ENST00000374876 ZNF398Q8TD17 642 aa15.9■□□□□ 0.14
CCDC40-202ENST00000374876 RNF139Q8WU17 664 aa15.9■□□□□ 0.14
CCDC40-202ENST00000374876 SPATA13Q96N96 652 aa15.9■□□□□ 0.14
CCDC40-202ENST00000374876 LGMNQ99538 433 aa15.9■□□□□ 0.14
CCDC40-202ENST00000374876 SYT15Q9BQS2 421 aa15.9■□□□□ 0.14
CCDC40-202ENST00000374876 TSSK1BQ9BXA7 367 aa15.9■□□□□ 0.14
CCDC40-202ENST00000374876 CRTAC1Q9NQ79 661 aa15.9■□□□□ 0.14
CCDC40-202ENST00000374876 AFF4Q9UHB7 1163 aaKnown RBP15.9■□□□□ 0.14
CCDC40-202ENST00000374876 TRIM33Q9UPN9 1127 aa15.9■□□□□ 0.14
CCDC40-202ENST00000374876 CCDC195A0A1B0GUA6 201 aa15.9■□□□□ 0.14
CCDC40-202ENST00000374876 MTMR11A4FU01 709 aa15.9■□□□□ 0.14
CCDC40-202ENST00000374876 PRRG1O14668 218 aa15.9■□□□□ 0.14
CCDC40-202ENST00000374876 MFSD11O43934 449 aa15.9■□□□□ 0.14
CCDC40-202ENST00000374876 C8AP07357 584 aa15.9■□□□□ 0.14
CCDC40-202ENST00000374876 KRT16P08779 473 aa15.9■□□□□ 0.14
CCDC40-202ENST00000374876 FAM163BP0C2L3 166 aa15.9■□□□□ 0.14
CCDC40-202ENST00000374876 FAM200BP0CF97 657 aa15.9■□□□□ 0.14
CCDC40-202ENST00000374876 VAV1P15498 845 aa15.9■□□□□ 0.14
CCDC40-202ENST00000374876 PCSK1P29120 753 aa15.9■□□□□ 0.14
CCDC40-202ENST00000374876 SLC8A1P32418 973 aa15.9■□□□□ 0.14
CCDC40-202ENST00000374876 MAP3K7CLP57077 242 aa15.9■□□□□ 0.14
CCDC40-202ENST00000374876 AP1B1Q10567 949 aa15.9■□□□□ 0.14
CCDC40-202ENST00000374876 CLEC20AQ6ZU45 233 aa15.9■□□□□ 0.14
CCDC40-202ENST00000374876 PAQR9Q6ZVX9 377 aa15.9■□□□□ 0.14
CCDC40-202ENST00000374876 DCP1BQ8IZD4 617 aaKnown RBP15.9■□□□□ 0.14
CCDC40-202ENST00000374876 MPP5Q8N3R9 675 aa15.9■□□□□ 0.14
CCDC40-202ENST00000374876 PTPRN2Q92932 1015 aa15.9■□□□□ 0.14
CCDC40-202ENST00000374876 MTBPQ96DY7 904 aa15.9■□□□□ 0.14
CCDC40-202ENST00000374876 SRPK1Q96SB4 655 aaKnown RBP15.9■□□□□ 0.14
CCDC40-202ENST00000374876 NPY6RQ99463 290 aa15.9■□□□□ 0.14
CCDC40-202ENST00000374876 S1PR5Q9H228 398 aa15.9■□□□□ 0.14
CCDC40-202ENST00000374876 CD207Q9UJ71 328 aa15.9■□□□□ 0.14
CCDC40-202ENST00000374876 CDH9Q9ULB4 789 aa15.9■□□□□ 0.14
CCDC40-202ENST00000374876 STK38LQ9Y2H1 464 aa15.9■□□□□ 0.14
CCDC40-202ENST00000374876 CREB3O43889 395 aa15.89■□□□□ 0.13
CCDC40-202ENST00000374876 SOAT2O75908 522 aa15.89■□□□□ 0.13
CCDC40-202ENST00000374876 GRIA1P42261 906 aa15.89■□□□□ 0.13
CCDC40-202ENST00000374876 TKTL1P51854 596 aa15.89■□□□□ 0.13
CCDC40-202ENST00000374876 PITX1P78337 314 aaPredicted RBP15.89■□□□□ 0.13
CCDC40-202ENST00000374876 CDK16Q00536 496 aa15.89■□□□□ 0.13
CCDC40-202ENST00000374876 DEUP1Q05D60 604 aa15.89■□□□□ 0.13
CCDC40-202ENST00000374876 OVGP1Q12889 678 aa15.89■□□□□ 0.13
CCDC40-202ENST00000374876 OTUD1Q5VV17 481 aaPredicted RBP15.89■□□□□ 0.13
CCDC40-202ENST00000374876 NLRP9Q7RTR0 991 aa15.89■□□□□ 0.13
CCDC40-202ENST00000374876 NT5C3BQ969T7 300 aa15.89■□□□□ 0.13
CCDC40-202ENST00000374876 PKMYT1Q99640 499 aa15.89■□□□□ 0.13
CCDC40-202ENST00000374876 TRIM55Q9BYV6 548 aa15.89■□□□□ 0.13
CCDC40-202ENST00000374876 SMYD2Q9NRG4 433 aa15.89■□□□□ 0.13
CCDC40-202ENST00000374876 KRT82Q9NSB4 513 aa15.89■□□□□ 0.13
CCDC40-202ENST00000374876 DZANK1Q9NVP4 752 aa15.89■□□□□ 0.13
CCDC40-202ENST00000374876 ABI2Q9NYB9 513 aaPredicted RBP15.89■□□□□ 0.13
CCDC40-202ENST00000374876 DCTN4Q9UJW0 460 aa15.89■□□□□ 0.13
CCDC40-202ENST00000374876 FAM159BA6NKW6 160 aa15.89■□□□□ 0.13
CCDC40-202ENST00000374876 F5H423 210 aaPredicted RBP15.89■□□□□ 0.13
CCDC40-202ENST00000374876 CAPN9O14815 690 aa15.89■□□□□ 0.13
CCDC40-202ENST00000374876 C1RP00736 705 aa15.89■□□□□ 0.13
CCDC40-202ENST00000374876 CSH1P0DML2 217 aa15.89■□□□□ 0.13
CCDC40-202ENST00000374876 CSH2P0DML3 217 aa15.89■□□□□ 0.13
CCDC40-202ENST00000374876 KCNQ1P51787 676 aa15.89■□□□□ 0.13
CCDC40-202ENST00000374876 PDK1Q15118 436 aa15.89■□□□□ 0.13
CCDC40-202ENST00000374876 PPM1LQ5SGD2 360 aa15.89■□□□□ 0.13
CCDC40-202ENST00000374876 CASC4Q6P4E1 433 aa15.89■□□□□ 0.13
CCDC40-202ENST00000374876 FAM171BQ6P995 826 aa15.89■□□□□ 0.13
CCDC40-202ENST00000374876 TRMT10BQ6PF06 316 aaKnown RBP15.89■□□□□ 0.13
CCDC40-202ENST00000374876 TCEAL8Q8IYN2 117 aa15.89■□□□□ 0.13
CCDC40-202ENST00000374876 CCNYQ8ND76 341 aa15.89■□□□□ 0.13
CCDC40-202ENST00000374876 DEPDC1BQ8WUY9 529 aa15.89■□□□□ 0.13
CCDC40-202ENST00000374876 STAMBPL1Q96FJ0 436 aa15.89■□□□□ 0.13
CCDC40-202ENST00000374876 SLC2A13Q96QE2 648 aa15.89■□□□□ 0.13
CCDC40-202ENST00000374876 RAB3IPQ96QF0 476 aaPredicted RBP15.89■□□□□ 0.13
CCDC40-202ENST00000374876 TRIM56Q9BRZ2 755 aaKnown RBP15.89■□□□□ 0.13
CCDC40-202ENST00000374876 RHOBTB2Q9BYZ6 727 aa15.89■□□□□ 0.13
CCDC40-202ENST00000374876 TMPRSS4Q9NRS4 437 aa15.89■□□□□ 0.13
CCDC40-202ENST00000374876 THEGQ9P2T0 379 aa15.89■□□□□ 0.13
CCDC40-202ENST00000374876 DPP7Q9UHL4 492 aa15.89■□□□□ 0.13
CCDC40-202ENST00000374876 RNF103O00237 685 aa15.88■□□□□ 0.13
CCDC40-202ENST00000374876 CCL16O15467 120 aa15.88■□□□□ 0.13
CCDC40-202ENST00000374876 UGT1A9O60656 530 aa15.88■□□□□ 0.13
CCDC40-202ENST00000374876 OPHN1O60890 802 aa15.88■□□□□ 0.13
CCDC40-202ENST00000374876 MLNP12872 115 aa15.88■□□□□ 0.13
CCDC40-202ENST00000374876 HOXB8P17481 243 aaPredicted RBP15.88■□□□□ 0.13
CCDC40-202ENST00000374876 BGNP21810 368 aa15.88■□□□□ 0.13
CCDC40-202ENST00000374876 TARSP26639 723 aaKnown RBP15.88■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms