RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 SLC15A5A6NIM6 579 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 TRAPPC3O43617 180 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 CAND2O75155 1236 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 TACC1O75410 805 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 HEXIM1O94992 359 aaKnown RBP2.41□□□□□ -2.02
VPS54-202ENST00000354504 FGFR1OPO95684 399 aaKnown RBP2.41□□□□□ -2.02
VPS54-202ENST00000354504 LSM8O95777 96 aaKnown RBP2.41□□□□□ -2.02
VPS54-202ENST00000354504 CD4P01730 458 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 VTNP04004 478 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 ITGB1P05556 798 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 CELA3BP08861 270 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 ZGLP1P0C6A0 271 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 CTAGE8P0CG41 777 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 SMIM10L2AP0DMW4 78 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 SMIM10L2BP0DMW5 78 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 MCF2P10911 925 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 CD8BP10966 210 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 DRD4P21917 467 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 FUT4P22083 530 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 FGFR4P22455 802 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 LTBRP36941 435 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 ATXN1P54253 815 aaKnown RBP2.41□□□□□ -2.02
VPS54-202ENST00000354504 HNRNPH2P55795 449 aaKnown RBP2.41□□□□□ -2.02
VPS54-202ENST00000354504 IL2P60568 153 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 TUBB4BP68371 445 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 IFI35P80217 286 aaPredicted RBP2.41□□□□□ -2.02
VPS54-202ENST00000354504 FAM189BP81408 668 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 KIF5AQ12840 1032 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 DMP1Q13316 513 aaPredicted RBP2.41□□□□□ -2.02
VPS54-202ENST00000354504 PIN1Q13526 163 aaPredicted RBP2.41□□□□□ -2.02
VPS54-202ENST00000354504 ITGA7Q13683 1181 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 ACVR2BQ13705 512 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 RTP5Q14D33 572 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 ZNF484Q5JVG2 852 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 SYCP2LQ5T4T6 812 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 ERMARDQ5T6L9 678 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 CYP4F22Q6NT55 531 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 EFCAB12Q6NXP0 572 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 MFSD7Q6UXD7 560 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 RNF111Q6ZNA4 994 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 SEPT14Q6ZU15 432 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 ENOSF1Q7L5Y1 443 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 TMPRSS7Q7RTY8 843 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 CTAGE6Q86UF2 777 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 SERINC5Q86VE9 423 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 CDR2LQ86X02 465 aaPredicted RBP2.41□□□□□ -2.02
VPS54-202ENST00000354504 TDRPQ86YL5 185 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 CTAGE4Q8IX94 777 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 RHOT2Q8IXI1 618 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 RASSF8Q8NHQ8 419 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 U2AF1L4Q8WU68 220 aaKnown RBP2.41□□□□□ -2.02
VPS54-202ENST00000354504 ATG4AQ8WYN0 398 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 DIO2Q92813 273 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 ATP6V0A1Q93050 837 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 CENPTQ96BT3 561 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 MYEOVQ96EZ4 313 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 PGM2Q96G03 612 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 CDHR1Q96JP9 859 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 ZNF778Q96MU6 729 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 C20orf27Q9GZN8 174 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 WNT8AQ9H1J5 351 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 ZMAT4Q9H898 229 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 ETNK2Q9NVF9 386 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 RBAKQ9NYW8 714 aaPredicted RBP2.41□□□□□ -2.02
VPS54-202ENST00000354504 CACNG4Q9UBN1 327 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 TUBD1Q9UJT1 453 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 TEX264Q9Y6I9 313 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 RELNP78509 3460 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 AKAP9Q99996 3911 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 FAM170AA1A519 330 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 FAM72CH0Y354 149 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 M0QZQ0 153 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 ACOT7O00154 380 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 PGRMC1O00264 195 aaKnown RBP2.41□□□□□ -2.02
VPS54-202ENST00000354504 DNM1LO00429 736 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 DCLK1O15075 740 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 BANF1O75531 89 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 TRUB2O95900 331 aaKnown RBP2.41□□□□□ -2.02
VPS54-202ENST00000354504 FGGP02679 453 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 PRKCBP05771 671 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 H2AFZP0C0S5 128 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 STAG3L1P0CL83 205 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 T-ENOLP0DO92 83 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 DARSP14868 501 aaKnown RBP2.41□□□□□ -2.02
VPS54-202ENST00000354504 RPL13P26373 211 aaKnown RBP2.41□□□□□ -2.02
VPS54-202ENST00000354504 MC4RP32245 332 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 FOXN2P32314 431 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 CLCN7P51798 805 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 MRPS5P82675 430 aaKnown RBP2.41□□□□□ -2.02
VPS54-202ENST00000354504 SMAD3P84022 425 aaKnown RBP2.41□□□□□ -2.02
VPS54-202ENST00000354504 POU4F1Q01851 419 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 MVKQ03426 396 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 DSC1Q08554 894 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 NEDD9Q14511 834 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 PRKD1Q15139 912 aaPredicted RBP2.41□□□□□ -2.02
VPS54-202ENST00000354504 SMAD2Q15796 467 aaKnown RBP2.41□□□□□ -2.02
VPS54-202ENST00000354504 UPP1Q16831 310 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 CCDC40Q4G0X9 1142 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 TEX44Q53QW1 395 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 FBLN7Q53RD9 439 aa2.41□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms