RNA–Protein interactions for RNA: ENST00000345734.7

ATG4A-202, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 1 (best) BASIC

Gene ATG4A, Length 2,129 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-202ENST00000345734 ATXN2LQ8WWM7 1075 aaKnown RBP9.46□□□□□ -0.89
ATG4A-202ENST00000345734 CFAP36Q96G28 342 aa9.46□□□□□ -0.89
ATG4A-202ENST00000345734 CELF6Q96J87 481 aaKnown RBP9.46□□□□□ -0.89
ATG4A-202ENST00000345734 TOX2Q96NM4 488 aa9.46□□□□□ -0.89
ATG4A-202ENST00000345734 SEPT5Q99719 369 aaPredicted RBP9.46□□□□□ -0.89
ATG4A-202ENST00000345734 TTPALQ9BTX7 342 aa9.46□□□□□ -0.89
ATG4A-202ENST00000345734 VN1R3Q9BXE9 311 aa9.46□□□□□ -0.89
ATG4A-202ENST00000345734 FAM107BQ9H098 131 aa9.46□□□□□ -0.89
ATG4A-202ENST00000345734 OSBPL2Q9H1P3 480 aa9.46□□□□□ -0.89
ATG4A-202ENST00000345734 TBX21Q9UL17 535 aa9.46□□□□□ -0.89
ATG4A-202ENST00000345734 COL4A6Q14031 1691 aa9.46□□□□□ -0.9
ATG4A-202ENST00000345734 TBX18O95935 607 aa9.46□□□□□ -0.9
ATG4A-202ENST00000345734 MOCS2O96007 188 aaPredicted RBP9.46□□□□□ -0.9
ATG4A-202ENST00000345734 RPL17P18621 184 aaKnown RBP9.46□□□□□ -0.9
ATG4A-202ENST00000345734 TPSB2P20231 275 aa9.46□□□□□ -0.9
ATG4A-202ENST00000345734 PSMB4P28070 264 aa9.46□□□□□ -0.9
ATG4A-202ENST00000345734 ATP5DP30049 168 aa9.46□□□□□ -0.9
ATG4A-202ENST00000345734 CCR1P32246 355 aa9.46□□□□□ -0.9
ATG4A-202ENST00000345734 PHBP35232 272 aa9.46□□□□□ -0.9
ATG4A-202ENST00000345734 MPP2Q14168 576 aa9.46□□□□□ -0.9
ATG4A-202ENST00000345734 TPSAB1Q15661 275 aa9.46□□□□□ -0.9
ATG4A-202ENST00000345734 C4orf22Q6V702 233 aa9.46□□□□□ -0.9
ATG4A-202ENST00000345734 PDZD4Q76G19 769 aaPredicted RBP9.46□□□□□ -0.9
ATG4A-202ENST00000345734 C14orf80Q86SX3 495 aa9.46□□□□□ -0.9
ATG4A-202ENST00000345734 NLRP14Q86W24 1093 aa9.46□□□□□ -0.9
ATG4A-202ENST00000345734 TDRPQ86YL5 185 aa9.46□□□□□ -0.9
ATG4A-202ENST00000345734 SRRM1Q8IYB3 904 aaKnown RBP9.46□□□□□ -0.9
ATG4A-202ENST00000345734 MPP5Q8N3R9 675 aa9.46□□□□□ -0.9
ATG4A-202ENST00000345734 MGARPQ8TDB4 240 aa9.46□□□□□ -0.9
ATG4A-202ENST00000345734 CRELD1Q96HD1 420 aa9.46□□□□□ -0.9
ATG4A-202ENST00000345734 XPO6Q96QU8 1125 aaKnown RBP9.46□□□□□ -0.9
ATG4A-202ENST00000345734 TRIM56Q9BRZ2 755 aaKnown RBP9.46□□□□□ -0.9
ATG4A-202ENST00000345734 FBXO44Q9H4M3 255 aa9.46□□□□□ -0.9
ATG4A-202ENST00000345734 ACSS3Q9H6R3 686 aa9.46□□□□□ -0.9
ATG4A-202ENST00000345734 CWH43Q9H720 699 aa9.46□□□□□ -0.9
ATG4A-202ENST00000345734 PLAC1Q9HBJ0 212 aa9.46□□□□□ -0.9
ATG4A-202ENST00000345734 TMEM39AQ9NV64 488 aa9.46□□□□□ -0.9
ATG4A-202ENST00000345734 IL37Q9NZH6 218 aa9.46□□□□□ -0.9
ATG4A-202ENST00000345734 FNDC3AQ9Y2H6 1198 aaKnown RBP9.46□□□□□ -0.9
ATG4A-202ENST00000345734 CDY1Q9Y6F8 540 aa9.46□□□□□ -0.9
ATG4A-202ENST00000345734 TCRBV9S1A1TA0A576 114 aa9.45□□□□□ -0.9
ATG4A-202ENST00000345734 TMEM120BA0PK00 339 aa9.45□□□□□ -0.9
ATG4A-202ENST00000345734 DCDC2BA2VCK2 349 aa9.45□□□□□ -0.9
ATG4A-202ENST00000345734 KCNU1A8MYU2 1149 aa9.45□□□□□ -0.9
ATG4A-202ENST00000345734 OPHN1O60890 802 aa9.45□□□□□ -0.9
ATG4A-202ENST00000345734 STK10O94804 968 aaKnown RBP9.45□□□□□ -0.9
ATG4A-202ENST00000345734 RPLP1P05386 114 aaKnown RBP9.45□□□□□ -0.9
ATG4A-202ENST00000345734 BRAFP15056 766 aa9.45□□□□□ -0.9
ATG4A-202ENST00000345734 PTPN3P26045 913 aa9.45□□□□□ -0.9
ATG4A-202ENST00000345734 YWHAQP27348 245 aa9.45□□□□□ -0.9
ATG4A-202ENST00000345734 MAGEA3P43357 314 aa9.45□□□□□ -0.9
ATG4A-202ENST00000345734 GEMIN4P57678 1058 aaKnown RBP9.45□□□□□ -0.9
ATG4A-202ENST00000345734 PPIDQ08752 370 aaKnown RBP9.45□□□□□ -0.9
ATG4A-202ENST00000345734 GALNT2Q10471 571 aa9.45□□□□□ -0.9
ATG4A-202ENST00000345734 EFEMP1Q12805 493 aa9.45□□□□□ -0.9
ATG4A-202ENST00000345734 ELAVL2Q12926 359 aaKnown RBP9.45□□□□□ -0.9
ATG4A-202ENST00000345734 TAF10Q12962 218 aa9.45□□□□□ -0.9
ATG4A-202ENST00000345734 IKBKEQ14164 716 aa9.45□□□□□ -0.9
ATG4A-202ENST00000345734 PKN2Q16513 984 aaKnown RBP9.45□□□□□ -0.9
ATG4A-202ENST00000345734 BRMS1LQ5PSV4 323 aa9.45□□□□□ -0.9
ATG4A-202ENST00000345734 RASIP1Q5U651 963 aa9.45□□□□□ -0.9
ATG4A-202ENST00000345734 PDE12Q6L8Q7 609 aaKnown RBP9.45□□□□□ -0.9
ATG4A-202ENST00000345734 NXPE4Q6UWF7 544 aa9.45□□□□□ -0.9
ATG4A-202ENST00000345734 TADA2BQ86TJ2 420 aa9.45□□□□□ -0.9
ATG4A-202ENST00000345734 RIBC1Q8N443 379 aaPredicted RBP9.45□□□□□ -0.9
ATG4A-202ENST00000345734 FBXO32Q969P5 355 aa9.45□□□□□ -0.9
ATG4A-202ENST00000345734 ZNF333Q96JL9 665 aa9.45□□□□□ -0.9
ATG4A-202ENST00000345734 FCRL2Q96LA5 508 aaPredicted RBP9.45□□□□□ -0.9
ATG4A-202ENST00000345734 HAPLN3Q96S86 360 aa9.45□□□□□ -0.9
ATG4A-202ENST00000345734 PAFAH2Q99487 392 aa9.45□□□□□ -0.9
ATG4A-202ENST00000345734 KIF9Q9HAQ2 790 aa9.45□□□□□ -0.9
ATG4A-202ENST00000345734 MLXIPLQ9NP71 852 aa9.45□□□□□ -0.9
ATG4A-202ENST00000345734 KCNK9Q9NPC2 374 aa9.45□□□□□ -0.9
ATG4A-202ENST00000345734 LATS2Q9NRM7 1088 aa9.45□□□□□ -0.9
ATG4A-202ENST00000345734 INTS9Q9NV88 658 aaKnown RBP9.45□□□□□ -0.9
ATG4A-202ENST00000345734 PIH1D1Q9NWS0 290 aaKnown RBP9.45□□□□□ -0.9
ATG4A-202ENST00000345734 HS3ST4Q9Y661 456 aa9.45□□□□□ -0.9
ATG4A-202ENST00000345734 NYNRINQ9P2P1 1898 aaKnown RBP9.45□□□□□ -0.9
ATG4A-202ENST00000345734 RASA4BC9J798 803 aa9.44□□□□□ -0.9
ATG4A-202ENST00000345734 H7C4K7 107 aa9.44□□□□□ -0.9
ATG4A-202ENST00000345734 C2CD2LO14523 706 aa9.44□□□□□ -0.9
ATG4A-202ENST00000345734 NDUFAB1O14561 156 aa9.44□□□□□ -0.9
ATG4A-202ENST00000345734 RASA4O43374 803 aa9.44□□□□□ -0.9
ATG4A-202ENST00000345734 PARNO95453 639 aaKnown RBP9.44□□□□□ -0.9
ATG4A-202ENST00000345734 HAPLN1P10915 354 aaPredicted RBP9.44□□□□□ -0.9
ATG4A-202ENST00000345734 TSHRP16473 764 aa9.44□□□□□ -0.9
ATG4A-202ENST00000345734 ITGB8P26012 769 aa9.44□□□□□ -0.9
ATG4A-202ENST00000345734 FDFT1P37268 417 aa9.44□□□□□ -0.9
ATG4A-202ENST00000345734 GARSP41250 739 aaKnown RBP9.44□□□□□ -0.9
ATG4A-202ENST00000345734 CCT5P48643 541 aa9.44□□□□□ -0.9
ATG4A-202ENST00000345734 ALDH7A1P49419 539 aaKnown RBP9.44□□□□□ -0.9
ATG4A-202ENST00000345734 ZBTB17Q13105 803 aa9.44□□□□□ -0.9
ATG4A-202ENST00000345734 OLIG2Q13516 323 aa9.44□□□□□ -0.9
ATG4A-202ENST00000345734 SPARCL1Q14515 664 aa9.44□□□□□ -0.9
ATG4A-202ENST00000345734 PPP2R5DQ14738 602 aa9.44□□□□□ -0.9
ATG4A-202ENST00000345734 LRRC14Q15048 493 aa9.44□□□□□ -0.9
ATG4A-202ENST00000345734 FAM117BQ6P1L5 589 aa9.44□□□□□ -0.9
ATG4A-202ENST00000345734 CNKSR3Q6P9H4 555 aa9.44□□□□□ -0.9
ATG4A-202ENST00000345734 ARHGAP36Q6ZRI8 547 aa9.44□□□□□ -0.9
ATG4A-202ENST00000345734 RIPOR1Q6ZS17 1223 aa9.44□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms