RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 ARHGAP15Q53QZ3 475 aa10.45□□□□□ -0.74
CCDC88A-202ENST00000336838 ATL1Q8WXF7 558 aa10.45□□□□□ -0.74
CCDC88A-202ENST00000336838 ATF5Q9Y2D1 282 aaPredicted RBP10.45□□□□□ -0.74
CCDC88A-202ENST00000336838 MYH14Q7Z406 1995 aaKnown RBP10.45□□□□□ -0.74
CCDC88A-202ENST00000336838 POU5F1Q01860 360 aaKnown RBP10.45□□□□□ -0.74
CCDC88A-202ENST00000336838 SNX32Q86XE0 403 aa10.45□□□□□ -0.74
CCDC88A-202ENST00000336838 CNTD1Q8N815 330 aa10.45□□□□□ -0.74
CCDC88A-202ENST00000336838 EIF4E1BA6NMX2 242 aaKnown RBP10.45□□□□□ -0.74
CCDC88A-202ENST00000336838 NFKB1P19838 968 aa10.45□□□□□ -0.74
CCDC88A-202ENST00000336838 STAT5AP42229 794 aa10.45□□□□□ -0.74
CCDC88A-202ENST00000336838 SKP1P63208 163 aa10.45□□□□□ -0.74
CCDC88A-202ENST00000336838 ZNF470Q6ECI4 717 aa10.45□□□□□ -0.74
CCDC88A-202ENST00000336838 KIAA0408Q6ZU52 694 aa10.45□□□□□ -0.74
CCDC88A-202ENST00000336838 TAAR1Q96RJ0 339 aa10.45□□□□□ -0.74
CCDC88A-202ENST00000336838 TMEM39BQ9GZU3 492 aa10.45□□□□□ -0.74
CCDC88A-202ENST00000336838 KLHL20Q9Y2M5 609 aa10.45□□□□□ -0.74
CCDC88A-202ENST00000336838 PDE4DIPQ5VU43 2346 aa10.45□□□□□ -0.74
CCDC88A-202ENST00000336838 FUT2Q10981 343 aa10.45□□□□□ -0.74
CCDC88A-202ENST00000336838 BNIP1Q12981 228 aa10.45□□□□□ -0.74
CCDC88A-202ENST00000336838 BLMHQ13867 455 aa10.45□□□□□ -0.74
CCDC88A-202ENST00000336838 ATG4CQ96DT6 458 aa10.45□□□□□ -0.74
CCDC88A-202ENST00000336838 IL12RB1P42701 662 aa10.45□□□□□ -0.74
CCDC88A-202ENST00000336838 FAAP100Q0VG06 881 aa10.45□□□□□ -0.74
CCDC88A-202ENST00000336838 HGSNATQ68CP4 663 aa10.45□□□□□ -0.74
CCDC88A-202ENST00000336838 ZNF549Q6P9A3 640 aa10.45□□□□□ -0.74
CCDC88A-202ENST00000336838 FOXR1Q6PIV2 292 aa10.45□□□□□ -0.74
CCDC88A-202ENST00000336838 SLC25A41Q8N5S1 370 aa10.45□□□□□ -0.74
CCDC88A-202ENST00000336838 GANCQ8TET4 914 aa10.45□□□□□ -0.74
CCDC88A-202ENST00000336838 HSD17B14Q9BPX1 270 aa10.45□□□□□ -0.74
CCDC88A-202ENST00000336838 PDCD2LQ9BRP1 358 aa10.45□□□□□ -0.74
CCDC88A-202ENST00000336838 DEFB129Q9H1M3 183 aa10.45□□□□□ -0.74
CCDC88A-202ENST00000336838 FBXO28Q9NVF7 368 aa10.45□□□□□ -0.74
CCDC88A-202ENST00000336838 PLK4O00444 970 aa10.44□□□□□ -0.74
CCDC88A-202ENST00000336838 EIF2B2P49770 351 aaKnown RBP10.44□□□□□ -0.74
CCDC88A-202ENST00000336838 MZT2BQ6NZ67 158 aa10.44□□□□□ -0.74
CCDC88A-202ENST00000336838 CD101Q93033 1021 aa10.44□□□□□ -0.74
CCDC88A-202ENST00000336838 TCF12Q99081 682 aa10.44□□□□□ -0.74
CCDC88A-202ENST00000336838 PLK2Q9NYY3 685 aa10.44□□□□□ -0.74
CCDC88A-202ENST00000336838 MAGEL2Q9UJ55 1249 aa10.44□□□□□ -0.74
CCDC88A-202ENST00000336838 NRXN3Q9Y4C0 1643 aa10.44□□□□□ -0.74
CCDC88A-202ENST00000336838 KCNJ2P63252 427 aa10.44□□□□□ -0.74
CCDC88A-202ENST00000336838 CLEC10AQ8IUN9 316 aa10.44□□□□□ -0.74
CCDC88A-202ENST00000336838 ENKURQ8TC29 256 aa10.44□□□□□ -0.74
CCDC88A-202ENST00000336838 PPP3R2Q96LZ3 170 aa10.44□□□□□ -0.74
CCDC88A-202ENST00000336838 OSBPL10Q9BXB5 764 aa10.44□□□□□ -0.74
CCDC88A-202ENST00000336838 GPRC5CQ9NQ84 441 aa10.44□□□□□ -0.74
CCDC88A-202ENST00000336838 CATSPERZQ9NTU4 200 aa10.44□□□□□ -0.74
CCDC88A-202ENST00000336838 SLC25A13Q9UJS0 675 aa10.44□□□□□ -0.74
CCDC88A-202ENST00000336838 TNFSF13BQ9Y275 285 aa10.44□□□□□ -0.74
CCDC88A-202ENST00000336838 C6orf222P0C671 652 aaPredicted RBP10.44□□□□□ -0.74
CCDC88A-202ENST00000336838 ZNF12P17014 697 aa10.44□□□□□ -0.74
CCDC88A-202ENST00000336838 CSNK2BP67870 215 aa10.44□□□□□ -0.74
CCDC88A-202ENST00000336838 ITIH5Q86UX2 942 aa10.44□□□□□ -0.74
CCDC88A-202ENST00000336838 FNDC5Q8NAU1 212 aa10.44□□□□□ -0.74
CCDC88A-202ENST00000336838 QRFPRQ96P65 431 aa10.44□□□□□ -0.74
CCDC88A-202ENST00000336838 RAMP2O60895 175 aa10.44□□□□□ -0.74
CCDC88A-202ENST00000336838 POLR2LP62875 67 aaKnown RBP10.44□□□□□ -0.74
CCDC88A-202ENST00000336838 CCDC80Q76M96 950 aa10.44□□□□□ -0.74
CCDC88A-202ENST00000336838 SH3BP5LQ7L8J4 393 aa10.44□□□□□ -0.74
CCDC88A-202ENST00000336838 GJD3Q8N144 294 aa10.44□□□□□ -0.74
CCDC88A-202ENST00000336838 DPP10Q8N608 796 aa10.44□□□□□ -0.74
CCDC88A-202ENST00000336838 ZFP42Q96MM3 310 aa10.44□□□□□ -0.74
CCDC88A-202ENST00000336838 A0A087WZ62 844 aa10.44□□□□□ -0.74
CCDC88A-202ENST00000336838 ALOX15P16050 662 aaPredicted RBP10.44□□□□□ -0.74
CCDC88A-202ENST00000336838 CCR3P51677 355 aa10.44□□□□□ -0.74
CCDC88A-202ENST00000336838 ADIGQ0VDE8 80 aa10.44□□□□□ -0.74
CCDC88A-202ENST00000336838 EARS2Q5JPH6 523 aaKnown RBP10.44□□□□□ -0.74
CCDC88A-202ENST00000336838 SLC44A1Q8WWI5 657 aa10.44□□□□□ -0.74
CCDC88A-202ENST00000336838 WNT8BQ93098 351 aa10.44□□□□□ -0.74
CCDC88A-202ENST00000336838 UROC1Q96N76 676 aa10.44□□□□□ -0.74
CCDC88A-202ENST00000336838 FICDQ9BVA6 458 aa10.44□□□□□ -0.74
CCDC88A-202ENST00000336838 DPY30Q9C005 99 aa10.44□□□□□ -0.74
CCDC88A-202ENST00000336838 SENP6Q9GZR1 1112 aaPredicted RBP10.44□□□□□ -0.74
CCDC88A-202ENST00000336838 DDX43Q9NXZ2 648 aaKnown RBP10.44□□□□□ -0.74
CCDC88A-202ENST00000336838 UBP1Q9NZI7 540 aa10.44□□□□□ -0.74
CCDC88A-202ENST00000336838 SPASTQ9UBP0 616 aa10.44□□□□□ -0.74
CCDC88A-202ENST00000336838 C5orf60A6NFR6 353 aa10.44□□□□□ -0.74
CCDC88A-202ENST00000336838 GUCY1B2O75343 617 aa10.44□□□□□ -0.74
CCDC88A-202ENST00000336838 EPN2O95208 641 aa10.44□□□□□ -0.74
CCDC88A-202ENST00000336838 IL2P60568 153 aa10.44□□□□□ -0.74
CCDC88A-202ENST00000336838 RAB10P61026 200 aa10.44□□□□□ -0.74
CCDC88A-202ENST00000336838 ZNF846Q147U1 533 aa10.44□□□□□ -0.74
CCDC88A-202ENST00000336838 FBXO32Q969P5 355 aa10.44□□□□□ -0.74
CCDC88A-202ENST00000336838 REEP1Q9H902 201 aa10.44□□□□□ -0.74
CCDC88A-202ENST00000336838 CDH9Q9ULB4 789 aa10.44□□□□□ -0.74
CCDC88A-202ENST00000336838 DYRK1BQ9Y463 629 aa10.44□□□□□ -0.74
CCDC88A-202ENST00000336838 TCRBV9S1A1TA0A576 114 aa10.44□□□□□ -0.74
CCDC88A-202ENST00000336838 CABYRO75952 493 aa10.44□□□□□ -0.74
CCDC88A-202ENST00000336838 SHBGP04278 402 aa10.44□□□□□ -0.74
CCDC88A-202ENST00000336838 IL6P05231 212 aa10.44□□□□□ -0.74
CCDC88A-202ENST00000336838 COPZ1P61923 177 aa10.44□□□□□ -0.74
CCDC88A-202ENST00000336838 LRRC74AQ0VAA2 488 aa10.44□□□□□ -0.74
CCDC88A-202ENST00000336838 PTTG2Q9NZH5 202 aa10.44□□□□□ -0.74
CCDC88A-202ENST00000336838 POLLQ9UGP5 575 aa10.44□□□□□ -0.74
CCDC88A-202ENST00000336838 DAPK2Q9UIK4 370 aa10.44□□□□□ -0.74
CCDC88A-202ENST00000336838 NUP62P37198 522 aaPredicted RBP10.43□□□□□ -0.74
CCDC88A-202ENST00000336838 TKTL1P51854 596 aa10.43□□□□□ -0.74
CCDC88A-202ENST00000336838 FMO1Q01740 532 aa10.43□□□□□ -0.74
CCDC88A-202ENST00000336838 C16orf72Q14CZ0 275 aa10.43□□□□□ -0.74
CCDC88A-202ENST00000336838 ZACNQ401N2 412 aa10.43□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms