RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 BTN3A2P78410 334 aa14.49□□□□□ -0.09
COL7A1-201ENST00000328333 FAM98CQ17RN3 349 aaKnown RBP14.49□□□□□ -0.09
COL7A1-201ENST00000328333 DNAJB7Q7Z6W7 309 aaPredicted RBP14.49□□□□□ -0.09
COL7A1-201ENST00000328333 MCOLN3Q8TDD5 553 aa14.49□□□□□ -0.09
COL7A1-201ENST00000328333 FAM172AQ8WUF8 416 aa14.49□□□□□ -0.09
COL7A1-201ENST00000328333 MID1IP1Q9NPA3 183 aa14.49□□□□□ -0.09
COL7A1-201ENST00000328333 PEX16Q9Y5Y5 336 aa14.49□□□□□ -0.09
COL7A1-201ENST00000328333 HOXD10P28358 340 aa14.49□□□□□ -0.09
COL7A1-201ENST00000328333 DSG3P32926 999 aa14.49□□□□□ -0.09
COL7A1-201ENST00000328333 GLRBP48167 497 aa14.49□□□□□ -0.09
COL7A1-201ENST00000328333 MAGEE2Q8TD90 523 aaPredicted RBP14.49□□□□□ -0.09
COL7A1-201ENST00000328333 CKAP2Q8WWK9 683 aa14.49□□□□□ -0.09
COL7A1-201ENST00000328333 GJB4Q9NTQ9 266 aa14.49□□□□□ -0.09
COL7A1-201ENST00000328333 DISP1Q96F81 1524 aa14.49□□□□□ -0.09
COL7A1-201ENST00000328333 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP14.48□□□□□ -0.09
COL7A1-201ENST00000328333 GRAP2O75791 330 aa14.48□□□□□ -0.09
COL7A1-201ENST00000328333 APOL3O95236 402 aa14.48□□□□□ -0.09
COL7A1-201ENST00000328333 PGK1P00558 417 aa14.48□□□□□ -0.09
COL7A1-201ENST00000328333 NUDT17P0C025 328 aa14.48□□□□□ -0.09
COL7A1-201ENST00000328333 PRKAR2AP13861 404 aaKnown RBP14.48□□□□□ -0.09
COL7A1-201ENST00000328333 TAF6P49848 677 aa14.48□□□□□ -0.09
COL7A1-201ENST00000328333 ZNF177Q13360 481 aaPredicted RBP14.48□□□□□ -0.09
COL7A1-201ENST00000328333 ZC2HC1CQ53FD0 456 aaPredicted RBP14.48□□□□□ -0.09
COL7A1-201ENST00000328333 SMIM5Q71RC9 77 aa14.48□□□□□ -0.09
COL7A1-201ENST00000328333 MCFD2Q8NI22 146 aa14.48□□□□□ -0.09
COL7A1-201ENST00000328333 ATL1Q8WXF7 558 aa14.48□□□□□ -0.09
COL7A1-201ENST00000328333 CCDC3Q9BQI4 270 aa14.48□□□□□ -0.09
COL7A1-201ENST00000328333 BCL2L14Q9BZR8 327 aa14.48□□□□□ -0.09
COL7A1-201ENST00000328333 GNPTGQ9UJJ9 305 aa14.48□□□□□ -0.09
COL7A1-201ENST00000328333 ENTPD4Q9Y227 616 aa14.48□□□□□ -0.09
COL7A1-201ENST00000328333 RRN3P2A6NIE6 340 aa14.48□□□□□ -0.09
COL7A1-201ENST00000328333 CBX5P45973 191 aa14.48□□□□□ -0.09
COL7A1-201ENST00000328333 ARHGAP15Q53QZ3 475 aa14.48□□□□□ -0.09
COL7A1-201ENST00000328333 RPTNQ6XPR3 784 aa14.48□□□□□ -0.09
COL7A1-201ENST00000328333 SNX32Q86XE0 403 aa14.48□□□□□ -0.09
COL7A1-201ENST00000328333 ZNF540Q8NDQ6 660 aa14.48□□□□□ -0.09
COL7A1-201ENST00000328333 AGAP11Q8TF27 550 aa14.48□□□□□ -0.09
COL7A1-201ENST00000328333 F5H6K3 240 aa14.48□□□□□ -0.09
COL7A1-201ENST00000328333 C2CD2LO14523 706 aa14.48□□□□□ -0.09
COL7A1-201ENST00000328333 PRRG1O14668 218 aa14.48□□□□□ -0.09
COL7A1-201ENST00000328333 ACOT2P49753 483 aa14.48□□□□□ -0.09
COL7A1-201ENST00000328333 KLRC3Q07444 240 aa14.48□□□□□ -0.09
COL7A1-201ENST00000328333 PPIL2Q13356 520 aa14.48□□□□□ -0.09
COL7A1-201ENST00000328333 TDRD10Q5VZ19 366 aaKnown RBP14.48□□□□□ -0.09
COL7A1-201ENST00000328333 KBTBD4Q9NVX7 518 aa14.48□□□□□ -0.09
COL7A1-201ENST00000328333 DDIT4Q9NX09 232 aa14.48□□□□□ -0.09
COL7A1-201ENST00000328333 TELO2Q9Y4R8 837 aa14.48□□□□□ -0.09
COL7A1-201ENST00000328333 STAU1O95793 577 aaKnown RBP14.48□□□□□ -0.09
COL7A1-201ENST00000328333 FGRP09769 529 aa14.48□□□□□ -0.09
COL7A1-201ENST00000328333 NR2F6P10588 404 aa14.48□□□□□ -0.09
COL7A1-201ENST00000328333 ACTL9Q8TC94 416 aa14.48□□□□□ -0.09
COL7A1-201ENST00000328333 HM13Q8TCT9 377 aa14.48□□□□□ -0.09
COL7A1-201ENST00000328333 IGDCC4Q8TDY8 1250 aa14.48□□□□□ -0.09
COL7A1-201ENST00000328333 ADAM33Q9BZ11 813 aa14.48□□□□□ -0.09
COL7A1-201ENST00000328333 GGA3Q9NZ52 723 aa14.48□□□□□ -0.09
COL7A1-201ENST00000328333 SLC12A4Q9UP95 1085 aa14.48□□□□□ -0.09
COL7A1-201ENST00000328333 PCDHA3Q9Y5H8 950 aa14.48□□□□□ -0.09
COL7A1-201ENST00000328333 FOXN1O15353 648 aa14.48□□□□□ -0.09
COL7A1-201ENST00000328333 TADA2AO75478 443 aa14.48□□□□□ -0.09
COL7A1-201ENST00000328333 MAPTP10636 758 aaKnown RBP14.48□□□□□ -0.09
COL7A1-201ENST00000328333 R3HCC1LQ7Z5L2 792 aaKnown RBP14.48□□□□□ -0.09
COL7A1-201ENST00000328333 C11orf74Q86VG3 221 aa14.48□□□□□ -0.09
COL7A1-201ENST00000328333 C15orf40Q8WUR7 153 aa14.48□□□□□ -0.09
COL7A1-201ENST00000328333 ZC3H10Q96K80 434 aaKnown RBP14.48□□□□□ -0.09
COL7A1-201ENST00000328333 TMEM121Q9BTD3 319 aa14.48□□□□□ -0.09
COL7A1-201ENST00000328333 PNMA8BQ9ULN7 279 aaPredicted RBP14.48□□□□□ -0.09
COL7A1-201ENST00000328333 CPS1P31327 1500 aa14.48□□□□□ -0.09
COL7A1-201ENST00000328333 IDH2P48735 452 aaKnown RBP14.48□□□□□ -0.09
COL7A1-201ENST00000328333 ERVK-24P63145 666 aa14.48□□□□□ -0.09
COL7A1-201ENST00000328333 NOL11Q9H8H0 719 aaKnown RBP14.48□□□□□ -0.09
COL7A1-201ENST00000328333 CLIC5Q9NZA1 410 aa14.48□□□□□ -0.09
COL7A1-201ENST00000328333 MED11Q9P086 117 aa14.48□□□□□ -0.09
COL7A1-201ENST00000328333 TRPC4Q9UBN4 977 aa14.48□□□□□ -0.09
COL7A1-201ENST00000328333 MORF4L1Q9UBU8 362 aa14.48□□□□□ -0.09
COL7A1-201ENST00000328333 AP4E1Q9UPM8 1137 aa14.48□□□□□ -0.09
COL7A1-201ENST00000328333 H7C4K7 107 aa14.48□□□□□ -0.09
COL7A1-201ENST00000328333 CBWD2Q8IUF1 395 aa14.48□□□□□ -0.09
COL7A1-201ENST00000328333 FAM129BQ96TA1 746 aa14.48□□□□□ -0.09
COL7A1-201ENST00000328333 RTKNQ9BST9 563 aa14.48□□□□□ -0.09
COL7A1-201ENST00000328333 CCDC167Q9P0B6 97 aa14.48□□□□□ -0.09
COL7A1-201ENST00000328333 UBQLN1Q9UMX0 589 aaKnown RBP14.48□□□□□ -0.09
COL7A1-201ENST00000328333 S100A3P33764 101 aa14.48□□□□□ -0.09
COL7A1-201ENST00000328333 GRIA3P42263 894 aa14.48□□□□□ -0.09
COL7A1-201ENST00000328333 PACS1Q6VY07 963 aa14.48□□□□□ -0.09
COL7A1-201ENST00000328333 KATNAL2Q8IYT4 538 aa14.48□□□□□ -0.09
COL7A1-201ENST00000328333 OFCC1Q8IZS5 231 aa14.48□□□□□ -0.09
COL7A1-201ENST00000328333 ZNF557Q8N988 423 aaPredicted RBP14.48□□□□□ -0.09
COL7A1-201ENST00000328333 FAM118BQ9BPY3 351 aa14.48□□□□□ -0.09
COL7A1-201ENST00000328333 TDRD1Q9BXT4 1180 aaKnown RBP14.48□□□□□ -0.09
COL7A1-201ENST00000328333 MAGEL2Q9UJ55 1249 aa14.48□□□□□ -0.09
COL7A1-201ENST00000328333 SPEF2Q9C093 1822 aa14.47□□□□□ -0.09
COL7A1-201ENST00000328333 SNRPB2P08579 225 aaKnown RBP14.47□□□□□ -0.09
COL7A1-201ENST00000328333 GPSM2P81274 684 aa14.47□□□□□ -0.09
COL7A1-201ENST00000328333 KBTBD2Q8IY47 623 aa14.47□□□□□ -0.09
COL7A1-201ENST00000328333 TBC1D10AQ9BXI6 508 aa14.47□□□□□ -0.09
COL7A1-201ENST00000328333 ITGAVP06756 1048 aa14.47□□□□□ -0.09
COL7A1-201ENST00000328333 PDIA6Q15084 440 aa14.47□□□□□ -0.09
COL7A1-201ENST00000328333 GPC6Q9Y625 555 aaPredicted RBP14.47□□□□□ -0.09
COL7A1-201ENST00000328333 KIAA0100Q14667 2235 aaKnown RBP14.47□□□□□ -0.09
COL7A1-201ENST00000328333 APOC4-APOC2K7ER74 178 aa14.47□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms