RNA–Protein interactions for RNA: ENST00000269137.11

SS18-201, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SS18, Length 1,836 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-201ENST00000269137 OR2W6PQ8NHA6 318 aa14.41□□□□□ -0.1
SS18-201ENST00000269137 TCEAL4Q96EI5 215 aa14.41□□□□□ -0.1
SS18-201ENST00000269137 SLC28A3Q9HAS3 691 aa14.41□□□□□ -0.1
SS18-201ENST00000269137 RSPH14Q9UHP6 348 aa14.41□□□□□ -0.1
SS18-201ENST00000269137 TBC1D30Q9Y2I9 924 aa14.41□□□□□ -0.1
SS18-201ENST00000269137 ATG2AQ2TAZ0 1938 aa14.41□□□□□ -0.1
SS18-201ENST00000269137 ILVBLA1L0T0 632 aa14.41□□□□□ -0.1
SS18-201ENST00000269137 SUN1O94901 812 aa14.41□□□□□ -0.1
SS18-201ENST00000269137 SHBGP04278 402 aa14.41□□□□□ -0.1
SS18-201ENST00000269137 OAS2P29728 719 aaKnown RBP14.41□□□□□ -0.1
SS18-201ENST00000269137 BMP8BP34820 402 aa14.41□□□□□ -0.1
SS18-201ENST00000269137 LMAN1P49257 510 aa14.41□□□□□ -0.1
SS18-201ENST00000269137 RENBPP51606 427 aa14.41□□□□□ -0.1
SS18-201ENST00000269137 TNK2Q07912 1038 aa14.41□□□□□ -0.1
SS18-201ENST00000269137 IL10RBQ08334 325 aa14.41□□□□□ -0.1
SS18-201ENST00000269137 BBS9Q3SYG4 887 aa14.41□□□□□ -0.1
SS18-201ENST00000269137 CCDC38Q502W7 563 aa14.41□□□□□ -0.1
SS18-201ENST00000269137 DNAJC21Q5F1R6 531 aaKnown RBP14.41□□□□□ -0.1
SS18-201ENST00000269137 PRSS36Q5K4E3 855 aa14.41□□□□□ -0.1
SS18-201ENST00000269137 SYCP2LQ5T4T6 812 aa14.41□□□□□ -0.1
SS18-201ENST00000269137 C6orf118Q5T5N4 469 aa14.41□□□□□ -0.1
SS18-201ENST00000269137 GPR158Q5T848 1215 aa14.41□□□□□ -0.1
SS18-201ENST00000269137 ZNF534Q76KX8 674 aa14.41□□□□□ -0.1
SS18-201ENST00000269137 SETD3Q86TU7 594 aaPredicted RBP14.41□□□□□ -0.1
SS18-201ENST00000269137 CMTM8Q8IZV2 173 aa14.41□□□□□ -0.1
SS18-201ENST00000269137 CPXM2Q8N436 756 aa14.41□□□□□ -0.1
SS18-201ENST00000269137 PDCD7Q8N8D1 485 aaKnown RBP14.41□□□□□ -0.1
SS18-201ENST00000269137 PYROXD1Q8WU10 500 aa14.41□□□□□ -0.1
SS18-201ENST00000269137 LRRC39Q96DD0 335 aa14.41□□□□□ -0.1
SS18-201ENST00000269137 PPP1R2P1Q96PQ5 205 aa14.41□□□□□ -0.1
SS18-201ENST00000269137 GORASP1Q9BQQ3 440 aa14.41□□□□□ -0.1
SS18-201ENST00000269137 ROPN1BQ9BZX4 212 aaPredicted RBP14.41□□□□□ -0.1
SS18-201ENST00000269137 ROPN1Q9HAT0 212 aaPredicted RBP14.41□□□□□ -0.1
SS18-201ENST00000269137 CFAP97Q9P2B7 532 aa14.41□□□□□ -0.1
SS18-201ENST00000269137 SH3BP1Q9Y3L3 701 aa14.41□□□□□ -0.1
SS18-201ENST00000269137 TEX264Q9Y6I9 313 aa14.41□□□□□ -0.1
SS18-201ENST00000269137 LAMA3Q16787 3333 aa14.4□□□□□ -0.1
SS18-201ENST00000269137 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP14.4□□□□□ -0.1
SS18-201ENST00000269137 CCDC195A0A1B0GUA6 201 aa14.4□□□□□ -0.1
SS18-201ENST00000269137 GOLGA6L10A6NI86 522 aa14.4□□□□□ -0.1
SS18-201ENST00000269137 GOLGA8KD6RF30 607 aa14.4□□□□□ -0.1
SS18-201ENST00000269137 LEFTY2O00292 366 aa14.4□□□□□ -0.1
SS18-201ENST00000269137 ZNF197O14709 1029 aa14.4□□□□□ -0.1
SS18-201ENST00000269137 TRDMT1O14717 391 aaKnown RBP14.4□□□□□ -0.1
SS18-201ENST00000269137 TCEA3O75764 348 aa14.4□□□□□ -0.1
SS18-201ENST00000269137 AP2A1O95782 977 aa14.4□□□□□ -0.1
SS18-201ENST00000269137 MYZAPP0CAP1 466 aa14.4□□□□□ -0.1
SS18-201ENST00000269137 NFKB1P19838 968 aa14.4□□□□□ -0.1
SS18-201ENST00000269137 GNA12Q03113 381 aa14.4□□□□□ -0.1
SS18-201ENST00000269137 ZNF177Q13360 481 aaPredicted RBP14.4□□□□□ -0.1
SS18-201ENST00000269137 TEAD2Q15562 447 aa14.4□□□□□ -0.1
SS18-201ENST00000269137 SLC5A9Q2M3M2 681 aa14.4□□□□□ -0.1
SS18-201ENST00000269137 KCTD11Q693B1 232 aa14.4□□□□□ -0.1
SS18-201ENST00000269137 LRRC8BQ6P9F7 803 aa14.4□□□□□ -0.1
SS18-201ENST00000269137 TEX26Q8N6G2 289 aa14.4□□□□□ -0.1
SS18-201ENST00000269137 HJURPQ8NCD3 748 aaPredicted RBP14.4□□□□□ -0.1
SS18-201ENST00000269137 ARHGEF2Q92974 986 aaKnown RBP14.4□□□□□ -0.1
SS18-201ENST00000269137 ZBTB9Q96C00 473 aa14.4□□□□□ -0.1
SS18-201ENST00000269137 ZNF419Q96HQ0 510 aaPredicted RBP14.4□□□□□ -0.1
SS18-201ENST00000269137 FCRL5Q96RD9 977 aa14.4□□□□□ -0.1
SS18-201ENST00000269137 CDCA3Q99618 268 aaPredicted RBP14.4□□□□□ -0.1
SS18-201ENST00000269137 WDR83Q9BRX9 315 aaKnown RBP14.4□□□□□ -0.1
SS18-201ENST00000269137 SP110Q9HB58 689 aa14.4□□□□□ -0.1
SS18-201ENST00000269137 GLOD4Q9HC38 313 aa14.4□□□□□ -0.1
SS18-201ENST00000269137 LRRC4CQ9HCJ2 640 aa14.4□□□□□ -0.1
SS18-201ENST00000269137 RBM22Q9NW64 420 aaKnown RBP eCLIP14.4□□□□□ -0.13e-7■■■■■ 29.6
SS18-201ENST00000269137 HELZP42694 1942 aaKnown RBP14.4□□□□□ -0.1
SS18-201ENST00000269137 E2F8A0AVK6 867 aa14.39□□□□□ -0.11
SS18-201ENST00000269137 J3KR12 359 aa14.39□□□□□ -0.11
SS18-201ENST00000269137 PSMD3O43242 534 aa14.39□□□□□ -0.11
SS18-201ENST00000269137 TSPAN3O60637 253 aa14.39□□□□□ -0.11
SS18-201ENST00000269137 PRAMEF11O60813 436 aa14.39□□□□□ -0.11
SS18-201ENST00000269137 BANF1O75531 89 aa14.39□□□□□ -0.11
SS18-201ENST00000269137 ACVRL1P37023 503 aa14.39□□□□□ -0.11
SS18-201ENST00000269137 AVPR1AP37288 418 aa14.39□□□□□ -0.11
SS18-201ENST00000269137 SGSHP51688 502 aa14.39□□□□□ -0.11
SS18-201ENST00000269137 KCNC3Q14003 757 aa14.39□□□□□ -0.11
SS18-201ENST00000269137 PRPSAP1Q14558 356 aa14.39□□□□□ -0.11
SS18-201ENST00000269137 ZNF783Q6ZMS7 281 aa14.39□□□□□ -0.11
SS18-201ENST00000269137 ATP11CQ8NB49 1132 aa14.39□□□□□ -0.11
SS18-201ENST00000269137 GDPD5Q8WTR4 605 aa14.39□□□□□ -0.11
SS18-201ENST00000269137 ARL8AQ96BM9 186 aa14.39□□□□□ -0.11
SS18-201ENST00000269137 TMA16Q96EY4 203 aaKnown RBP14.39□□□□□ -0.11
SS18-201ENST00000269137 ZNF599Q96NL3 588 aa14.39□□□□□ -0.11
SS18-201ENST00000269137 TMBIM4Q9HC24 238 aa14.39□□□□□ -0.11
SS18-201ENST00000269137 A0A087WUV0 522 aaPredicted RBP14.38□□□□□ -0.11
SS18-201ENST00000269137 GOLGA6CA6NDK9 693 aa14.38□□□□□ -0.11
SS18-201ENST00000269137 EPOPA6NHQ4 379 aa14.38□□□□□ -0.11
SS18-201ENST00000269137 AVILO75366 819 aa14.38□□□□□ -0.11
SS18-201ENST00000269137 GOLGA6DP0CG33 693 aa14.38□□□□□ -0.11
SS18-201ENST00000269137 ETFBP38117 255 aa14.38□□□□□ -0.11
SS18-201ENST00000269137 ELK3P41970 407 aa14.38□□□□□ -0.11
SS18-201ENST00000269137 NRIP1P48552 1158 aa14.38□□□□□ -0.11
SS18-201ENST00000269137 STAT4Q14765 748 aa14.38□□□□□ -0.11
SS18-201ENST00000269137 HP1BP3Q5SSJ5 553 aaPredicted RBP14.38□□□□□ -0.11
SS18-201ENST00000269137 MPP7Q5T2T1 576 aa14.38□□□□□ -0.11
SS18-201ENST00000269137 ZNF697Q5TEC3 545 aa14.38□□□□□ -0.11
SS18-201ENST00000269137 MARC1Q5VT66 337 aa14.38□□□□□ -0.11
SS18-201ENST00000269137 GRASPQ7Z6J2 395 aaPredicted RBP14.38□□□□□ -0.11
SS18-201ENST00000269137 ANKMY2Q8IV38 441 aa14.38□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms