RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 CMASQ8NFW8 434 aaPredicted RBP4.58□□□□□ -1.68
CD44-239ENST00000639002 DEPTORQ8TB45 409 aa4.58□□□□□ -1.68
CD44-239ENST00000639002 ADAMTS14Q8WXS8 1223 aa4.58□□□□□ -1.68
CD44-239ENST00000639002 PPP1R10Q96QC0 940 aaKnown RBP4.58□□□□□ -1.68
CD44-239ENST00000639002 MYD88Q99836 296 aa4.58□□□□□ -1.68
CD44-239ENST00000639002 B3GNT4Q9C0J1 378 aa4.58□□□□□ -1.68
CD44-239ENST00000639002 RNF146Q9NTX7 359 aa4.58□□□□□ -1.68
CD44-239ENST00000639002 NCKIPSDQ9NZQ3 722 aa4.58□□□□□ -1.68
CD44-239ENST00000639002 ZNF112Q9UJU3 913 aa4.58□□□□□ -1.68
CD44-239ENST00000639002 PCDHA10Q9Y5I2 948 aa4.58□□□□□ -1.68
CD44-239ENST00000639002 ACOT8O14734 319 aa4.57□□□□□ -1.68
CD44-239ENST00000639002 TNFRSF6BO95407 300 aa4.57□□□□□ -1.68
CD44-239ENST00000639002 CHRNA5P30532 468 aa4.57□□□□□ -1.68
CD44-239ENST00000639002 HOXD3P31249 432 aaPredicted RBP4.57□□□□□ -1.68
CD44-239ENST00000639002 ENTPD1P49961 510 aa4.57□□□□□ -1.68
CD44-239ENST00000639002 NADSYN1Q6IA69 706 aa4.57□□□□□ -1.68
CD44-239ENST00000639002 TMEM71Q6P5X7 295 aa4.57□□□□□ -1.68
CD44-239ENST00000639002 SLC30A9Q6PML9 568 aa4.57□□□□□ -1.68
CD44-239ENST00000639002 FAM83HQ6ZRV2 1179 aaPredicted RBP4.57□□□□□ -1.68
CD44-239ENST00000639002 Q6ZSV7 163 aa4.57□□□□□ -1.68
CD44-239ENST00000639002 ZNF367Q7RTV3 350 aa4.57□□□□□ -1.68
CD44-239ENST00000639002 SRLQ86TD4 932 aa4.57□□□□□ -1.68
CD44-239ENST00000639002 CCDC25Q86WR0 208 aa4.57□□□□□ -1.68
CD44-239ENST00000639002 SYTL1Q8IYJ3 562 aa4.57□□□□□ -1.68
CD44-239ENST00000639002 HDHD5Q9BXW7 423 aa4.57□□□□□ -1.68
CD44-239ENST00000639002 ARL15Q9NXU5 204 aa4.57□□□□□ -1.68
CD44-239ENST00000639002 PLEKHB1Q9UF11 243 aaPredicted RBP4.57□□□□□ -1.68
CD44-239ENST00000639002 CDC23Q9UJX2 597 aa4.57□□□□□ -1.68
CD44-239ENST00000639002 MBD3L5A6NJ08 208 aaPredicted RBP4.56□□□□□ -1.68
CD44-239ENST00000639002 HEXIM1O94992 359 aaKnown RBP4.56□□□□□ -1.68
CD44-239ENST00000639002 LARGE1O95461 756 aa4.56□□□□□ -1.68
CD44-239ENST00000639002 PPP1R3DO95685 299 aa4.56□□□□□ -1.68
CD44-239ENST00000639002 GYS1P13807 737 aa4.56□□□□□ -1.68
CD44-239ENST00000639002 PRPH2P23942 346 aa4.56□□□□□ -1.68
CD44-239ENST00000639002 KLRC2P26717 231 aa4.56□□□□□ -1.68
CD44-239ENST00000639002 STAT1P42224 750 aa4.56□□□□□ -1.68
CD44-239ENST00000639002 RCAN1P53805 252 aa4.56□□□□□ -1.68
CD44-239ENST00000639002 ZP1P60852 638 aa4.56□□□□□ -1.68
CD44-239ENST00000639002 RNASELQ05823 741 aaKnown RBP4.56□□□□□ -1.68
CD44-239ENST00000639002 HYAL1Q12794 435 aa4.56□□□□□ -1.68
CD44-239ENST00000639002 SPARCL1Q14515 664 aa4.56□□□□□ -1.68
CD44-239ENST00000639002 PLK5Q496M5 336 aa4.56□□□□□ -1.68
CD44-239ENST00000639002 FNBP1LQ5T0N5 605 aa4.56□□□□□ -1.68
CD44-239ENST00000639002 VWA5B1Q5TIE3 1220 aa4.56□□□□□ -1.68
CD44-239ENST00000639002 MORC1Q86VD1 984 aa4.56□□□□□ -1.68
CD44-239ENST00000639002 HMGB4Q8WW32 186 aa4.56□□□□□ -1.68
CD44-239ENST00000639002 RSC1A1Q92681 617 aa4.56□□□□□ -1.68
CD44-239ENST00000639002 ARNT2Q9HBZ2 717 aa4.56□□□□□ -1.68
CD44-239ENST00000639002 Q9N2J8 555 aa4.56□□□□□ -1.68
CD44-239ENST00000639002 RCE1Q9Y256 329 aa4.56□□□□□ -1.68
CD44-239ENST00000639002 DOCK7Q96N67 2140 aa4.55□□□□□ -1.68
CD44-239ENST00000639002 CYP21A2P08686 494 aa4.55□□□□□ -1.68
CD44-239ENST00000639002 NBPF7P0C2Y1 421 aaPredicted RBP4.55□□□□□ -1.68
CD44-239ENST00000639002 PPM1AP35813 382 aa4.55□□□□□ -1.68
CD44-239ENST00000639002 PTK2BQ14289 1009 aa4.55□□□□□ -1.68
CD44-239ENST00000639002 MTFR2Q6P444 385 aa4.55□□□□□ -1.68
CD44-239ENST00000639002 PRSS57Q6UWY2 283 aa4.55□□□□□ -1.68
CD44-239ENST00000639002 ANKS1BQ7Z6G8 1248 aa4.55□□□□□ -1.68
CD44-239ENST00000639002 FAM71BQ8TC56 605 aa4.55□□□□□ -1.68
CD44-239ENST00000639002 TMEM41AQ96HV5 264 aa4.55□□□□□ -1.68
CD44-239ENST00000639002 TMEM120AQ9BXJ8 343 aa4.55□□□□□ -1.68
CD44-239ENST00000639002 SEZ6LQ9BYH1 1024 aa4.55□□□□□ -1.68
CD44-239ENST00000639002 HIPK3Q9H422 1215 aa4.55□□□□□ -1.68
CD44-239ENST00000639002 OBP2BQ9NPH6 170 aa4.55□□□□□ -1.68
CD44-239ENST00000639002 SLC22A11Q9NSA0 550 aa4.55□□□□□ -1.68
CD44-239ENST00000639002 TMEM248Q9NWD8 314 aa4.55□□□□□ -1.68
CD44-239ENST00000639002 GEMIN8Q9NWZ8 242 aaKnown RBP4.55□□□□□ -1.68
CD44-239ENST00000639002 ZDHHC7Q9NXF8 308 aa4.55□□□□□ -1.68
CD44-239ENST00000639002 RAI2Q9Y5P3 530 aa4.55□□□□□ -1.68
CD44-239ENST00000639002 STMND1H3BQB6 276 aa4.54□□□□□ -1.68
CD44-239ENST00000639002 HOXB9P17482 250 aaPredicted RBP4.54□□□□□ -1.68
CD44-239ENST00000639002 CDK7P50613 346 aa4.54□□□□□ -1.68
CD44-239ENST00000639002 HNF4GQ14541 408 aa4.54□□□□□ -1.68
CD44-239ENST00000639002 PRAMEF19Q5SWL8 479 aa4.54□□□□□ -1.68
CD44-239ENST00000639002 GATAD2AQ86YP4 633 aa4.54□□□□□ -1.68
CD44-239ENST00000639002 ENDOVQ8N8Q3 282 aaKnown RBP4.54□□□□□ -1.68
CD44-239ENST00000639002 LRRC57Q8N9N7 239 aa4.54□□□□□ -1.68
CD44-239ENST00000639002 NEXN-AS1Q8NBZ9 246 aa4.54□□□□□ -1.68
CD44-239ENST00000639002 APOLD1Q96LR9 279 aa4.54□□□□□ -1.68
CD44-239ENST00000639002 SLITRK1Q96PX8 696 aa4.54□□□□□ -1.68
CD44-239ENST00000639002 RMI1Q9H9A7 625 aa4.54□□□□□ -1.68
CD44-239ENST00000639002 LIN7CQ9NUP9 197 aaKnown RBP4.54□□□□□ -1.68
CD44-239ENST00000639002 FZD10Q9ULW2 581 aa4.54□□□□□ -1.68
CD44-239ENST00000639002 SLC4A4Q9Y6R1 1079 aa4.54□□□□□ -1.68
CD44-239ENST00000639002 SCN5AQ14524 2016 aa4.54□□□□□ -1.68
CD44-239ENST00000639002 GOLGA6L3A6NEY3 463 aa4.53□□□□□ -1.68
CD44-239ENST00000639002 LGALS16A8MUM7 142 aa4.53□□□□□ -1.68
CD44-239ENST00000639002 CAND2O75155 1236 aa4.53□□□□□ -1.68
CD44-239ENST00000639002 GLUD1P00367 558 aa4.53□□□□□ -1.68
CD44-239ENST00000639002 PPP3CCP48454 512 aa4.53□□□□□ -1.68
CD44-239ENST00000639002 GLUD2P49448 558 aa4.53□□□□□ -1.68
CD44-239ENST00000639002 PNLIPRP1P54315 467 aa4.53□□□□□ -1.68
CD44-239ENST00000639002 TMPRSS3P57727 454 aa4.53□□□□□ -1.68
CD44-239ENST00000639002 PICALMQ13492 652 aa4.53□□□□□ -1.68
CD44-239ENST00000639002 SHBQ15464 509 aa4.53□□□□□ -1.68
CD44-239ENST00000639002 ZNF628Q5EBL2 1059 aa4.53□□□□□ -1.68
CD44-239ENST00000639002 DNTTIP2Q5QJE6 756 aaKnown RBP4.53□□□□□ -1.68
CD44-239ENST00000639002 LCE1EQ5T753 118 aa4.53□□□□□ -1.68
CD44-239ENST00000639002 OTUD1Q5VV17 481 aaPredicted RBP4.53□□□□□ -1.68
CD44-239ENST00000639002 RNF144BQ7Z419 303 aa4.53□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms