RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 M0QYT0 321 aa3.2□□□□□ -1.9
SCN1A-208ENST00000625916 DHHO43323 396 aa3.2□□□□□ -1.9
SCN1A-208ENST00000625916 IGFBP2P18065 325 aa3.2□□□□□ -1.9
SCN1A-208ENST00000625916 AVPR1AP37288 418 aa3.2□□□□□ -1.9
SCN1A-208ENST00000625916 PIK3CBP42338 1070 aa3.2□□□□□ -1.9
SCN1A-208ENST00000625916 AMTP48728 403 aa3.2□□□□□ -1.9
SCN1A-208ENST00000625916 ADPRHP54922 357 aa3.2□□□□□ -1.9
SCN1A-208ENST00000625916 KRTAP10-12P60413 245 aa3.2□□□□□ -1.9
SCN1A-208ENST00000625916 TUBA1BP68363 451 aa3.2□□□□□ -1.9
SCN1A-208ENST00000625916 ACSM2AQ08AH3 577 aa3.2□□□□□ -1.9
SCN1A-208ENST00000625916 MAPKAPK3Q16644 382 aa3.2□□□□□ -1.9
SCN1A-208ENST00000625916 GFOD2Q3B7J2 385 aa3.2□□□□□ -1.9
SCN1A-208ENST00000625916 KRT71Q3SY84 523 aa3.2□□□□□ -1.9
SCN1A-208ENST00000625916 CEP85LQ5SZL2 805 aa3.2□□□□□ -1.9
SCN1A-208ENST00000625916 PALB2Q86YC2 1186 aa3.2□□□□□ -1.9
SCN1A-208ENST00000625916 ACTR5Q9H9F9 607 aaPredicted RBP3.2□□□□□ -1.9
SCN1A-208ENST00000625916 RGL1Q9NZL6 768 aa3.2□□□□□ -1.9
SCN1A-208ENST00000625916 IL36RNQ9UBH0 155 aa3.2□□□□□ -1.9
SCN1A-208ENST00000625916 SLC12A4Q9UP95 1085 aa3.2□□□□□ -1.9
SCN1A-208ENST00000625916 MAN2B2Q9Y2E5 1009 aa3.2□□□□□ -1.9
SCN1A-208ENST00000625916 RAP2CQ9Y3L5 183 aa3.2□□□□□ -1.9
SCN1A-208ENST00000625916 A0A1W2PPC4 97 aa3.19□□□□□ -1.9
SCN1A-208ENST00000625916 LINC01553A4QN01 128 aa3.19□□□□□ -1.9
SCN1A-208ENST00000625916 APOL1O14791 398 aa3.19□□□□□ -1.9
SCN1A-208ENST00000625916 CER1O95813 267 aa3.19□□□□□ -1.9
SCN1A-208ENST00000625916 TSHRP16473 764 aa3.19□□□□□ -1.9
SCN1A-208ENST00000625916 GRK5P34947 590 aa3.19□□□□□ -1.9
SCN1A-208ENST00000625916 RPL15P61313 204 aaKnown RBP3.19□□□□□ -1.9
SCN1A-208ENST00000625916 GRSF1Q12849 480 aaKnown RBP eCLIP3.19□□□□□ -1.9
SCN1A-208ENST00000625916 TRAF3Q13114 568 aa3.19□□□□□ -1.9
SCN1A-208ENST00000625916 HEPHL1Q6MZM0 1159 aa3.19□□□□□ -1.9
SCN1A-208ENST00000625916 TMEM71Q6P5X7 295 aa3.19□□□□□ -1.9
SCN1A-208ENST00000625916 ZNF449Q6P9G9 518 aa3.19□□□□□ -1.9
SCN1A-208ENST00000625916 MEX3BQ6ZN04 569 aaKnown RBP3.19□□□□□ -1.9
SCN1A-208ENST00000625916 MYO1HQ8N1T3 1032 aa3.19□□□□□ -1.9
SCN1A-208ENST00000625916 TXLNBQ8N3L3 684 aa3.19□□□□□ -1.9
SCN1A-208ENST00000625916 HORMAD2Q8N7B1 307 aa3.19□□□□□ -1.9
SCN1A-208ENST00000625916 RNF152Q8N8N0 203 aa3.19□□□□□ -1.9
SCN1A-208ENST00000625916 MIGA1Q8NAN2 632 aa3.19□□□□□ -1.9
SCN1A-208ENST00000625916 GLIS1Q8NBF1 620 aa3.19□□□□□ -1.9
SCN1A-208ENST00000625916 MCRS1Q96EZ8 462 aa3.19□□□□□ -1.9
SCN1A-208ENST00000625916 REXO5Q96IC2 774 aaKnown RBP3.19□□□□□ -1.9
SCN1A-208ENST00000625916 EIF2AQ9BY44 585 aaKnown RBP3.19□□□□□ -1.9
SCN1A-208ENST00000625916 KLHL31Q9H511 634 aa3.19□□□□□ -1.9
SCN1A-208ENST00000625916 EPS8L2Q9H6S3 715 aa3.19□□□□□ -1.9
SCN1A-208ENST00000625916 HELLSQ9NRZ9 838 aa3.19□□□□□ -1.9
SCN1A-208ENST00000625916 DONSONQ9NYP3 566 aa3.19□□□□□ -1.9
SCN1A-208ENST00000625916 IGSF9Q9P2J2 1179 aa3.19□□□□□ -1.9
SCN1A-208ENST00000625916 TCEAL9Q9UHQ7 104 aa3.19□□□□□ -1.9
SCN1A-208ENST00000625916 RAB21Q9UL25 225 aa3.19□□□□□ -1.9
SCN1A-208ENST00000625916 BMPR1BO00238 502 aa3.18□□□□□ -1.9
SCN1A-208ENST00000625916 LDB2O43679 373 aa3.18□□□□□ -1.9
SCN1A-208ENST00000625916 SERPINI2O75830 405 aa3.18□□□□□ -1.9
SCN1A-208ENST00000625916 SERPINB2P05120 415 aa3.18□□□□□ -1.9
SCN1A-208ENST00000625916 DAOP14920 347 aa3.18□□□□□ -1.9
SCN1A-208ENST00000625916 NAGAP17050 411 aa3.18□□□□□ -1.9
SCN1A-208ENST00000625916 STT3AP46977 705 aa3.18□□□□□ -1.9
SCN1A-208ENST00000625916 PPP3CCP48454 512 aa3.18□□□□□ -1.9
SCN1A-208ENST00000625916 GALEQ14376 348 aa3.18□□□□□ -1.9
SCN1A-208ENST00000625916 ZNF284Q2VY69 593 aa3.18□□□□□ -1.9
SCN1A-208ENST00000625916 KRTAP5-4Q6L8H1 288 aa3.18□□□□□ -1.9
SCN1A-208ENST00000625916 RETSATQ6NUM9 610 aa3.18□□□□□ -1.9
SCN1A-208ENST00000625916 FBXO38Q6PIJ6 1188 aa3.18□□□□□ -1.9
SCN1A-208ENST00000625916 ANKS1BQ7Z6G8 1248 aa3.18□□□□□ -1.9
SCN1A-208ENST00000625916 TMEM217Q8N7C4 229 aa3.18□□□□□ -1.9
SCN1A-208ENST00000625916 LILRB1Q8NHL6 650 aaPredicted RBP3.18□□□□□ -1.9
SCN1A-208ENST00000625916 SLC35F5Q8WV83 523 aa3.18□□□□□ -1.9
SCN1A-208ENST00000625916 ZNF333Q96JL9 665 aa3.18□□□□□ -1.9
SCN1A-208ENST00000625916 GFM1Q96RP9 751 aaKnown RBP3.18□□□□□ -1.9
SCN1A-208ENST00000625916 PKP4Q99569 1192 aa3.18□□□□□ -1.9
SCN1A-208ENST00000625916 SDF2L1Q9HCN8 221 aa3.18□□□□□ -1.9
SCN1A-208ENST00000625916 ARL15Q9NXU5 204 aa3.18□□□□□ -1.9
SCN1A-208ENST00000625916 OBP2AQ9NY56 170 aa3.18□□□□□ -1.9
SCN1A-208ENST00000625916 TRPC5Q9UL62 973 aaPredicted RBP3.18□□□□□ -1.9
SCN1A-208ENST00000625916 CA14Q9ULX7 337 aa3.18□□□□□ -1.9
SCN1A-208ENST00000625916 SRPRBQ9Y5M8 271 aaKnown RBP3.18□□□□□ -1.9
SCN1A-208ENST00000625916 EID1Q9Y6B2 187 aa3.18□□□□□ -1.9
SCN1A-208ENST00000625916 CYP3A7-CYP3A51PA0A087WV96 503 aa3.17□□□□□ -1.9
SCN1A-208ENST00000625916 TBC1D3DA0A087WVF3 549 aa3.17□□□□□ -1.9
SCN1A-208ENST00000625916 TBC1D3IA0A087WXS9 549 aa3.17□□□□□ -1.9
SCN1A-208ENST00000625916 TBC1D3EA0A087X179 549 aa3.17□□□□□ -1.9
SCN1A-208ENST00000625916 TBC1D3KA0A087X1G2 549 aa3.17□□□□□ -1.9
SCN1A-208ENST00000625916 LOC105369274A0A096LPK9 316 aa3.17□□□□□ -1.9
SCN1A-208ENST00000625916 LOC102723532A0A0G2JNH3 316 aa3.17□□□□□ -1.9
SCN1A-208ENST00000625916 FAM234BA2RU67 622 aa3.17□□□□□ -1.9
SCN1A-208ENST00000625916 TBC1D3BA6NDS4 549 aa3.17□□□□□ -1.9
SCN1A-208ENST00000625916 TBC1D3FA6NER0 549 aaPredicted RBP3.17□□□□□ -1.9
SCN1A-208ENST00000625916 SERINC4A6NH21 518 aa3.17□□□□□ -1.9
SCN1A-208ENST00000625916 TBC1D3LB9A6J9 549 aa3.17□□□□□ -1.9
SCN1A-208ENST00000625916 TBC1D3HP0C7X1 549 aa3.17□□□□□ -1.9
SCN1A-208ENST00000625916 GNLYP22749 145 aa3.17□□□□□ -1.9
SCN1A-208ENST00000625916 CYP3A7P24462 503 aa3.17□□□□□ -1.9
SCN1A-208ENST00000625916 CYP2J2P51589 502 aa3.17□□□□□ -1.9
SCN1A-208ENST00000625916 FOXL2P58012 376 aa3.17□□□□□ -1.9
SCN1A-208ENST00000625916 RHAGQ02094 409 aa3.17□□□□□ -1.9
SCN1A-208ENST00000625916 RBM39Q14498 530 aaKnown RBP3.17□□□□□ -1.9
SCN1A-208ENST00000625916 TBC1D3GQ6DHY5 549 aa3.17□□□□□ -1.9
SCN1A-208ENST00000625916 TBC1D3CQ6IPX1 549 aa3.17□□□□□ -1.9
SCN1A-208ENST00000625916 TBC1D3Q8IZP1 549 aaPredicted RBP3.17□□□□□ -1.9
SCN1A-208ENST00000625916 OR4N4Q8N0Y3 316 aa3.17□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms