RNA–Protein interactions for RNA: ENST00000618469.1

BRCA1-228, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 718 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-228ENST00000618469 CDH4P55283 916 aa16.44■□□□□ 0.22
BRCA1-228ENST00000618469 OXCT1P55809 520 aa16.44■□□□□ 0.22
BRCA1-228ENST00000618469 HDAC4P56524 1084 aa16.44■□□□□ 0.22
BRCA1-228ENST00000618469 IRX4P78413 519 aa16.44■□□□□ 0.22
BRCA1-228ENST00000618469 ECT2LQ008S8 904 aa16.44■□□□□ 0.22
BRCA1-228ENST00000618469 ARL13BQ3SXY8 428 aa16.44■□□□□ 0.22
BRCA1-228ENST00000618469 C5orf22Q49AR2 442 aa16.44■□□□□ 0.22
BRCA1-228ENST00000618469 ACBD5Q5T8D3 534 aaPredicted RBP16.44■□□□□ 0.22
BRCA1-228ENST00000618469 DCUN1D2Q6PH85 259 aa16.44■□□□□ 0.22
BRCA1-228ENST00000618469 WDR59Q6PJI9 974 aa16.44■□□□□ 0.22
BRCA1-228ENST00000618469 SLC36A4Q6YBV0 504 aa16.44■□□□□ 0.22
BRCA1-228ENST00000618469 TFAP2DQ7Z6R9 452 aa16.44■□□□□ 0.22
BRCA1-228ENST00000618469 DNAAF5Q86Y56 855 aa16.44■□□□□ 0.22
BRCA1-228ENST00000618469 OR52K2Q8NGK3 314 aa16.44■□□□□ 0.22
BRCA1-228ENST00000618469 IQCDQ96DY2 449 aa16.44■□□□□ 0.22
BRCA1-228ENST00000618469 HAPLN3Q96S86 360 aa16.44■□□□□ 0.22
BRCA1-228ENST00000618469 MUC3BQ9H195 1237 aa16.44■□□□□ 0.22
BRCA1-228ENST00000618469 TMEM9BQ9NQ34 198 aa16.44■□□□□ 0.22
BRCA1-228ENST00000618469 PRSS16Q9NQE7 514 aa16.44■□□□□ 0.22
BRCA1-228ENST00000618469 MPP6Q9NZW5 540 aa16.44■□□□□ 0.22
BRCA1-228ENST00000618469 VPS28Q9UK41 221 aa16.44■□□□□ 0.22
BRCA1-228ENST00000618469 DOCK4Q8N1I0 1966 aa16.44■□□□□ 0.22
BRCA1-228ENST00000618469 ATXN2Q99700 1313 aaKnown RBP16.44■□□□□ 0.22
BRCA1-228ENST00000618469 GON4LQ3T8J9 2241 aa16.43■□□□□ 0.22
BRCA1-228ENST00000618469 DDX3XO00571 662 aaKnown RBP eCLIP16.43■□□□□ 0.221e-8■■■□□ 17.6
BRCA1-228ENST00000618469 KHNYNO15037 678 aaKnown RBP16.43■□□□□ 0.22
BRCA1-228ENST00000618469 AP5Z1O43299 807 aa16.43■□□□□ 0.22
BRCA1-228ENST00000618469 SRGAP2O75044 1071 aa16.43■□□□□ 0.22
BRCA1-228ENST00000618469 GYPCP04921 128 aa16.43■□□□□ 0.22
BRCA1-228ENST00000618469 RHOCP08134 193 aa16.43■□□□□ 0.22
BRCA1-228ENST00000618469 SRPRAP08240 638 aaKnown RBP16.43■□□□□ 0.22
BRCA1-228ENST00000618469 ACADMP11310 421 aa16.43■□□□□ 0.22
BRCA1-228ENST00000618469 PTGER3P43115 390 aa16.43■□□□□ 0.22
BRCA1-228ENST00000618469 RPL7AP62424 266 aaKnown RBP16.43■□□□□ 0.22
BRCA1-228ENST00000618469 ZBED6P86452 979 aa16.43■□□□□ 0.22
BRCA1-228ENST00000618469 PPP1R15BQ5SWA1 713 aa16.43■□□□□ 0.22
BRCA1-228ENST00000618469 LYSMD4Q5XG99 296 aa16.43■□□□□ 0.22
BRCA1-228ENST00000618469 DEFB119Q8N690 84 aa16.43■□□□□ 0.22
BRCA1-228ENST00000618469 CCDC185Q8N715 623 aa16.43■□□□□ 0.22
BRCA1-228ENST00000618469 PIGKQ92643 395 aa16.43■□□□□ 0.22
BRCA1-228ENST00000618469 RPL10LQ96L21 214 aaKnown RBP16.43■□□□□ 0.22
BRCA1-228ENST00000618469 C1orf74Q96LT6 269 aa16.43■□□□□ 0.22
BRCA1-228ENST00000618469 FBRSQ9HAH7 460 aa16.43■□□□□ 0.22
BRCA1-228ENST00000618469 USP36Q9P275 1121 aaKnown RBP16.43■□□□□ 0.22
BRCA1-228ENST00000618469 KLK13Q9UKR3 277 aa16.43■□□□□ 0.22
BRCA1-228ENST00000618469 ITIH6Q6UXX5 1313 aa16.43■□□□□ 0.22
BRCA1-228ENST00000618469 PKD1L2Q7Z442 2459 aa16.42■□□□□ 0.22
BRCA1-228ENST00000618469 IGLV3-10A0A075B6K4 115 aa16.42■□□□□ 0.22
BRCA1-228ENST00000618469 SPAARA0A1B0GVQ0 90 aa16.42■□□□□ 0.22
BRCA1-228ENST00000618469 TTC34A8MYJ7 566 aa16.42■□□□□ 0.22
BRCA1-228ENST00000618469 CBFA2T2O43439 604 aa16.42■□□□□ 0.22
BRCA1-228ENST00000618469 NDUFS2O75306 463 aa16.42■□□□□ 0.22
BRCA1-228ENST00000618469 CEACAM1P13688 526 aa16.42■□□□□ 0.22
BRCA1-228ENST00000618469 ADRA1BP35368 520 aa16.42■□□□□ 0.22
BRCA1-228ENST00000618469 MAPK8P45983 427 aa16.42■□□□□ 0.22
BRCA1-228ENST00000618469 TPMTP51580 245 aa16.42■□□□□ 0.22
BRCA1-228ENST00000618469 ZNF143P52747 638 aaPredicted RBP16.42■□□□□ 0.22
BRCA1-228ENST00000618469 PLK1P53350 603 aa16.42■□□□□ 0.22
BRCA1-228ENST00000618469 SULT2A1Q06520 285 aa16.42■□□□□ 0.22
BRCA1-228ENST00000618469 HNRNPA1L2Q32P51 320 aaKnown RBP16.42■□□□□ 0.22
BRCA1-228ENST00000618469 KDM1BQ8NB78 822 aa16.42■□□□□ 0.22
BRCA1-228ENST00000618469 CENPIQ92674 756 aaPredicted RBP16.42■□□□□ 0.22
BRCA1-228ENST00000618469 ZNF653Q96CK0 615 aa16.42■□□□□ 0.22
BRCA1-228ENST00000618469 VCPIP1Q96JH7 1222 aa16.42■□□□□ 0.22
BRCA1-228ENST00000618469 ZYG11BQ9C0D3 744 aa16.42■□□□□ 0.22
BRCA1-228ENST00000618469 FSCN3Q9NQT6 498 aa16.42■□□□□ 0.22
BRCA1-228ENST00000618469 SUN2Q9UH99 717 aa16.42■□□□□ 0.22
BRCA1-228ENST00000618469 SLC25A13Q9UJS0 675 aa16.42■□□□□ 0.22
BRCA1-228ENST00000618469 CAPN11Q9UMQ6 739 aa16.42■□□□□ 0.22
BRCA1-228ENST00000618469 TBC1D30Q9Y2I9 924 aa16.42■□□□□ 0.22
BRCA1-228ENST00000618469 LUC7L2Q9Y383 392 aaKnown RBP16.42■□□□□ 0.22
BRCA1-228ENST00000618469 PCNX2A6NKB5 2137 aa16.42■□□□□ 0.22
BRCA1-228ENST00000618469 EDDM13A0A1B0GTR0 161 aa16.41■□□□□ 0.22
BRCA1-228ENST00000618469 DRGXA6NNA5 263 aa16.41■□□□□ 0.22
BRCA1-228ENST00000618469 SIN3BO75182 1162 aa16.41■□□□□ 0.22
BRCA1-228ENST00000618469 FTLP02792 175 aaPredicted RBP16.41■□□□□ 0.22
BRCA1-228ENST00000618469 GZMAP12544 262 aa16.41■□□□□ 0.22
BRCA1-228ENST00000618469 DESP17661 470 aa16.41■□□□□ 0.22
BRCA1-228ENST00000618469 CD6P30203 668 aa16.41■□□□□ 0.22
BRCA1-228ENST00000618469 OR1E1P30953 314 aa16.41■□□□□ 0.22
BRCA1-228ENST00000618469 PI4KAP42356 2102 aa16.41■□□□□ 0.22
BRCA1-228ENST00000618469 OGDHQ02218 1023 aa16.41■□□□□ 0.22
BRCA1-228ENST00000618469 TTC31Q49AM3 519 aaPredicted RBP16.41■□□□□ 0.22
BRCA1-228ENST00000618469 C6orf118Q5T5N4 469 aa16.41■□□□□ 0.22
BRCA1-228ENST00000618469 HGSNATQ68CP4 663 aa16.41■□□□□ 0.22
BRCA1-228ENST00000618469 ZNF776Q68DI1 518 aaPredicted RBP16.41■□□□□ 0.22
BRCA1-228ENST00000618469 C19orf48Q6RUI8 117 aa16.41■□□□□ 0.22
BRCA1-228ENST00000618469 TMC6Q7Z403 805 aa16.41■□□□□ 0.22
BRCA1-228ENST00000618469 METTL3Q86U44 580 aaKnown RBP16.41■□□□□ 0.22
BRCA1-228ENST00000618469 FAM124AQ86V42 546 aa16.41■□□□□ 0.22
BRCA1-228ENST00000618469 VPS36Q86VN1 386 aa16.41■□□□□ 0.22
BRCA1-228ENST00000618469 SYN2Q92777 582 aaPredicted RBP16.41■□□□□ 0.22
BRCA1-228ENST00000618469 NTAN1Q96AB6 310 aa16.41■□□□□ 0.22
BRCA1-228ENST00000618469 ALG14Q96F25 216 aa16.41■□□□□ 0.22
BRCA1-228ENST00000618469 TOE1Q96GM8 510 aaKnown RBP16.41■□□□□ 0.22
BRCA1-228ENST00000618469 HSPA12BQ96MM6 686 aa16.41■□□□□ 0.22
BRCA1-228ENST00000618469 PPP1R9BQ96SB3 815 aa16.41■□□□□ 0.22
BRCA1-228ENST00000618469 FEM1AQ9BSK4 669 aa16.41■□□□□ 0.22
BRCA1-228ENST00000618469 CNPY3Q9BT09 278 aa16.41■□□□□ 0.22
BRCA1-228ENST00000618469 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP16.41■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms