RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 PTPRN2Q92932 1015 aa16.57■□□□□ 0.24
TRIM28-213ENST00000598355 ERLEC1Q96DZ1 483 aa16.57■□□□□ 0.24
TRIM28-213ENST00000598355 SIPA1Q96FS4 1042 aa16.57■□□□□ 0.24
TRIM28-213ENST00000598355 TRIM7Q9C029 511 aa16.57■□□□□ 0.24
TRIM28-213ENST00000598355 TMEM248Q9NWD8 314 aa16.57■□□□□ 0.24
TRIM28-213ENST00000598355 SLCO3A1Q9UIG8 710 aa16.57■□□□□ 0.24
TRIM28-213ENST00000598355 FZD10Q9ULW2 581 aa16.57■□□□□ 0.24
TRIM28-213ENST00000598355 CYP8B1Q9UNU6 501 aa16.57■□□□□ 0.24
TRIM28-213ENST00000598355 TP53BP1Q12888 1972 aaPredicted RBP16.57■□□□□ 0.24
TRIM28-213ENST00000598355 CACNA1AO00555 2505 aa16.56■□□□□ 0.24
TRIM28-213ENST00000598355 DNAH14Q0VDD8 3507 aa16.56■□□□□ 0.24
TRIM28-213ENST00000598355 EDDM13A0A1B0GTR0 161 aa16.56■□□□□ 0.24
TRIM28-213ENST00000598355 CXorf51AA0A1B0GTR3 108 aa16.56■□□□□ 0.24
TRIM28-213ENST00000598355 ILVBLA1L0T0 632 aa16.56■□□□□ 0.24
TRIM28-213ENST00000598355 TTC34A8MYJ7 566 aa16.56■□□□□ 0.24
TRIM28-213ENST00000598355 FOXD2O60548 495 aaPredicted RBP16.56■□□□□ 0.24
TRIM28-213ENST00000598355 MFAP3LO75121 409 aa16.56■□□□□ 0.24
TRIM28-213ENST00000598355 SIN3BO75182 1162 aa16.56■□□□□ 0.24
TRIM28-213ENST00000598355 RHOCP08134 193 aa16.56■□□□□ 0.24
TRIM28-213ENST00000598355 ZNF806P0C7X5 589 aa16.56■□□□□ 0.24
TRIM28-213ENST00000598355 L1CAMP32004 1257 aa16.56■□□□□ 0.24
TRIM28-213ENST00000598355 MAPKAPK2P49137 400 aa16.56■□□□□ 0.24
TRIM28-213ENST00000598355 TPMTP51580 245 aa16.56■□□□□ 0.24
TRIM28-213ENST00000598355 RPS14P62263 151 aaKnown RBP16.56■□□□□ 0.24
TRIM28-213ENST00000598355 MAPK8IP2Q13387 824 aaPredicted RBP16.56■□□□□ 0.24
TRIM28-213ENST00000598355 ASTE1Q2TB18 679 aaPredicted RBP16.56■□□□□ 0.24
TRIM28-213ENST00000598355 C6orf118Q5T5N4 469 aa16.56■□□□□ 0.24
TRIM28-213ENST00000598355 RNF219Q5W0B1 726 aaPredicted RBP16.56■□□□□ 0.24
TRIM28-213ENST00000598355 PRR23CQ6ZRP0 262 aa16.56■□□□□ 0.24
TRIM28-213ENST00000598355 TFAP2DQ7Z6R9 452 aa16.56■□□□□ 0.24
TRIM28-213ENST00000598355 SLFN11Q7Z7L1 901 aa16.56■□□□□ 0.24
TRIM28-213ENST00000598355 KIAA2013Q8IYS2 634 aa16.56■□□□□ 0.24
TRIM28-213ENST00000598355 RPL10LQ96L21 214 aaKnown RBP16.56■□□□□ 0.24
TRIM28-213ENST00000598355 MAGEB5Q9BZ81 275 aa16.56■□□□□ 0.24
TRIM28-213ENST00000598355 ARRDC1-AS1Q9H2J1 176 aa16.56■□□□□ 0.24
TRIM28-213ENST00000598355 MTG2Q9H4K7 406 aa16.56■□□□□ 0.24
TRIM28-213ENST00000598355 WSB2Q9NYS7 404 aaPredicted RBP16.56■□□□□ 0.24
TRIM28-213ENST00000598355 VPS28Q9UK41 221 aa16.56■□□□□ 0.24
TRIM28-213ENST00000598355 A0A0D9SEW6 157 aa16.55■□□□□ 0.24
TRIM28-213ENST00000598355 SSU72P8A0A1W2PR75 194 aa16.55■□□□□ 0.24
TRIM28-213ENST00000598355 C10orf142B7Z368 130 aa16.55■□□□□ 0.24
TRIM28-213ENST00000598355 SRGAP2O75044 1071 aa16.55■□□□□ 0.24
TRIM28-213ENST00000598355 ZMPSTE24O75844 475 aa16.55■□□□□ 0.24
TRIM28-213ENST00000598355 RHOQP17081 205 aa16.55■□□□□ 0.24
TRIM28-213ENST00000598355 CD6P30203 668 aa16.55■□□□□ 0.24
TRIM28-213ENST00000598355 OR1E1P30953 314 aa16.55■□□□□ 0.24
TRIM28-213ENST00000598355 HOXD12P35452 270 aa16.55■□□□□ 0.24
TRIM28-213ENST00000598355 PTGER3P43115 390 aa16.55■□□□□ 0.24
TRIM28-213ENST00000598355 LMNB2Q03252 620 aa16.55■□□□□ 0.24
TRIM28-213ENST00000598355 TBX2Q13207 712 aaPredicted RBP16.55■□□□□ 0.24
TRIM28-213ENST00000598355 ZNF776Q68DI1 518 aaPredicted RBP16.55■□□□□ 0.24
TRIM28-213ENST00000598355 ALKBH5Q6P6C2 394 aaKnown RBP16.55■□□□□ 0.24
TRIM28-213ENST00000598355 SLC41A1Q8IVJ1 513 aa16.55■□□□□ 0.24
TRIM28-213ENST00000598355 SH2D3CQ8N5H7 860 aa16.55■□□□□ 0.24
TRIM28-213ENST00000598355 OR8K1Q8NGG5 319 aa16.55■□□□□ 0.24
TRIM28-213ENST00000598355 TBC1D31Q96DN5 1066 aa16.55■□□□□ 0.24
TRIM28-213ENST00000598355 PEBP4Q96S96 227 aa16.55■□□□□ 0.24
TRIM28-213ENST00000598355 C2orf49Q9BVC5 232 aaPredicted RBP16.55■□□□□ 0.24
TRIM28-213ENST00000598355 MRPL47Q9HD33 250 aaKnown RBP16.55■□□□□ 0.24
TRIM28-213ENST00000598355 ABHD10Q9NUJ1 306 aa16.55■□□□□ 0.24
TRIM28-213ENST00000598355 NDFIP2Q9NV92 336 aa16.55■□□□□ 0.24
TRIM28-213ENST00000598355 VPS51Q9UID3 782 aa16.55■□□□□ 0.24
TRIM28-213ENST00000598355 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa16.54■□□□□ 0.24
TRIM28-213ENST00000598355 WASH4PA8MWX3 477 aa16.54■□□□□ 0.24
TRIM28-213ENST00000598355 EIF3CLB5ME19 914 aaKnown RBP16.54■□□□□ 0.24
TRIM28-213ENST00000598355 LRCH4O75427 683 aa16.54■□□□□ 0.24
TRIM28-213ENST00000598355 CYP1A2P05177 515 aa16.54■□□□□ 0.24
TRIM28-213ENST00000598355 DESP17661 470 aa16.54■□□□□ 0.24
TRIM28-213ENST00000598355 PSMA2P25787 234 aa16.54■□□□□ 0.24
TRIM28-213ENST00000598355 HTR7P34969 479 aa16.54■□□□□ 0.24
TRIM28-213ENST00000598355 RPL6Q02878 288 aaKnown RBP16.54■□□□□ 0.24
TRIM28-213ENST00000598355 ELAVL3Q14576 367 aaKnown RBP16.54■□□□□ 0.24
TRIM28-213ENST00000598355 ACAP1Q15027 740 aa16.54■□□□□ 0.24
TRIM28-213ENST00000598355 EFHC2Q5JST6 749 aa16.54■□□□□ 0.24
TRIM28-213ENST00000598355 CYP2U1Q7Z449 544 aa16.54■□□□□ 0.24
TRIM28-213ENST00000598355 TMEFF1Q8IYR6 380 aa16.54■□□□□ 0.24
TRIM28-213ENST00000598355 PYROXD2Q8N2H3 581 aa16.54■□□□□ 0.24
TRIM28-213ENST00000598355 NIPA2Q8N8Q9 360 aa16.54■□□□□ 0.24
TRIM28-213ENST00000598355 FAM131CQ96AQ9 280 aa16.54■□□□□ 0.24
TRIM28-213ENST00000598355 ZNF419Q96HQ0 510 aaPredicted RBP16.54■□□□□ 0.24
TRIM28-213ENST00000598355 FAM129BQ96TA1 746 aa16.54■□□□□ 0.24
TRIM28-213ENST00000598355 EIF3CQ99613 913 aaKnown RBP16.54■□□□□ 0.24
TRIM28-213ENST00000598355 ACE2Q9BYF1 805 aaPredicted RBP16.54■□□□□ 0.24
TRIM28-213ENST00000598355 THAP2Q9H0W7 228 aa16.54■□□□□ 0.24
TRIM28-213ENST00000598355 MUC3BQ9H195 1237 aa16.54■□□□□ 0.24
TRIM28-213ENST00000598355 PCED1AQ9H1Q7 454 aa16.54■□□□□ 0.24
TRIM28-213ENST00000598355 VPS45Q9NRW7 570 aa16.54■□□□□ 0.24
TRIM28-213ENST00000598355 SLC25A13Q9UJS0 675 aa16.54■□□□□ 0.24
TRIM28-213ENST00000598355 SCML1Q9UN30 329 aa16.54■□□□□ 0.24
TRIM28-213ENST00000598355 ADAMTS9Q9P2N4 1935 aa16.54■□□□□ 0.24
TRIM28-213ENST00000598355 PLXNA2O75051 1894 aa16.53■□□□□ 0.24
TRIM28-213ENST00000598355 SNAP91O60641 907 aa16.53■□□□□ 0.24
TRIM28-213ENST00000598355 SRCP12931 536 aa16.53■□□□□ 0.24
TRIM28-213ENST00000598355 VAV1P15498 845 aa16.53■□□□□ 0.24
TRIM28-213ENST00000598355 OXTRP30559 389 aa16.53■□□□□ 0.24
TRIM28-213ENST00000598355 EIF4A3P38919 411 aaKnown RBP16.53■□□□□ 0.24
TRIM28-213ENST00000598355 DPP6P42658 865 aa16.53■□□□□ 0.24
TRIM28-213ENST00000598355 CLCN6P51797 869 aa16.53■□□□□ 0.24
TRIM28-213ENST00000598355 KRT83P78385 493 aa16.53■□□□□ 0.24
TRIM28-213ENST00000598355 CREB5Q02930 508 aa16.53■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms