RNA–Protein interactions for RNA: ENST00000569063.5

CLK3-225, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 833 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-225ENST00000569063 SLC25A13Q9UJS0 675 aa20.85■□□□□ 0.93
CLK3-225ENST00000569063 VPS28Q9UK41 221 aa20.85■□□□□ 0.93
CLK3-225ENST00000569063 NCKAP1Q9Y2A7 1128 aa20.85■□□□□ 0.93
CLK3-225ENST00000569063 A0A1B0GTW7 788 aa20.84■□□□□ 0.93
CLK3-225ENST00000569063 TCRBV5S1A1TA0A578 114 aa20.84■□□□□ 0.93
CLK3-225ENST00000569063 ARHGAP33O14559 1287 aa20.84■□□□□ 0.93
CLK3-225ENST00000569063 ATP9BO43861 1147 aa20.84■□□□□ 0.93
CLK3-225ENST00000569063 SEMA4FO95754 770 aa20.84■□□□□ 0.93
CLK3-225ENST00000569063 SYPP08247 313 aa20.84■□□□□ 0.93
CLK3-225ENST00000569063 ELAVL3Q14576 367 aaKnown RBP20.84■□□□□ 0.93
CLK3-225ENST00000569063 CDO1Q16878 200 aa20.84■□□□□ 0.93
CLK3-225ENST00000569063 ARL13BQ3SXY8 428 aa20.84■□□□□ 0.93
CLK3-225ENST00000569063 ACAD10Q6JQN1 1059 aa20.84■□□□□ 0.93
CLK3-225ENST00000569063 MMAAQ8IVH4 418 aaKnown RBP20.84■□□□□ 0.93
CLK3-225ENST00000569063 STK40Q8N2I9 435 aa20.84■□□□□ 0.93
CLK3-225ENST00000569063 C6orf106Q9H6K1 298 aaPredicted RBP20.84■□□□□ 0.93
CLK3-225ENST00000569063 CBX8Q9HC52 389 aa20.84■□□□□ 0.93
CLK3-225ENST00000569063 FSCN3Q9NQT6 498 aa20.84■□□□□ 0.93
CLK3-225ENST00000569063 MPP6Q9NZW5 540 aa20.84■□□□□ 0.93
CLK3-225ENST00000569063 PPARGC1AQ9UBK2 798 aaKnown RBP20.84■□□□□ 0.93
CLK3-225ENST00000569063 ZNF212Q9UDV6 495 aa20.84■□□□□ 0.93
CLK3-225ENST00000569063 LRRC53A6NM62 1247 aa20.83■□□□□ 0.93
CLK3-225ENST00000569063 MID1O15344 667 aa20.83■□□□□ 0.93
CLK3-225ENST00000569063 SRGAP2O75044 1071 aa20.83■□□□□ 0.93
CLK3-225ENST00000569063 SERPINC1P01008 464 aa20.83■□□□□ 0.93
CLK3-225ENST00000569063 RHOCP08134 193 aa20.83■□□□□ 0.93
CLK3-225ENST00000569063 VAV1P15498 845 aa20.83■□□□□ 0.93
CLK3-225ENST00000569063 GPD1P21695 349 aa20.83■□□□□ 0.93
CLK3-225ENST00000569063 OR1E1P30953 314 aa20.83■□□□□ 0.93
CLK3-225ENST00000569063 MAPK8P45983 427 aa20.83■□□□□ 0.93
CLK3-225ENST00000569063 KRT83P78385 493 aa20.83■□□□□ 0.93
CLK3-225ENST00000569063 NRG1Q02297 640 aaPredicted RBP20.83■□□□□ 0.93
CLK3-225ENST00000569063 C6orf118Q5T5N4 469 aa20.83■□□□□ 0.93
CLK3-225ENST00000569063 PPP1R2P3Q6NXS1 205 aa20.83■□□□□ 0.93
CLK3-225ENST00000569063 WDR59Q6PJI9 974 aa20.83■□□□□ 0.93
CLK3-225ENST00000569063 ZNF783Q6ZMS7 281 aa20.83■□□□□ 0.93
CLK3-225ENST00000569063 C1orf216Q8TAB5 229 aa20.83■□□□□ 0.93
CLK3-225ENST00000569063 FAM172AQ8WUF8 416 aa20.83■□□□□ 0.93
CLK3-225ENST00000569063 PSMB7Q99436 277 aa20.83■□□□□ 0.93
CLK3-225ENST00000569063 C2orf49Q9BVC5 232 aaPredicted RBP20.83■□□□□ 0.93
CLK3-225ENST00000569063 EDEM3Q9BZQ6 932 aa20.83■□□□□ 0.93
CLK3-225ENST00000569063 ZYG11BQ9C0D3 744 aa20.83■□□□□ 0.93
CLK3-225ENST00000569063 OSBPL2Q9H1P3 480 aa20.83■□□□□ 0.93
CLK3-225ENST00000569063 FBXL12Q9NXK8 326 aa20.83■□□□□ 0.93
CLK3-225ENST00000569063 AIPL1Q9NZN9 384 aa20.83■□□□□ 0.93
CLK3-225ENST00000569063 OR12D3Q9UGF7 316 aa20.83■□□□□ 0.93
CLK3-225ENST00000569063 HS3ST2Q9Y278 367 aa20.83■□□□□ 0.93
CLK3-225ENST00000569063 ZBTB32Q9Y2Y4 487 aaPredicted RBP20.83■□□□□ 0.93
CLK3-225ENST00000569063 PCDH15Q96QU1 1955 aa20.83■□□□□ 0.92
CLK3-225ENST00000569063 KCNK5O95279 499 aa20.82■□□□□ 0.92
CLK3-225ENST00000569063 ADRB1P08588 477 aa20.82■□□□□ 0.92
CLK3-225ENST00000569063 TNFAIP3P21580 790 aa20.82■□□□□ 0.92
CLK3-225ENST00000569063 C5AR1P21730 350 aa20.82■□□□□ 0.92
CLK3-225ENST00000569063 SLC8A1P32418 973 aa20.82■□□□□ 0.92
CLK3-225ENST00000569063 ATXN3P54252 364 aaPredicted RBP20.82■□□□□ 0.92
CLK3-225ENST00000569063 HDAC4P56524 1084 aa20.82■□□□□ 0.92
CLK3-225ENST00000569063 TPM4P67936 248 aa20.82■□□□□ 0.92
CLK3-225ENST00000569063 PPP1R15BQ5SWA1 713 aa20.82■□□□□ 0.92
CLK3-225ENST00000569063 LRSAM1Q6UWE0 723 aa20.82■□□□□ 0.92
CLK3-225ENST00000569063 TFAP2DQ7Z6R9 452 aa20.82■□□□□ 0.92
CLK3-225ENST00000569063 LUZP1Q86V48 1076 aa20.82■□□□□ 0.92
CLK3-225ENST00000569063 MCOLN2Q8IZK6 566 aa20.82■□□□□ 0.92
CLK3-225ENST00000569063 SH2D3CQ8N5H7 860 aa20.82■□□□□ 0.92
CLK3-225ENST00000569063 VCPIP1Q96JH7 1222 aa20.82■□□□□ 0.92
CLK3-225ENST00000569063 GTPBP2Q9BX10 602 aaKnown RBP20.82■□□□□ 0.92
CLK3-225ENST00000569063 TTYH3Q9C0H2 523 aa20.82■□□□□ 0.92
CLK3-225ENST00000569063 RETREG1Q9H6L5 497 aa20.82■□□□□ 0.92
CLK3-225ENST00000569063 SERGEFQ9UGK8 458 aa20.82■□□□□ 0.92
CLK3-225ENST00000569063 ADAMTS1Q9UHI8 967 aa20.82■□□□□ 0.92
CLK3-225ENST00000569063 EIF2B4Q9UI10 523 aaKnown RBP20.82■□□□□ 0.92
CLK3-225ENST00000569063 FZD4Q9ULV1 537 aa20.82■□□□□ 0.92
CLK3-225ENST00000569063 A0A0D9SEW6 157 aa20.81■□□□□ 0.92
CLK3-225ENST00000569063 A0A1W2PP55 124 aa20.81■□□□□ 0.92
CLK3-225ENST00000569063 ILVBLA1L0T0 632 aa20.81■□□□□ 0.92
CLK3-225ENST00000569063 BCAT2O15382 392 aaPredicted RBP20.81■□□□□ 0.92
CLK3-225ENST00000569063 ADH1BP00325 375 aa20.81■□□□□ 0.92
CLK3-225ENST00000569063 ZNF143P52747 638 aaPredicted RBP20.81■□□□□ 0.92
CLK3-225ENST00000569063 DLG2Q15700 870 aa20.81■□□□□ 0.92
CLK3-225ENST00000569063 ASIC2Q16515 512 aa20.81■□□□□ 0.92
CLK3-225ENST00000569063 UAP1L1Q3KQV9 507 aa20.81■□□□□ 0.92
CLK3-225ENST00000569063 ACCSLQ4AC99 568 aa20.81■□□□□ 0.92
CLK3-225ENST00000569063 MANEALQ5VSG8 457 aa20.81■□□□□ 0.92
CLK3-225ENST00000569063 SFMBT2Q5VUG0 894 aa20.81■□□□□ 0.92
CLK3-225ENST00000569063 DNAJC24Q6P3W2 148 aa20.81■□□□□ 0.92
CLK3-225ENST00000569063 ZCCHC9Q8N567 271 aaKnown RBP20.81■□□□□ 0.92
CLK3-225ENST00000569063 DCAF4L2Q8NA75 395 aa20.81■□□□□ 0.92
CLK3-225ENST00000569063 GANCQ8TET4 914 aa20.81■□□□□ 0.92
CLK3-225ENST00000569063 BIRC7Q96CA5 298 aa20.81■□□□□ 0.92
CLK3-225ENST00000569063 OMDQ99983 421 aa20.81■□□□□ 0.92
CLK3-225ENST00000569063 ZDHHC5Q9C0B5 715 aa20.81■□□□□ 0.92
CLK3-225ENST00000569063 MIR1-1HGQ9H1L0 117 aa20.81■□□□□ 0.92
CLK3-225ENST00000569063 NEUROG2Q9H2A3 272 aa20.81■□□□□ 0.92
CLK3-225ENST00000569063 VPS51Q9UID3 782 aa20.81■□□□□ 0.92
CLK3-225ENST00000569063 GON4LQ3T8J9 2241 aa20.81■□□□□ 0.92
CLK3-225ENST00000569063 PI4KAP42356 2102 aa20.8■□□□□ 0.92
CLK3-225ENST00000569063 SNAP91O60641 907 aa20.8■□□□□ 0.92
CLK3-225ENST00000569063 RNASEH2AO75792 299 aaKnown RBP20.8■□□□□ 0.92
CLK3-225ENST00000569063 SRCP12931 536 aa20.8■□□□□ 0.92
CLK3-225ENST00000569063 GOT1P17174 413 aa20.8■□□□□ 0.92
CLK3-225ENST00000569063 CSRP1P21291 193 aaKnown RBP20.8■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms