RNA–Protein interactions for RNA: ENST00000563692.1

VPS39-207, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-207ENST00000563692 TRIP4Q15650 581 aaPredicted RBP9.17□□□□□ -0.94
VPS39-207ENST00000563692 HIF1AQ16665 826 aa9.17□□□□□ -0.94
VPS39-207ENST00000563692 KCTD19Q17RG1 926 aaPredicted RBP9.17□□□□□ -0.94
VPS39-207ENST00000563692 TUBB8Q3ZCM7 444 aa9.17□□□□□ -0.94
VPS39-207ENST00000563692 C10orf120Q5SQS8 335 aa9.17□□□□□ -0.94
VPS39-207ENST00000563692 AGBL2Q5U5Z8 902 aa9.17□□□□□ -0.94
VPS39-207ENST00000563692 RWDD4Q6NW29 188 aaKnown RBP9.17□□□□□ -0.94
VPS39-207ENST00000563692 PARM1Q6UWI2 310 aa9.17□□□□□ -0.94
VPS39-207ENST00000563692 ARHGEF18Q6ZSZ5 1173 aa9.17□□□□□ -0.94
VPS39-207ENST00000563692 ITIH5Q86UX2 942 aa9.17□□□□□ -0.94
VPS39-207ENST00000563692 NAT8LQ8N9F0 302 aa9.17□□□□□ -0.94
VPS39-207ENST00000563692 GLIS1Q8NBF1 620 aa9.17□□□□□ -0.94
VPS39-207ENST00000563692 PRSS33Q8NF86 280 aa9.17□□□□□ -0.94
VPS39-207ENST00000563692 GPR152Q8TDT2 470 aa9.17□□□□□ -0.94
VPS39-207ENST00000563692 CPT1BQ92523 772 aa9.17□□□□□ -0.94
VPS39-207ENST00000563692 ATOH1Q92858 354 aaPredicted RBP9.17□□□□□ -0.94
VPS39-207ENST00000563692 TBC1D31Q96DN5 1066 aa9.17□□□□□ -0.94
VPS39-207ENST00000563692 FCRL2Q96LA5 508 aaPredicted RBP9.17□□□□□ -0.94
VPS39-207ENST00000563692 TMEM109Q9BVC6 243 aa9.17□□□□□ -0.94
VPS39-207ENST00000563692 TTLL2Q9BWV7 592 aa9.17□□□□□ -0.94
VPS39-207ENST00000563692 NACA2Q9H009 215 aa9.17□□□□□ -0.94
VPS39-207ENST00000563692 CDC42EP4Q9H3Q1 356 aaKnown RBP9.17□□□□□ -0.94
VPS39-207ENST00000563692 CENPHQ9H3R5 247 aa9.17□□□□□ -0.94
VPS39-207ENST00000563692 TBC1D17Q9HA65 648 aa9.17□□□□□ -0.94
VPS39-207ENST00000563692 TMBIM4Q9HC24 238 aa9.17□□□□□ -0.94
VPS39-207ENST00000563692 ZFP14Q9HCL3 533 aa9.17□□□□□ -0.94
VPS39-207ENST00000563692 SAYSD1Q9NPB0 183 aa9.17□□□□□ -0.94
VPS39-207ENST00000563692 SLC2A4RGQ9NR83 387 aa9.17□□□□□ -0.94
VPS39-207ENST00000563692 TMPRSS4Q9NRS4 437 aa9.17□□□□□ -0.94
VPS39-207ENST00000563692 RAB6BQ9NRW1 208 aa9.17□□□□□ -0.94
VPS39-207ENST00000563692 ETNK2Q9NVF9 386 aa9.17□□□□□ -0.94
VPS39-207ENST00000563692 MTPAPQ9NVV4 582 aaKnown RBP eCLIP9.17□□□□□ -0.94
VPS39-207ENST00000563692 GOLGA6AQ9NYA3 693 aa9.17□□□□□ -0.94
VPS39-207ENST00000563692 TRPM5Q9NZQ8 1165 aa9.17□□□□□ -0.94
VPS39-207ENST00000563692 MARCH2Q9P0N8 246 aa9.17□□□□□ -0.94
VPS39-207ENST00000563692 BCCIPQ9P287 314 aaKnown RBP eCLIP9.17□□□□□ -0.94
VPS39-207ENST00000563692 MAGED2Q9UNF1 606 aaPredicted RBP9.17□□□□□ -0.94
VPS39-207ENST00000563692 FARP1Q9Y4F1 1045 aaPredicted RBP9.17□□□□□ -0.94
VPS39-207ENST00000563692 YIPF1Q9Y548 306 aa9.17□□□□□ -0.94
VPS39-207ENST00000563692 NFS1Q9Y697 457 aa9.17□□□□□ -0.94
VPS39-207ENST00000563692 ZNF318Q5VUA4 2279 aa9.17□□□□□ -0.94
VPS39-207ENST00000563692 PIEZO1Q92508 2521 aa9.16□□□□□ -0.94
VPS39-207ENST00000563692 C2orf16Q68DN1 1984 aa9.16□□□□□ -0.94
VPS39-207ENST00000563692 VWA8A3KMH1 1905 aa9.16□□□□□ -0.94
VPS39-207ENST00000563692 A0A087WUV0 522 aaPredicted RBP9.16□□□□□ -0.94
VPS39-207ENST00000563692 SLC12A8A0AV02 714 aa9.16□□□□□ -0.94
VPS39-207ENST00000563692 FAM72CH0Y354 149 aa9.16□□□□□ -0.94
VPS39-207ENST00000563692 TP73O15350 636 aa9.16□□□□□ -0.94
VPS39-207ENST00000563692 OPHN1O60890 802 aa9.16□□□□□ -0.94
VPS39-207ENST00000563692 ECI2O75521 394 aa9.16□□□□□ -0.94
VPS39-207ENST00000563692 SOAT2O75908 522 aa9.16□□□□□ -0.94
VPS39-207ENST00000563692 LRIG2O94898 1065 aa9.16□□□□□ -0.94
VPS39-207ENST00000563692 VNN2O95498 520 aa9.16□□□□□ -0.94
VPS39-207ENST00000563692 FGF19O95750 216 aa9.16□□□□□ -0.94
VPS39-207ENST00000563692 IVLP07476 585 aa9.16□□□□□ -0.94
VPS39-207ENST00000563692 ZDHHC11BP0C7U3 371 aa9.16□□□□□ -0.94
VPS39-207ENST00000563692 TSHRP16473 764 aa9.16□□□□□ -0.94
VPS39-207ENST00000563692 CEBPBP17676 345 aa9.16□□□□□ -0.94
VPS39-207ENST00000563692 AOC1P19801 751 aa9.16□□□□□ -0.94
VPS39-207ENST00000563692 ATP5DP30049 168 aa9.16□□□□□ -0.94
VPS39-207ENST00000563692 HOXD11P31277 338 aaPredicted RBP9.16□□□□□ -0.94
VPS39-207ENST00000563692 TUBP50607 506 aa9.16□□□□□ -0.94
VPS39-207ENST00000563692 USP46P62068 366 aa9.16□□□□□ -0.94
VPS39-207ENST00000563692 CDK16Q00536 496 aa9.16□□□□□ -0.94
VPS39-207ENST00000563692 GABPB1Q06547 395 aaPredicted RBP9.16□□□□□ -0.94
VPS39-207ENST00000563692 RING1Q06587 406 aa9.16□□□□□ -0.94
VPS39-207ENST00000563692 ZNF844Q08AG5 666 aa9.16□□□□□ -0.94
VPS39-207ENST00000563692 STAT4Q14765 748 aa9.16□□□□□ -0.94
VPS39-207ENST00000563692 KYNUQ16719 465 aa9.16□□□□□ -0.94
VPS39-207ENST00000563692 SLC5A9Q2M3M2 681 aa9.16□□□□□ -0.94
VPS39-207ENST00000563692 KRT71Q3SY84 523 aa9.16□□□□□ -0.94
VPS39-207ENST00000563692 HECTD3Q5T447 861 aa9.16□□□□□ -0.94
VPS39-207ENST00000563692 FAM72AQ5TYM5 149 aa9.16□□□□□ -0.94
VPS39-207ENST00000563692 SNX30Q5VWJ9 437 aa9.16□□□□□ -0.94
VPS39-207ENST00000563692 NUGGCQ68CJ6 796 aa9.16□□□□□ -0.94
VPS39-207ENST00000563692 FAM72DQ6L9T8 149 aa9.16□□□□□ -0.94
VPS39-207ENST00000563692 ALYREFQ86V81 257 aaKnown RBP9.16□□□□□ -0.94
VPS39-207ENST00000563692 FAM72BQ86X60 149 aa9.16□□□□□ -0.94
VPS39-207ENST00000563692 LRRC49Q8IUZ0 686 aa9.16□□□□□ -0.94
VPS39-207ENST00000563692 PALM2Q8IXS6 379 aa9.16□□□□□ -0.94
VPS39-207ENST00000563692 ARFGAP2Q8N6H7 521 aa9.16□□□□□ -0.94
VPS39-207ENST00000563692 TTC9BQ8N6N2 239 aa9.16□□□□□ -0.94
VPS39-207ENST00000563692 TMEM105Q8N8V8 129 aa9.16□□□□□ -0.94
VPS39-207ENST00000563692 ST13P5Q8NFI4 369 aaPredicted RBP9.16□□□□□ -0.94
VPS39-207ENST00000563692 FAM76AQ8TAV0 307 aa9.16□□□□□ -0.94
VPS39-207ENST00000563692 PYROXD1Q8WU10 500 aa9.16□□□□□ -0.94
VPS39-207ENST00000563692 PRCCQ92733 491 aaPredicted RBP9.16□□□□□ -0.94
VPS39-207ENST00000563692 FGF14Q92915 247 aa9.16□□□□□ -0.94
VPS39-207ENST00000563692 EXOC4Q96A65 974 aa9.16□□□□□ -0.94
VPS39-207ENST00000563692 SLC39A13Q96H72 371 aa9.16□□□□□ -0.94
VPS39-207ENST00000563692 BTN2A3PQ96KV6 586 aa9.16□□□□□ -0.94
VPS39-207ENST00000563692 ATP6V1G3Q96LB4 118 aa9.16□□□□□ -0.94
VPS39-207ENST00000563692 OLFM3Q96PB7 478 aa9.16□□□□□ -0.94
VPS39-207ENST00000563692 GCNAQ96QF7 691 aa9.16□□□□□ -0.94
VPS39-207ENST00000563692 VAT1Q99536 393 aa9.16□□□□□ -0.94
VPS39-207ENST00000563692 KXD1Q9BQD3 176 aa9.16□□□□□ -0.94
VPS39-207ENST00000563692 CRISPLD1Q9H336 500 aa9.16□□□□□ -0.94
VPS39-207ENST00000563692 RETREG1Q9H6L5 497 aa9.16□□□□□ -0.94
VPS39-207ENST00000563692 ANLNQ9NQW6 1124 aa9.16□□□□□ -0.94
VPS39-207ENST00000563692 OSER1Q9NX31 292 aa9.16□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms