RNA–Protein interactions for RNA: ENST00000560634.1

CSPG4P11-201, Transcript of chondroitin sulfate proteoglycan 4 pseudogene 11, humanhuman

BASIC

Gene CSPG4P11, Length 4,910 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P11-201ENST00000560634 HDAC7Q8WUI4 952 aa13.42□□□□□ -0.26
CSPG4P11-201ENST00000560634 DUSP9Q99956 384 aaKnown RBP13.42□□□□□ -0.26
CSPG4P11-201ENST00000560634 ELOVL4Q9GZR5 314 aa13.42□□□□□ -0.26
CSPG4P11-201ENST00000560634 RPRD1BQ9NQG5 326 aaKnown RBP13.42□□□□□ -0.26
CSPG4P11-201ENST00000560634 TRPM1Q7Z4N2 1603 aa13.42□□□□□ -0.26
CSPG4P11-201ENST00000560634 FAM205AQ6ZU69 1335 aa13.42□□□□□ -0.26
CSPG4P11-201ENST00000560634 A0A088AWK7 358 aa13.42□□□□□ -0.26
CSPG4P11-201ENST00000560634 BTN3A1O00481 513 aa13.42□□□□□ -0.26
CSPG4P11-201ENST00000560634 TNNI3P19429 210 aa13.42□□□□□ -0.26
CSPG4P11-201ENST00000560634 ZNF10P21506 573 aaPredicted RBP13.42□□□□□ -0.26
CSPG4P11-201ENST00000560634 IL2P60568 153 aa13.42□□□□□ -0.26
CSPG4P11-201ENST00000560634 POLR2LP62875 67 aaKnown RBP13.42□□□□□ -0.26
CSPG4P11-201ENST00000560634 PMF1Q6P1K2 205 aa13.42□□□□□ -0.26
CSPG4P11-201ENST00000560634 SLC27A1Q6PCB7 646 aa13.42□□□□□ -0.26
CSPG4P11-201ENST00000560634 GPSM1Q86YR5 675 aa13.42□□□□□ -0.26
CSPG4P11-201ENST00000560634 ZNF276Q8N554 614 aa13.42□□□□□ -0.26
CSPG4P11-201ENST00000560634 NKAPQ8N5F7 415 aaKnown RBP13.42□□□□□ -0.26
CSPG4P11-201ENST00000560634 POMGNT2Q8NAT1 580 aa13.42□□□□□ -0.26
CSPG4P11-201ENST00000560634 ACMSDQ8TDX5 336 aa13.42□□□□□ -0.26
CSPG4P11-201ENST00000560634 UBASH3BQ8TF42 649 aa13.42□□□□□ -0.26
CSPG4P11-201ENST00000560634 DNAJC5Q9H3Z4 198 aa13.42□□□□□ -0.26
CSPG4P11-201ENST00000560634 C3orf18Q9UK00 162 aa13.42□□□□□ -0.26
CSPG4P11-201ENST00000560634 ALKQ9UM73 1620 aa13.42□□□□□ -0.26
CSPG4P11-201ENST00000560634 UBE2Q2LH0YL09 131 aa13.42□□□□□ -0.26
CSPG4P11-201ENST00000560634 KCNK1O00180 336 aa13.42□□□□□ -0.26
CSPG4P11-201ENST00000560634 UNC5CO95185 931 aa13.42□□□□□ -0.26
CSPG4P11-201ENST00000560634 IGSF6O95976 241 aa13.42□□□□□ -0.26
CSPG4P11-201ENST00000560634 CHN2P52757 468 aa13.42□□□□□ -0.26
CSPG4P11-201ENST00000560634 PSMD4P55036 377 aaKnown RBP13.42□□□□□ -0.26
CSPG4P11-201ENST00000560634 NDUFAF6Q330K2 333 aa13.42□□□□□ -0.26
CSPG4P11-201ENST00000560634 RNF43Q68DV7 783 aa13.42□□□□□ -0.26
CSPG4P11-201ENST00000560634 WDR59Q6PJI9 974 aa13.42□□□□□ -0.26
CSPG4P11-201ENST00000560634 SYT12Q8IV01 421 aa13.42□□□□□ -0.26
CSPG4P11-201ENST00000560634 DEFB106AQ8N104 65 aa13.42□□□□□ -0.26
CSPG4P11-201ENST00000560634 FBXW8Q8N3Y1 598 aa13.42□□□□□ -0.26
CSPG4P11-201ENST00000560634 SFRP1Q8N474 314 aa13.42□□□□□ -0.26
CSPG4P11-201ENST00000560634 MED8Q96G25 268 aa13.42□□□□□ -0.26
CSPG4P11-201ENST00000560634 CPB2Q96IY4 423 aa13.42□□□□□ -0.26
CSPG4P11-201ENST00000560634 POMKQ9H5K3 350 aa13.42□□□□□ -0.26
CSPG4P11-201ENST00000560634 CDHR5Q9HBB8 845 aa13.42□□□□□ -0.26
CSPG4P11-201ENST00000560634 ZNF624Q9P2J8 865 aaPredicted RBP13.42□□□□□ -0.26
CSPG4P11-201ENST00000560634 RTN3O95197 1032 aaPredicted RBP13.41□□□□□ -0.26
CSPG4P11-201ENST00000560634 ECDO95905 644 aaPredicted RBP13.41□□□□□ -0.26
CSPG4P11-201ENST00000560634 CATP04040 527 aaKnown RBP13.41□□□□□ -0.26
CSPG4P11-201ENST00000560634 CYP2A6P11509 494 aaPredicted RBP13.41□□□□□ -0.26
CSPG4P11-201ENST00000560634 DGKAP23743 735 aa13.41□□□□□ -0.26
CSPG4P11-201ENST00000560634 DRG2P55039 364 aaKnown RBP13.41□□□□□ -0.26
CSPG4P11-201ENST00000560634 NR1H2P55055 460 aa13.41□□□□□ -0.26
CSPG4P11-201ENST00000560634 CDC42P60953 191 aa13.41□□□□□ -0.26
CSPG4P11-201ENST00000560634 CSNK2BP67870 215 aa13.41□□□□□ -0.26
CSPG4P11-201ENST00000560634 MAGEC3Q8TD91 643 aa13.41□□□□□ -0.26
CSPG4P11-201ENST00000560634 SLC16A10Q8TF71 515 aa13.41□□□□□ -0.26
CSPG4P11-201ENST00000560634 USP7Q93009 1102 aa13.41□□□□□ -0.26
CSPG4P11-201ENST00000560634 UBE2E3Q969T4 207 aa13.41□□□□□ -0.26
CSPG4P11-201ENST00000560634 FAM126AQ9BYI3 521 aaPredicted RBP13.41□□□□□ -0.26
CSPG4P11-201ENST00000560634 FRMPD4Q14CM0 1322 aa13.41□□□□□ -0.26
CSPG4P11-201ENST00000560634 CNTNAP2Q9UHC6 1331 aa13.41□□□□□ -0.26
CSPG4P11-201ENST00000560634 MAP2K7O14733 419 aa13.41□□□□□ -0.26
CSPG4P11-201ENST00000560634 MICAL2O94851 1124 aa13.41□□□□□ -0.26
CSPG4P11-201ENST00000560634 NFICP08651 508 aa13.41□□□□□ -0.26
CSPG4P11-201ENST00000560634 ABHD2P08910 425 aa13.41□□□□□ -0.26
CSPG4P11-201ENST00000560634 MRPS22P82650 360 aaKnown RBP13.41□□□□□ -0.26
CSPG4P11-201ENST00000560634 TNK2Q07912 1038 aa13.41□□□□□ -0.26
CSPG4P11-201ENST00000560634 HLA-DQA1Q5Y7H0 255 aa13.41□□□□□ -0.26
CSPG4P11-201ENST00000560634 ARCQ7LC44 396 aa13.41□□□□□ -0.26
CSPG4P11-201ENST00000560634 SAMD7Q7Z3H4 446 aa13.41□□□□□ -0.26
CSPG4P11-201ENST00000560634 GLT6D1Q7Z4J2 308 aa13.41□□□□□ -0.26
CSPG4P11-201ENST00000560634 MSL3Q8N5Y2 521 aaKnown RBP13.41□□□□□ -0.26
CSPG4P11-201ENST00000560634 ZNF513Q8N8E2 541 aaPredicted RBP13.41□□□□□ -0.26
CSPG4P11-201ENST00000560634 FLCNQ8NFG4 579 aa13.41□□□□□ -0.26
CSPG4P11-201ENST00000560634 EDEM1Q92611 657 aa13.41□□□□□ -0.26
CSPG4P11-201ENST00000560634 VMP1Q96GC9 406 aa13.41□□□□□ -0.26
CSPG4P11-201ENST00000560634 LRMDAQ9H2I8 198 aa13.41□□□□□ -0.26
CSPG4P11-201ENST00000560634 PSME2Q9UL46 239 aa13.41□□□□□ -0.26
CSPG4P11-201ENST00000560634 EN1Q05925 392 aaPredicted RBP13.41□□□□□ -0.26
CSPG4P11-201ENST00000560634 BROXQ5VW32 411 aa13.41□□□□□ -0.26
CSPG4P11-201ENST00000560634 DNAJC14Q6Y2X3 702 aaPredicted RBP13.41□□□□□ -0.26
CSPG4P11-201ENST00000560634 MREGQ8N565 214 aa13.41□□□□□ -0.26
CSPG4P11-201ENST00000560634 OR7A2PQ8NGA2 310 aa13.41□□□□□ -0.26
CSPG4P11-201ENST00000560634 ZNF671Q8TAW3 534 aa13.41□□□□□ -0.26
CSPG4P11-201ENST00000560634 NEK6Q9HC98 313 aa13.41□□□□□ -0.26
CSPG4P11-201ENST00000560634 RPS6KA6Q9UK32 745 aa13.41□□□□□ -0.26
CSPG4P11-201ENST00000560634 KCNH1O95259 989 aa13.41□□□□□ -0.26
CSPG4P11-201ENST00000560634 BOP1Q14137 746 aaKnown RBP13.41□□□□□ -0.26
CSPG4P11-201ENST00000560634 PCID2Q5JVF3 399 aa13.41□□□□□ -0.26
CSPG4P11-201ENST00000560634 PRMT6Q96LA8 375 aaPredicted RBP13.41□□□□□ -0.26
CSPG4P11-201ENST00000560634 PNMA5Q96PV4 448 aa13.41□□□□□ -0.26
CSPG4P11-201ENST00000560634 BCORL1Q5H9F3 1711 aa13.4□□□□□ -0.26
CSPG4P11-201ENST00000560634 SNAP91O60641 907 aa13.4□□□□□ -0.26
CSPG4P11-201ENST00000560634 INSRRP14616 1297 aa13.4□□□□□ -0.26
CSPG4P11-201ENST00000560634 TYMPP19971 482 aa13.4□□□□□ -0.26
CSPG4P11-201ENST00000560634 ADSSP30520 456 aa13.4□□□□□ -0.26
CSPG4P11-201ENST00000560634 RGS21Q2M5E4 152 aa13.4□□□□□ -0.26
CSPG4P11-201ENST00000560634 PAN2Q504Q3 1202 aaKnown RBP13.4□□□□□ -0.26
CSPG4P11-201ENST00000560634 IL27RAQ6UWB1 636 aa13.4□□□□□ -0.26
CSPG4P11-201ENST00000560634 PSTKQ8IV42 348 aaKnown RBP13.4□□□□□ -0.26
CSPG4P11-201ENST00000560634 Q96MT0 163 aa13.4□□□□□ -0.26
CSPG4P11-201ENST00000560634 POLR1EQ9GZS1 481 aaKnown RBP13.4□□□□□ -0.26
CSPG4P11-201ENST00000560634 POPDC2Q9HBU9 364 aa13.4□□□□□ -0.26
CSPG4P11-201ENST00000560634 KCND1Q9NSA2 647 aa13.4□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms