RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 CCDC130P13994 396 aa11.56□□□□□ -0.56
LDLR-208ENST00000558518 CTBP1Q13363 440 aa11.56□□□□□ -0.56
LDLR-208ENST00000558518 OGFOD2Q6N063 350 aa11.56□□□□□ -0.56
LDLR-208ENST00000558518 ZNF534Q76KX8 674 aa11.56□□□□□ -0.56
LDLR-208ENST00000558518 OR9I1Q8NGQ6 314 aa11.56□□□□□ -0.56
LDLR-208ENST00000558518 PLEKHG4BQ96PX9 1271 aa11.56□□□□□ -0.56
LDLR-208ENST00000558518 ACO2Q99798 780 aaKnown RBP11.56□□□□□ -0.56
LDLR-208ENST00000558518 SLC29A1Q99808 456 aa11.56□□□□□ -0.56
LDLR-208ENST00000558518 XYLT2Q9H1B5 865 aa11.56□□□□□ -0.56
LDLR-208ENST00000558518 MINDY3Q9H8M7 445 aa11.56□□□□□ -0.56
LDLR-208ENST00000558518 EFCAB1Q9HAE3 211 aa11.56□□□□□ -0.56
LDLR-208ENST00000558518 DNAJB4Q9UDY4 337 aa11.56□□□□□ -0.56
LDLR-208ENST00000558518 CDC14AQ9UNH5 594 aa11.56□□□□□ -0.56
LDLR-208ENST00000558518 AP4S1Q9Y587 144 aa11.56□□□□□ -0.56
LDLR-208ENST00000558518 DNAH12Q6ZR08 3092 aa11.55□□□□□ -0.56
LDLR-208ENST00000558518 NRP1O14786 923 aa11.55□□□□□ -0.56
LDLR-208ENST00000558518 STBD1O95210 358 aa11.55□□□□□ -0.56
LDLR-208ENST00000558518 VTNP04004 478 aa11.55□□□□□ -0.56
LDLR-208ENST00000558518 STAG3L1P0CL83 205 aa11.55□□□□□ -0.56
LDLR-208ENST00000558518 TFEBP19484 476 aa11.55□□□□□ -0.56
LDLR-208ENST00000558518 GP5P40197 560 aa11.55□□□□□ -0.56
LDLR-208ENST00000558518 GRIA3P42263 894 aa11.55□□□□□ -0.56
LDLR-208ENST00000558518 DPP6P42658 865 aa11.55□□□□□ -0.56
LDLR-208ENST00000558518 PLCL1Q15111 1095 aa11.55□□□□□ -0.56
LDLR-208ENST00000558518 KIF19Q2TAC6 998 aa11.55□□□□□ -0.56
LDLR-208ENST00000558518 FBXO48Q5FWF7 155 aa11.55□□□□□ -0.56
LDLR-208ENST00000558518 GJC2Q5T442 439 aaPredicted RBP11.55□□□□□ -0.56
LDLR-208ENST00000558518 OGFRL1Q5TC84 451 aaPredicted RBP11.55□□□□□ -0.56
LDLR-208ENST00000558518 RSBN1LQ6PCB5 846 aaPredicted RBP11.55□□□□□ -0.56
LDLR-208ENST00000558518 PGM2L1Q6PCE3 622 aa11.55□□□□□ -0.56
LDLR-208ENST00000558518 ZFRQ96KR1 1074 aaKnown RBP11.55□□□□□ -0.56
LDLR-208ENST00000558518 SENP6Q9GZR1 1112 aaPredicted RBP11.55□□□□□ -0.56
LDLR-208ENST00000558518 SELENONQ9NZV5 590 aa11.55□□□□□ -0.56
LDLR-208ENST00000558518 C6orf203Q9P0P8 240 aaPredicted RBP11.55□□□□□ -0.56
LDLR-208ENST00000558518 ZBBXA8MT70 800 aa11.55□□□□□ -0.56
LDLR-208ENST00000558518 MFSD11O43934 449 aa11.55□□□□□ -0.56
LDLR-208ENST00000558518 FBXO21O94952 628 aa11.55□□□□□ -0.56
LDLR-208ENST00000558518 SPRP35270 261 aaPredicted RBP11.55□□□□□ -0.56
LDLR-208ENST00000558518 NDST2P52849 883 aa11.55□□□□□ -0.56
LDLR-208ENST00000558518 PITX1P78337 314 aaPredicted RBP11.55□□□□□ -0.56
LDLR-208ENST00000558518 PHEXP78562 749 aa11.55□□□□□ -0.56
LDLR-208ENST00000558518 ZNF410Q86VK4 478 aa11.55□□□□□ -0.56
LDLR-208ENST00000558518 SLC41A1Q8IVJ1 513 aa11.55□□□□□ -0.56
LDLR-208ENST00000558518 RIN3Q8TB24 985 aa11.55□□□□□ -0.56
LDLR-208ENST00000558518 URGCPQ8TCY9 931 aa11.55□□□□□ -0.56
LDLR-208ENST00000558518 COPS5Q92905 334 aa11.55□□□□□ -0.56
LDLR-208ENST00000558518 P2RY11Q96G91 374 aa11.55□□□□□ -0.56
LDLR-208ENST00000558518 CELF6Q96J87 481 aaKnown RBP11.55□□□□□ -0.56
LDLR-208ENST00000558518 FCRL3Q96P31 734 aaPredicted RBP11.55□□□□□ -0.56
LDLR-208ENST00000558518 BTBD9Q96Q07 612 aa11.55□□□□□ -0.56
LDLR-208ENST00000558518 RTKNQ9BST9 563 aa11.55□□□□□ -0.56
LDLR-208ENST00000558518 HAUS8Q9BT25 410 aa11.55□□□□□ -0.56
LDLR-208ENST00000558518 ACE2Q9BYF1 805 aaPredicted RBP11.55□□□□□ -0.56
LDLR-208ENST00000558518 GCOM2Q9BZD3 368 aaPredicted RBP11.55□□□□□ -0.56
LDLR-208ENST00000558518 PRDM12Q9H4Q4 367 aa11.55□□□□□ -0.56
LDLR-208ENST00000558518 DTLQ9NZJ0 730 aa11.55□□□□□ -0.56
LDLR-208ENST00000558518 BFARQ9NZS9 450 aa11.55□□□□□ -0.56
LDLR-208ENST00000558518 THEGQ9P2T0 379 aa11.55□□□□□ -0.56
LDLR-208ENST00000558518 SIX4Q9UIU6 781 aa11.55□□□□□ -0.56
LDLR-208ENST00000558518 PAIP2BQ9ULR5 123 aaKnown RBP11.55□□□□□ -0.56
LDLR-208ENST00000558518 C7orf72A4D263 438 aa11.55□□□□□ -0.56
LDLR-208ENST00000558518 PGK2P07205 417 aa11.55□□□□□ -0.56
LDLR-208ENST00000558518 GNAO1P09471 354 aa11.55□□□□□ -0.56
LDLR-208ENST00000558518 GPR141Q7Z602 305 aa11.55□□□□□ -0.56
LDLR-208ENST00000558518 PATL1Q86TB9 770 aaKnown RBP11.55□□□□□ -0.56
LDLR-208ENST00000558518 HERC6Q8IVU3 1022 aa11.55□□□□□ -0.56
LDLR-208ENST00000558518 PDZD8Q8NEN9 1154 aa11.55□□□□□ -0.56
LDLR-208ENST00000558518 EFR3BQ9Y2G0 817 aa11.55□□□□□ -0.56
LDLR-208ENST00000558518 DOCK5Q9H7D0 1870 aa11.54□□□□□ -0.56
LDLR-208ENST00000558518 GPR25O00155 361 aa11.54□□□□□ -0.56
LDLR-208ENST00000558518 WNT10BO00744 389 aa11.54□□□□□ -0.56
LDLR-208ENST00000558518 GSRP00390 522 aa11.54□□□□□ -0.56
LDLR-208ENST00000558518 CDH2P19022 906 aaPredicted RBP11.54□□□□□ -0.56
LDLR-208ENST00000558518 PTPN7P35236 360 aa11.54□□□□□ -0.56
LDLR-208ENST00000558518 CXCR3P49682 368 aa11.54□□□□□ -0.56
LDLR-208ENST00000558518 MPP3Q13368 585 aa11.54□□□□□ -0.56
LDLR-208ENST00000558518 POU6F1Q14863 301 aa11.54□□□□□ -0.56
LDLR-208ENST00000558518 FUT11Q495W5 492 aa11.54□□□□□ -0.56
LDLR-208ENST00000558518 NBPF12Q5TAG4 269 aaPredicted RBP11.54□□□□□ -0.56
LDLR-208ENST00000558518 EFCAB12Q6NXP0 572 aa11.54□□□□□ -0.56
LDLR-208ENST00000558518 CTU1Q7Z7A3 348 aaKnown RBP11.54□□□□□ -0.56
LDLR-208ENST00000558518 ZNF554Q86TJ5 538 aa11.54□□□□□ -0.56
LDLR-208ENST00000558518 NCSTNQ92542 709 aa11.54□□□□□ -0.56
LDLR-208ENST00000558518 LPGAT1Q92604 370 aa11.54□□□□□ -0.56
LDLR-208ENST00000558518 CNDP1Q96KN2 507 aa11.54□□□□□ -0.56
LDLR-208ENST00000558518 NT5C1AQ9BXI3 368 aa11.54□□□□□ -0.56
LDLR-208ENST00000558518 FRMD8P1Q9BZ68 369 aaPredicted RBP11.54□□□□□ -0.56
LDLR-208ENST00000558518 TUT1Q9H6E5 874 aaKnown RBP11.54□□□□□ -0.56
LDLR-208ENST00000558518 DHX33Q9H6R0 707 aaKnown RBP11.54□□□□□ -0.56
LDLR-208ENST00000558518 PCDHGC3Q9UN70 934 aa11.54□□□□□ -0.56
LDLR-208ENST00000558518 MYRFQ9Y2G1 1151 aa11.54□□□□□ -0.56
LDLR-208ENST00000558518 E7ENX8 843 aa11.54□□□□□ -0.56
LDLR-208ENST00000558518 MSCO60682 206 aa11.54□□□□□ -0.56
LDLR-208ENST00000558518 C1QAP02745 245 aa11.54□□□□□ -0.56
LDLR-208ENST00000558518 CYP3A5P20815 502 aa11.54□□□□□ -0.56
LDLR-208ENST00000558518 RPL14P50914 215 aaKnown RBP11.54□□□□□ -0.56
LDLR-208ENST00000558518 TMEM132BQ14DG7 1078 aa11.54□□□□□ -0.56
LDLR-208ENST00000558518 ZIK1Q3SY52 487 aaPredicted RBP11.54□□□□□ -0.56
LDLR-208ENST00000558518 EMID1Q96A84 441 aaPredicted RBP11.54□□□□□ -0.56
LDLR-208ENST00000558518 KCTD15Q96SI1 283 aaPredicted RBP11.54□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms