RNA–Protein interactions for RNA: ENST00000557548.1

TRAV28-201, Transcript of T cell receptor alpha variable 28 (pseudogene), humanhuman

BASIC

Gene TRAV28, Length 323 nt, Biotype TR V pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV28-201ENST00000557548 C2CD4CQ8TF44 421 aa3.37□□□□□ -1.87
TRAV28-201ENST00000557548 AKAP1Q92667 903 aaKnown RBP eCLIP3.37□□□□□ -1.87
TRAV28-201ENST00000557548 JAKMIP2Q96AA8 810 aa3.37□□□□□ -1.87
TRAV28-201ENST00000557548 LOXL4Q96JB6 756 aa3.37□□□□□ -1.87
TRAV28-201ENST00000557548 NPLQ9BXD5 320 aaPredicted RBP3.37□□□□□ -1.87
TRAV28-201ENST00000557548 SMARCAD1Q9H4L7 1026 aa3.37□□□□□ -1.87
TRAV28-201ENST00000557548 KAT14Q9H8E8 782 aa3.37□□□□□ -1.87
TRAV28-201ENST00000557548 PDE7BQ9NP56 450 aa3.37□□□□□ -1.87
TRAV28-201ENST00000557548 CCDC177Q9NQR7 707 aaPredicted RBP3.37□□□□□ -1.87
TRAV28-201ENST00000557548 IL1RAPL1Q9NZN1 696 aa3.37□□□□□ -1.87
TRAV28-201ENST00000557548 EHD3Q9NZN3 535 aa3.37□□□□□ -1.87
TRAV28-201ENST00000557548 EHD2Q9NZN4 543 aa3.37□□□□□ -1.87
TRAV28-201ENST00000557548 AMFRQ9UKV5 643 aa3.37□□□□□ -1.87
TRAV28-201ENST00000557548 MKLN1Q9UL63 735 aa3.37□□□□□ -1.87
TRAV28-201ENST00000557548 B3GNT3Q9Y2A9 372 aa3.37□□□□□ -1.87
TRAV28-201ENST00000557548 MYRFQ9Y2G1 1151 aa3.37□□□□□ -1.87
TRAV28-201ENST00000557548 PASKQ96RG2 1323 aa3.37□□□□□ -1.87
TRAV28-201ENST00000557548 FAM170AA1A519 330 aa3.36□□□□□ -1.87
TRAV28-201ENST00000557548 KRTAP23-1A1A580 65 aa3.36□□□□□ -1.87
TRAV28-201ENST00000557548 C16orf96A6NNT2 1141 aa3.36□□□□□ -1.87
TRAV28-201ENST00000557548 C17orf100A8MU93 164 aa3.36□□□□□ -1.87
TRAV28-201ENST00000557548 MYO1GB0I1T2 1018 aa3.36□□□□□ -1.87
TRAV28-201ENST00000557548 PATE3B3GLJ2 98 aa3.36□□□□□ -1.87
TRAV28-201ENST00000557548 GCOM1H8Y6P7 765 aaPredicted RBP3.36□□□□□ -1.87
TRAV28-201ENST00000557548 SH2B2O14492 632 aaPredicted RBP3.36□□□□□ -1.87
TRAV28-201ENST00000557548 PROM1O43490 865 aa3.36□□□□□ -1.87
TRAV28-201ENST00000557548 HBP1O60381 514 aa3.36□□□□□ -1.87
TRAV28-201ENST00000557548 CCNT1O60563 726 aaKnown RBP3.36□□□□□ -1.87
TRAV28-201ENST00000557548 NXPH3O95157 252 aa3.36□□□□□ -1.87
TRAV28-201ENST00000557548 PLATP00750 562 aa3.36□□□□□ -1.87
TRAV28-201ENST00000557548 CHRM4P08173 479 aa3.36□□□□□ -1.87
TRAV28-201ENST00000557548 DLDP09622 509 aaKnown RBP3.36□□□□□ -1.87
TRAV28-201ENST00000557548 ALDOCP09972 364 aaKnown RBP3.36□□□□□ -1.87
TRAV28-201ENST00000557548 NR2F6P10588 404 aa3.36□□□□□ -1.87
TRAV28-201ENST00000557548 INSRRP14616 1297 aa3.36□□□□□ -1.87
TRAV28-201ENST00000557548 PKMP14618 531 aaKnown RBP3.36□□□□□ -1.87
TRAV28-201ENST00000557548 ENGP17813 658 aa3.36□□□□□ -1.87
TRAV28-201ENST00000557548 FPR3P25089 353 aa3.36□□□□□ -1.87
TRAV28-201ENST00000557548 MCM3P25205 808 aa3.36□□□□□ -1.87
TRAV28-201ENST00000557548 ZFP36P26651 326 aaKnown RBP3.36□□□□□ -1.87
TRAV28-201ENST00000557548 NDUFS1P28331 727 aa3.36□□□□□ -1.87
TRAV28-201ENST00000557548 DUSP1P28562 367 aa3.36□□□□□ -1.87
TRAV28-201ENST00000557548 PCSK6P29122 969 aa3.36□□□□□ -1.87
TRAV28-201ENST00000557548 STAT6P42226 847 aa3.36□□□□□ -1.87
TRAV28-201ENST00000557548 PTPN9P43378 593 aa3.36□□□□□ -1.87
TRAV28-201ENST00000557548 EFNA5P52803 228 aa3.36□□□□□ -1.87
TRAV28-201ENST00000557548 CEBPZQ03701 1054 aaKnown RBP3.36□□□□□ -1.87
TRAV28-201ENST00000557548 GOLGA8DPQ0D2H9 430 aa3.36□□□□□ -1.87
TRAV28-201ENST00000557548 ABHD18Q0P651 414 aa3.36□□□□□ -1.87
TRAV28-201ENST00000557548 LMAN2Q12907 356 aa3.36□□□□□ -1.87
TRAV28-201ENST00000557548 GAB1Q13480 694 aa3.36□□□□□ -1.87
TRAV28-201ENST00000557548 TP53BP2Q13625 1128 aa3.36□□□□□ -1.87
TRAV28-201ENST00000557548 IRF3Q14653 427 aa3.36□□□□□ -1.87
TRAV28-201ENST00000557548 GPR162Q16538 588 aa3.36□□□□□ -1.87
TRAV28-201ENST00000557548 FBXO43Q4G163 708 aa3.36□□□□□ -1.87
TRAV28-201ENST00000557548 DENND2CQ68D51 928 aa3.36□□□□□ -1.87
TRAV28-201ENST00000557548 ARMC6Q6NXE6 501 aa3.36□□□□□ -1.87
TRAV28-201ENST00000557548 TMEM154Q6P9G4 183 aa3.36□□□□□ -1.87
TRAV28-201ENST00000557548 VWA1Q6PCB0 445 aa3.36□□□□□ -1.87
TRAV28-201ENST00000557548 GJB7Q6PEY0 223 aa3.36□□□□□ -1.87
TRAV28-201ENST00000557548 KIRREL2Q6UWL6 708 aa3.36□□□□□ -1.87
TRAV28-201ENST00000557548 CRELD2Q6UXH1 353 aaPredicted RBP3.36□□□□□ -1.87
TRAV28-201ENST00000557548 SLC46A3Q7Z3Q1 461 aa3.36□□□□□ -1.87
TRAV28-201ENST00000557548 GPR149Q86SP6 731 aa3.36□□□□□ -1.87
TRAV28-201ENST00000557548 LAS2Q8IYD9 372 aa3.36□□□□□ -1.87
TRAV28-201ENST00000557548 SCML4Q8N228 414 aa3.36□□□□□ -1.87
TRAV28-201ENST00000557548 TMEM116Q8NCL8 245 aa3.36□□□□□ -1.87
TRAV28-201ENST00000557548 FEZF2Q8TBJ5 459 aa3.36□□□□□ -1.87
TRAV28-201ENST00000557548 Q8TCH9 128 aa3.36□□□□□ -1.87
TRAV28-201ENST00000557548 ARHGEF2Q92974 986 aaKnown RBP3.36□□□□□ -1.87
TRAV28-201ENST00000557548 ATP6V1E2Q96A05 226 aa3.36□□□□□ -1.87
TRAV28-201ENST00000557548 FBXL20Q96IG2 436 aa3.36□□□□□ -1.87
TRAV28-201ENST00000557548 CMTM3Q96MX0 182 aa3.36□□□□□ -1.87
TRAV28-201ENST00000557548 WDFY2Q96P53 400 aa3.36□□□□□ -1.87
TRAV28-201ENST00000557548 GPR78Q96P69 363 aa3.36□□□□□ -1.87
TRAV28-201ENST00000557548 SNX18Q96RF0 628 aa3.36□□□□□ -1.87
TRAV28-201ENST00000557548 ALG8Q9BVK2 526 aa3.36□□□□□ -1.87
TRAV28-201ENST00000557548 KLC2Q9H0B6 622 aa3.36□□□□□ -1.87
TRAV28-201ENST00000557548 SH2D4AQ9H788 454 aa3.36□□□□□ -1.87
TRAV28-201ENST00000557548 POLR1BQ9H9Y6 1135 aa3.36□□□□□ -1.87
TRAV28-201ENST00000557548 SCPEP1Q9HB40 452 aa3.36□□□□□ -1.87
TRAV28-201ENST00000557548 KLC4Q9NSK0 619 aa3.36□□□□□ -1.87
TRAV28-201ENST00000557548 UPB1Q9UBR1 384 aa3.36□□□□□ -1.87
TRAV28-201ENST00000557548 HSPB7Q9UBY9 170 aa3.36□□□□□ -1.87
TRAV28-201ENST00000557548 SH2B3Q9UQQ2 575 aa3.36□□□□□ -1.87
TRAV28-201ENST00000557548 ADAM18Q9Y3Q7 739 aa3.36□□□□□ -1.87
TRAV28-201ENST00000557548 CAPN7Q9Y6W3 813 aa3.36□□□□□ -1.87
TRAV28-201ENST00000557548 FRMD3A2A2Y4 597 aa3.35□□□□□ -1.87
TRAV28-201ENST00000557548 IFNL4K9M1U5 179 aa3.35□□□□□ -1.87
TRAV28-201ENST00000557548 UBE2CO00762 179 aa3.35□□□□□ -1.87
TRAV28-201ENST00000557548 DSCR3O14972 297 aa3.35□□□□□ -1.87
TRAV28-201ENST00000557548 BCAT2O15382 392 aaPredicted RBP3.35□□□□□ -1.87
TRAV28-201ENST00000557548 YY2O15391 372 aa3.35□□□□□ -1.87
TRAV28-201ENST00000557548 ADAM20O43506 726 aa3.35□□□□□ -1.87
TRAV28-201ENST00000557548 LPXNO60711 386 aa3.35□□□□□ -1.87
TRAV28-201ENST00000557548 ENTPD3O75355 529 aa3.35□□□□□ -1.87
TRAV28-201ENST00000557548 SEC31AO94979 1220 aaKnown RBP3.35□□□□□ -1.87
TRAV28-201ENST00000557548 GALTP07902 379 aa3.35□□□□□ -1.87
TRAV28-201ENST00000557548 C1SP09871 688 aa3.35□□□□□ -1.87
TRAV28-201ENST00000557548 ZFXP17010 805 aaPredicted RBP3.35□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 68.5 ms