RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 SCINQ9Y6U3 715 aa14.09□□□□□ -0.15
SHMT2-219ENST00000555563 RALGAPA1Q6GYQ0 2036 aa14.08□□□□□ -0.15
SHMT2-219ENST00000555563 A0A087X0T9 212 aa14.08□□□□□ -0.16
SHMT2-219ENST00000555563 A0A0D9SEW6 157 aa14.08□□□□□ -0.16
SHMT2-219ENST00000555563 EDDM13A0A1B0GTR0 161 aa14.08□□□□□ -0.16
SHMT2-219ENST00000555563 MED19A0JLT2 244 aaPredicted RBP14.08□□□□□ -0.16
SHMT2-219ENST00000555563 TMEM191CA6NGB0 347 aa14.08□□□□□ -0.16
SHMT2-219ENST00000555563 AP5Z1O43299 807 aa14.08□□□□□ -0.16
SHMT2-219ENST00000555563 SNAP91O60641 907 aa14.08□□□□□ -0.16
SHMT2-219ENST00000555563 IGLV3-19P01714 112 aa14.08□□□□□ -0.16
SHMT2-219ENST00000555563 FAM228BP0C875 321 aa14.08□□□□□ -0.16
SHMT2-219ENST00000555563 MYBL1P10243 752 aa14.08□□□□□ -0.16
SHMT2-219ENST00000555563 C7P10643 843 aa14.08□□□□□ -0.16
SHMT2-219ENST00000555563 ACADMP11310 421 aa14.08□□□□□ -0.16
SHMT2-219ENST00000555563 VAV1P15498 845 aa14.08□□□□□ -0.16
SHMT2-219ENST00000555563 DESP17661 470 aa14.08□□□□□ -0.16
SHMT2-219ENST00000555563 CD6P30203 668 aa14.08□□□□□ -0.16
SHMT2-219ENST00000555563 HNRNPH3P31942 346 aaKnown RBP14.08□□□□□ -0.16
SHMT2-219ENST00000555563 SF3A2Q15428 464 aaKnown RBP14.08□□□□□ -0.16
SHMT2-219ENST00000555563 EFHC2Q5JST6 749 aa14.08□□□□□ -0.16
SHMT2-219ENST00000555563 C9orf64Q5T6V5 341 aa14.08□□□□□ -0.16
SHMT2-219ENST00000555563 LYSMD4Q5XG99 296 aa14.08□□□□□ -0.16
SHMT2-219ENST00000555563 ZNF776Q68DI1 518 aaPredicted RBP14.08□□□□□ -0.16
SHMT2-219ENST00000555563 TCEAL6Q6IPX3 200 aa14.08□□□□□ -0.16
SHMT2-219ENST00000555563 RWDD4Q6NW29 188 aaKnown RBP14.08□□□□□ -0.16
SHMT2-219ENST00000555563 SCYL2Q6P3W7 929 aa14.08□□□□□ -0.16
SHMT2-219ENST00000555563 DRC7Q8IY82 874 aa14.08□□□□□ -0.16
SHMT2-219ENST00000555563 PYROXD2Q8N2H3 581 aa14.08□□□□□ -0.16
SHMT2-219ENST00000555563 DEFB119Q8N690 84 aa14.08□□□□□ -0.16
SHMT2-219ENST00000555563 DCAF4L2Q8NA75 395 aa14.08□□□□□ -0.16
SHMT2-219ENST00000555563 OR7D4Q8NG98 312 aa14.08□□□□□ -0.16
SHMT2-219ENST00000555563 TCEAL3Q969E4 200 aa14.08□□□□□ -0.16
SHMT2-219ENST00000555563 TBC1D31Q96DN5 1066 aa14.08□□□□□ -0.16
SHMT2-219ENST00000555563 PPP1R9BQ96SB3 815 aa14.08□□□□□ -0.16
SHMT2-219ENST00000555563 RSPH9Q9H1X1 276 aaPredicted RBP14.08□□□□□ -0.16
SHMT2-219ENST00000555563 ITM2CQ9NQX7 267 aa14.08□□□□□ -0.16
SHMT2-219ENST00000555563 MYO1AQ9UBC5 1043 aa14.08□□□□□ -0.16
SHMT2-219ENST00000555563 VPS51Q9UID3 782 aa14.08□□□□□ -0.16
SHMT2-219ENST00000555563 SLC25A13Q9UJS0 675 aa14.08□□□□□ -0.16
SHMT2-219ENST00000555563 NUP205Q92621 2012 aa14.08□□□□□ -0.16
SHMT2-219ENST00000555563 ATXN2Q99700 1313 aaKnown RBP14.08□□□□□ -0.16
SHMT2-219ENST00000555563 DMXL1Q9Y485 3027 aa14.08□□□□□ -0.16
SHMT2-219ENST00000555563 CEP192Q8TEP8 1941 aa14.07□□□□□ -0.16
SHMT2-219ENST00000555563 SDK1Q7Z5N4 2213 aa14.07□□□□□ -0.16
SHMT2-219ENST00000555563 NDUFS2O75306 463 aa14.07□□□□□ -0.16
SHMT2-219ENST00000555563 ZNF806P0C7X5 589 aa14.07□□□□□ -0.16
SHMT2-219ENST00000555563 NNMTP40261 264 aa14.07□□□□□ -0.16
SHMT2-219ENST00000555563 SPDYCQ5MJ68 293 aa14.07□□□□□ -0.16
SHMT2-219ENST00000555563 FAM124AQ86V42 546 aa14.07□□□□□ -0.16
SHMT2-219ENST00000555563 NLRP14Q86W24 1093 aa14.07□□□□□ -0.16
SHMT2-219ENST00000555563 SLC41A1Q8IVJ1 513 aa14.07□□□□□ -0.16
SHMT2-219ENST00000555563 FNIP1Q8TF40 1166 aa14.07□□□□□ -0.16
SHMT2-219ENST00000555563 FRS2Q8WU20 508 aa14.07□□□□□ -0.16
SHMT2-219ENST00000555563 PIGKQ92643 395 aa14.07□□□□□ -0.16
SHMT2-219ENST00000555563 PTPRN2Q92932 1015 aa14.07□□□□□ -0.16
SHMT2-219ENST00000555563 TOE1Q96GM8 510 aaKnown RBP14.07□□□□□ -0.16
SHMT2-219ENST00000555563 HSPA12BQ96MM6 686 aa14.07□□□□□ -0.16
SHMT2-219ENST00000555563 DNAJC7Q99615 494 aa14.07□□□□□ -0.16
SHMT2-219ENST00000555563 C2orf49Q9BVC5 232 aaPredicted RBP14.07□□□□□ -0.16
SHMT2-219ENST00000555563 THAP2Q9H0W7 228 aa14.07□□□□□ -0.16
SHMT2-219ENST00000555563 VPS45Q9NRW7 570 aa14.07□□□□□ -0.16
SHMT2-219ENST00000555563 WSB2Q9NYS7 404 aaPredicted RBP14.07□□□□□ -0.16
SHMT2-219ENST00000555563 FZD10Q9ULW2 581 aa14.07□□□□□ -0.16
SHMT2-219ENST00000555563 NENFQ9UMX5 172 aa14.07□□□□□ -0.16
SHMT2-219ENST00000555563 HS3ST2Q9Y278 367 aa14.07□□□□□ -0.16
SHMT2-219ENST00000555563 FRYLO94915 3013 aa14.07□□□□□ -0.16
SHMT2-219ENST00000555563 WDR87Q6ZQQ6 2873 aa14.06□□□□□ -0.16
SHMT2-219ENST00000555563 ILVBLA1L0T0 632 aa14.06□□□□□ -0.16
SHMT2-219ENST00000555563 TARSL2A2RTX5 802 aaKnown RBP14.06□□□□□ -0.16
SHMT2-219ENST00000555563 ATP9BO43861 1147 aa14.06□□□□□ -0.16
SHMT2-219ENST00000555563 MFAP3LO75121 409 aa14.06□□□□□ -0.16
SHMT2-219ENST00000555563 DNTTP04053 509 aa14.06□□□□□ -0.16
SHMT2-219ENST00000555563 RHOQP17081 205 aa14.06□□□□□ -0.16
SHMT2-219ENST00000555563 GLDCP23378 1020 aa14.06□□□□□ -0.16
SHMT2-219ENST00000555563 ITPKAP23677 461 aa14.06□□□□□ -0.16
SHMT2-219ENST00000555563 L1CAMP32004 1257 aa14.06□□□□□ -0.16
SHMT2-219ENST00000555563 EIF4A3P38919 411 aaKnown RBP14.06□□□□□ -0.16
SHMT2-219ENST00000555563 MAPKAPK2P49137 400 aa14.06□□□□□ -0.16
SHMT2-219ENST00000555563 VASPP50552 380 aaPredicted RBP14.06□□□□□ -0.16
SHMT2-219ENST00000555563 AIF1P55008 147 aa14.06□□□□□ -0.16
SHMT2-219ENST00000555563 KRT83P78385 493 aa14.06□□□□□ -0.16
SHMT2-219ENST00000555563 GNA12Q03113 381 aa14.06□□□□□ -0.16
SHMT2-219ENST00000555563 ZBTB16Q05516 673 aa14.06□□□□□ -0.16
SHMT2-219ENST00000555563 ZNF33AQ06730 810 aa14.06□□□□□ -0.16
SHMT2-219ENST00000555563 SEMA3BQ13214 749 aa14.06□□□□□ -0.16
SHMT2-219ENST00000555563 ELAVL3Q14576 367 aaKnown RBP14.06□□□□□ -0.16
SHMT2-219ENST00000555563 TTC31Q49AM3 519 aaPredicted RBP14.06□□□□□ -0.16
SHMT2-219ENST00000555563 ALKBH5Q6P6C2 394 aaKnown RBP14.06□□□□□ -0.16
SHMT2-219ENST00000555563 SARM1Q6SZW1 724 aa14.06□□□□□ -0.16
SHMT2-219ENST00000555563 LINGO4Q6UY18 593 aa14.06□□□□□ -0.16
SHMT2-219ENST00000555563 ZNF783Q6ZMS7 281 aa14.06□□□□□ -0.16
SHMT2-219ENST00000555563 Q6ZVU0 165 aa14.06□□□□□ -0.16
SHMT2-219ENST00000555563 MMAAQ8IVH4 418 aaKnown RBP14.06□□□□□ -0.16
SHMT2-219ENST00000555563 STK40Q8N2I9 435 aa14.06□□□□□ -0.16
SHMT2-219ENST00000555563 SH2D3CQ8N5H7 860 aa14.06□□□□□ -0.16
SHMT2-219ENST00000555563 ARFGAP1Q8N6T3 406 aa14.06□□□□□ -0.16
SHMT2-219ENST00000555563 C12orf50Q8NA57 414 aaPredicted RBP14.06□□□□□ -0.16
SHMT2-219ENST00000555563 PEBP4Q96S96 227 aa14.06□□□□□ -0.16
SHMT2-219ENST00000555563 PABPC3Q9H361 631 aaKnown RBP14.06□□□□□ -0.16
SHMT2-219ENST00000555563 MRPL47Q9HD33 250 aaKnown RBP14.06□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms