RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 POPDC2Q9HBU9 364 aa8.74□□□□□ -1.01
USP28-215ENST00000545608 SLTMQ9NWH9 1034 aaKnown RBP eCLIP8.74□□□□□ -1.01
USP28-215ENST00000545608 SCML1Q9UN30 329 aa8.74□□□□□ -1.01
USP28-215ENST00000545608 ITIH6Q6UXX5 1313 aa8.74□□□□□ -1.01
USP28-215ENST00000545608 CABIN1Q9Y6J0 2220 aa8.73□□□□□ -1.01
USP28-215ENST00000545608 CHD6Q8TD26 2715 aa8.73□□□□□ -1.01
USP28-215ENST00000545608 SYNJ2BP-COX16A0A087WUM0 186 aa8.73□□□□□ -1.01
USP28-215ENST00000545608 EDDM13A0A1B0GTR0 161 aa8.73□□□□□ -1.01
USP28-215ENST00000545608 KCNU1A8MYU2 1149 aa8.73□□□□□ -1.01
USP28-215ENST00000545608 F5H5T6 163 aa8.73□□□□□ -1.01
USP28-215ENST00000545608 VILLO15195 856 aa8.73□□□□□ -1.01
USP28-215ENST00000545608 PCDHGA12O60330 932 aa8.73□□□□□ -1.01
USP28-215ENST00000545608 GRAP2O75791 330 aa8.73□□□□□ -1.01
USP28-215ENST00000545608 RNASEH2AO75792 299 aaKnown RBP8.73□□□□□ -1.01
USP28-215ENST00000545608 MOCS3O95396 460 aa8.73□□□□□ -1.01
USP28-215ENST00000545608 FGFR1OPO95684 399 aaKnown RBP8.73□□□□□ -1.01
USP28-215ENST00000545608 VAV1P15498 845 aa8.73□□□□□ -1.01
USP28-215ENST00000545608 PDGFRAP16234 1089 aa8.73□□□□□ -1.01
USP28-215ENST00000545608 USP8P40818 1118 aa8.73□□□□□ -1.01
USP28-215ENST00000545608 PSMD8P48556 350 aa8.73□□□□□ -1.01
USP28-215ENST00000545608 CCT8P50990 548 aa8.73□□□□□ -1.01
USP28-215ENST00000545608 RACK1P63244 317 aaKnown RBP8.73□□□□□ -1.01
USP28-215ENST00000545608 PDCLQ13371 301 aa8.73□□□□□ -1.01
USP28-215ENST00000545608 KCNJ12Q14500 433 aa8.73□□□□□ -1.01
USP28-215ENST00000545608 TRIM65Q6PJ69 517 aa8.73□□□□□ -1.01
USP28-215ENST00000545608 LRSAM1Q6UWE0 723 aa8.73□□□□□ -1.01
USP28-215ENST00000545608 ENOSF1Q7L5Y1 443 aa8.73□□□□□ -1.01
USP28-215ENST00000545608 ADAT2Q7Z6V5 191 aaKnown RBP8.73□□□□□ -1.01
USP28-215ENST00000545608 IRF2BP1Q8IU81 584 aa8.73□□□□□ -1.01
USP28-215ENST00000545608 PASD1Q8IV76 773 aa8.73□□□□□ -1.01
USP28-215ENST00000545608 CCAR2Q8N163 923 aaKnown RBP8.73□□□□□ -1.01
USP28-215ENST00000545608 AADATQ8N5Z0 425 aa8.73□□□□□ -1.01
USP28-215ENST00000545608 OR52K2Q8NGK3 314 aa8.73□□□□□ -1.01
USP28-215ENST00000545608 OR2T34Q8NGX1 318 aa8.73□□□□□ -1.01
USP28-215ENST00000545608 MDM1Q8TC05 714 aa8.73□□□□□ -1.01
USP28-215ENST00000545608 KCTD12Q96CX2 325 aaKnown RBP8.73□□□□□ -1.01
USP28-215ENST00000545608 ALG14Q96F25 216 aa8.73□□□□□ -1.01
USP28-215ENST00000545608 SLC2A13Q96QE2 648 aa8.73□□□□□ -1.01
USP28-215ENST00000545608 CPXM1Q96SM3 734 aa8.73□□□□□ -1.01
USP28-215ENST00000545608 OMDQ99983 421 aa8.73□□□□□ -1.01
USP28-215ENST00000545608 TRIM62Q9BVG3 475 aa8.73□□□□□ -1.01
USP28-215ENST00000545608 PRDM9Q9NQV7 894 aa8.73□□□□□ -1.01
USP28-215ENST00000545608 COX16Q9P0S2 106 aa8.73□□□□□ -1.01
USP28-215ENST00000545608 ADAMTS1Q9UHI8 967 aa8.73□□□□□ -1.01
USP28-215ENST00000545608 SLC12A6Q9UHW9 1150 aa8.73□□□□□ -1.01
USP28-215ENST00000545608 AJAP1Q9UKB5 411 aaPredicted RBP8.73□□□□□ -1.01
USP28-215ENST00000545608 CEP83Q9Y592 693 aa8.73□□□□□ -1.01
USP28-215ENST00000545608 LAMA1P25391 3075 aa8.73□□□□□ -1.01
USP28-215ENST00000545608 CACNA1GO43497 2377 aa8.72□□□□□ -1.01
USP28-215ENST00000545608 FAM208BQ5VWN6 2430 aa8.72□□□□□ -1.01
USP28-215ENST00000545608 A0A1B0GTQ1 180 aa8.72□□□□□ -1.01
USP28-215ENST00000545608 A0A1W2PR77 199 aa8.72□□□□□ -1.01
USP28-215ENST00000545608 LRRC72A6NJI9 287 aa8.72□□□□□ -1.01
USP28-215ENST00000545608 PLK4O00444 970 aa8.72□□□□□ -1.01
USP28-215ENST00000545608 TNFSF14O43557 240 aa8.72□□□□□ -1.01
USP28-215ENST00000545608 GLI1P08151 1106 aa8.72□□□□□ -1.01
USP28-215ENST00000545608 GOT1P17174 413 aa8.72□□□□□ -1.01
USP28-215ENST00000545608 C5AR1P21730 350 aa8.72□□□□□ -1.01
USP28-215ENST00000545608 PON1P27169 355 aa8.72□□□□□ -1.01
USP28-215ENST00000545608 CCR1P32246 355 aa8.72□□□□□ -1.01
USP28-215ENST00000545608 GGCXP38435 758 aa8.72□□□□□ -1.01
USP28-215ENST00000545608 GRK6P43250 576 aa8.72□□□□□ -1.01
USP28-215ENST00000545608 IRAK1P51617 712 aa8.72□□□□□ -1.01
USP28-215ENST00000545608 CCR5P51681 352 aa8.72□□□□□ -1.01
USP28-215ENST00000545608 PLK1P53350 603 aa8.72□□□□□ -1.01
USP28-215ENST00000545608 METAP1P53582 386 aa8.72□□□□□ -1.01
USP28-215ENST00000545608 C21orf59P57076 290 aa8.72□□□□□ -1.01
USP28-215ENST00000545608 CDK17Q00537 523 aa8.72□□□□□ -1.01
USP28-215ENST00000545608 SFSWAPQ12872 951 aaKnown RBP8.72□□□□□ -1.01
USP28-215ENST00000545608 SLC12A1Q13621 1099 aa8.72□□□□□ -1.01
USP28-215ENST00000545608 SHBQ15464 509 aa8.72□□□□□ -1.01
USP28-215ENST00000545608 CAMK4Q16566 473 aa8.72□□□□□ -1.01
USP28-215ENST00000545608 CCDC157Q569K6 752 aa8.72□□□□□ -1.01
USP28-215ENST00000545608 LCE2DQ5TA82 110 aaPredicted RBP8.72□□□□□ -1.01
USP28-215ENST00000545608 RNF219Q5W0B1 726 aaPredicted RBP8.72□□□□□ -1.01
USP28-215ENST00000545608 OR6B2Q6IFH4 312 aa8.72□□□□□ -1.01
USP28-215ENST00000545608 CXorf57Q6NSI4 855 aaKnown RBP8.72□□□□□ -1.01
USP28-215ENST00000545608 FBXL22Q6P050 247 aa8.72□□□□□ -1.01
USP28-215ENST00000545608 C19orf48Q6RUI8 117 aa8.72□□□□□ -1.01
USP28-215ENST00000545608 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP8.72□□□□□ -1.01
USP28-215ENST00000545608 GBP6Q6ZN66 633 aa8.72□□□□□ -1.01
USP28-215ENST00000545608 SND1Q7KZF4 910 aaKnown RBP eCLIP8.72□□□□□ -1.01
USP28-215ENST00000545608 C14orf80Q86SX3 495 aa8.72□□□□□ -1.01
USP28-215ENST00000545608 GATAD2AQ86YP4 633 aa8.72□□□□□ -1.01
USP28-215ENST00000545608 OR14C36Q8NHC7 312 aa8.72□□□□□ -1.01
USP28-215ENST00000545608 FRS2Q8WU20 508 aa8.72□□□□□ -1.01
USP28-215ENST00000545608 SHC3Q92529 594 aa8.72□□□□□ -1.01
USP28-215ENST00000545608 PPP1R13BQ96KQ4 1090 aa8.72□□□□□ -1.01
USP28-215ENST00000545608 ELF4Q99607 663 aaPredicted RBP8.72□□□□□ -1.01
USP28-215ENST00000545608 ACE2Q9BYF1 805 aaPredicted RBP8.72□□□□□ -1.01
USP28-215ENST00000545608 CCDC86Q9H6F5 360 aaKnown RBP8.72□□□□□ -1.01
USP28-215ENST00000545608 FAM204AQ9H8W3 233 aa8.72□□□□□ -1.01
USP28-215ENST00000545608 SIX2Q9NPC8 291 aa8.72□□□□□ -1.01
USP28-215ENST00000545608 ASNSD1Q9NWL6 643 aa8.72□□□□□ -1.01
USP28-215ENST00000545608 DDIT4Q9NX09 232 aa8.72□□□□□ -1.01
USP28-215ENST00000545608 APEX2Q9UBZ4 518 aa8.72□□□□□ -1.01
USP28-215ENST00000545608 RWDD2AQ9UIY3 292 aa8.72□□□□□ -1.01
USP28-215ENST00000545608 SARDHQ9UL12 918 aa8.72□□□□□ -1.01
USP28-215ENST00000545608 FZD4Q9ULV1 537 aa8.72□□□□□ -1.01
USP28-215ENST00000545608 ZFHX4Q86UP3 3567 aa8.72□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms