RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 MYBPHLA2RUH7 354 aa15.36■□□□□ 0.05
USP28-214ENST00000545540 BUD23O43709 281 aaKnown RBP15.36■□□□□ 0.05
USP28-214ENST00000545540 TSPAN8P19075 237 aa15.36■□□□□ 0.05
USP28-214ENST00000545540 CD68P34810 354 aaPredicted RBP15.36■□□□□ 0.05
USP28-214ENST00000545540 LILRA4P59901 499 aa15.36■□□□□ 0.05
USP28-214ENST00000545540 MRPS22P82650 360 aaKnown RBP15.36■□□□□ 0.05
USP28-214ENST00000545540 ZSCAN18Q8TBC5 510 aaPredicted RBP15.36■□□□□ 0.05
USP28-214ENST00000545540 NFKBIZQ9BYH8 718 aa15.36■□□□□ 0.05
USP28-214ENST00000545540 MORF4L1Q9UBU8 362 aa15.36■□□□□ 0.05
USP28-214ENST00000545540 MAGEA13PA6NCF6 341 aa15.36■□□□□ 0.05
USP28-214ENST00000545540 ALDH1A2O94788 518 aa15.36■□□□□ 0.05
USP28-214ENST00000545540 FYNP06241 537 aa15.36■□□□□ 0.05
USP28-214ENST00000545540 COX4I1P13073 169 aa15.36■□□□□ 0.05
USP28-214ENST00000545540 ZFXP17010 805 aaPredicted RBP15.36■□□□□ 0.05
USP28-214ENST00000545540 HDCP19113 662 aa15.36■□□□□ 0.05
USP28-214ENST00000545540 PLK1P53350 603 aa15.36■□□□□ 0.05
USP28-214ENST00000545540 GALNT4Q8N4A0 578 aa15.36■□□□□ 0.05
USP28-214ENST00000545540 PPTC7Q8NI37 304 aa15.36■□□□□ 0.05
USP28-214ENST00000545540 RPL26L1Q9UNX3 145 aaKnown RBP15.36■□□□□ 0.05
USP28-214ENST00000545540 ASB14A6NK59 587 aa15.35■□□□□ 0.05
USP28-214ENST00000545540 DFFAO00273 331 aa15.35■□□□□ 0.05
USP28-214ENST00000545540 CCL22O00626 93 aa15.35■□□□□ 0.05
USP28-214ENST00000545540 TPI1P60174 286 aa15.35■□□□□ 0.05
USP28-214ENST00000545540 MSLNQ13421 630 aaPredicted RBP15.35■□□□□ 0.05
USP28-214ENST00000545540 ZRSR2Q15696 482 aaKnown RBP15.35■□□□□ 0.05
USP28-214ENST00000545540 ZBTB6Q15916 424 aa15.35■□□□□ 0.05
USP28-214ENST00000545540 ANKRD20A4Q4UJ75 823 aa15.35■□□□□ 0.05
USP28-214ENST00000545540 DHDDSQ86SQ9 333 aa15.35■□□□□ 0.05
USP28-214ENST00000545540 SLC41A1Q8IVJ1 513 aa15.35■□□□□ 0.05
USP28-214ENST00000545540 SERBP1Q8NC51 408 aaKnown RBP eCLIP15.35■□□□□ 0.05
USP28-214ENST00000545540 URGCPQ8TCY9 931 aa15.35■□□□□ 0.05
USP28-214ENST00000545540 MLPHQ9BV36 600 aaPredicted RBP15.35■□□□□ 0.05
USP28-214ENST00000545540 GCOM2Q9BZD3 368 aaPredicted RBP15.35■□□□□ 0.05
USP28-214ENST00000545540 ADAMTS10Q9H324 1103 aa15.35■□□□□ 0.05
USP28-214ENST00000545540 CYP4F12Q9HCS2 524 aa15.35■□□□□ 0.05
USP28-214ENST00000545540 MTF2Q9Y483 593 aaPredicted RBP15.35■□□□□ 0.05
USP28-214ENST00000545540 LTBP3Q9NS15 1303 aa15.35■□□□□ 0.05
USP28-214ENST00000545540 TTC24A2A3L6 582 aaPredicted RBP15.35■□□□□ 0.05
USP28-214ENST00000545540 NELFEP18615 380 aaKnown RBP15.35■□□□□ 0.05
USP28-214ENST00000545540 FDFT1P37268 417 aa15.35■□□□□ 0.05
USP28-214ENST00000545540 CXCR3P49682 368 aa15.35■□□□□ 0.05
USP28-214ENST00000545540 MPP1Q00013 466 aa15.35■□□□□ 0.05
USP28-214ENST00000545540 TWF2Q6IBS0 349 aaKnown RBP15.35■□□□□ 0.05
USP28-214ENST00000545540 OR6Y1Q8NGX8 325 aa15.35■□□□□ 0.05
USP28-214ENST00000545540 CDRT15Q96T59 188 aa15.35■□□□□ 0.05
USP28-214ENST00000545540 BFARQ9NZS9 450 aa15.35■□□□□ 0.05
USP28-214ENST00000545540 RNF181Q9P0P0 153 aa15.35■□□□□ 0.05
USP28-214ENST00000545540 TLL2Q9Y6L7 1015 aa15.35■□□□□ 0.05
USP28-214ENST00000545540 G3V2L1 256 aa15.34■□□□□ 0.05
USP28-214ENST00000545540 KLF10Q13118 480 aa15.34■□□□□ 0.05
USP28-214ENST00000545540 PDK1Q15118 436 aa15.34■□□□□ 0.05
USP28-214ENST00000545540 ARL13AQ5H913 290 aaPredicted RBP15.34■□□□□ 0.05
USP28-214ENST00000545540 NOTUMQ6P988 496 aa15.34■□□□□ 0.05
USP28-214ENST00000545540 CLEC20AQ6ZU45 233 aa15.34■□□□□ 0.05
USP28-214ENST00000545540 SDCCAG8Q86SQ7 713 aaPredicted RBP15.34■□□□□ 0.05
USP28-214ENST00000545540 KCNMB4Q86W47 210 aa15.34■□□□□ 0.05
USP28-214ENST00000545540 NMRAL1Q9HBL8 299 aa15.34■□□□□ 0.05
USP28-214ENST00000545540 SLC2A6Q9UGQ3 507 aa15.34■□□□□ 0.05
USP28-214ENST00000545540 ZCWPW2A0A1B0GU75 182 aa15.34■□□□□ 0.05
USP28-214ENST00000545540 AURKAO14965 403 aa15.34■□□□□ 0.05
USP28-214ENST00000545540 PPP1R12AO14974 1030 aaPredicted RBP15.34■□□□□ 0.05
USP28-214ENST00000545540 GPR32O75388 356 aa15.34■□□□□ 0.05
USP28-214ENST00000545540 PIGNO95427 931 aa15.34■□□□□ 0.05
USP28-214ENST00000545540 MMP3P08254 477 aa15.34■□□□□ 0.05
USP28-214ENST00000545540 HNRNPLP14866 589 aaKnown RBP eCLIP15.34■□□□□ 0.05
USP28-214ENST00000545540 MX2P20592 715 aa15.34■□□□□ 0.05
USP28-214ENST00000545540 SOX11P35716 441 aa15.34■□□□□ 0.05
USP28-214ENST00000545540 USP10Q14694 798 aaKnown RBP15.34■□□□□ 0.05
USP28-214ENST00000545540 TIFABQ6ZNK6 161 aa15.34■□□□□ 0.05
USP28-214ENST00000545540 IPMKQ8NFU5 416 aa15.34■□□□□ 0.05
USP28-214ENST00000545540 TMA16Q96EY4 203 aaKnown RBP15.34■□□□□ 0.05
USP28-214ENST00000545540 ZDHHC2Q9UIJ5 367 aa15.34■□□□□ 0.05
USP28-214ENST00000545540 RUVBL2Q9Y230 463 aaKnown RBP15.34■□□□□ 0.05
USP28-214ENST00000545540 F8W8V4 182 aa15.34■□□□□ 0.05
USP28-214ENST00000545540 IL1BP01584 269 aa15.34■□□□□ 0.05
USP28-214ENST00000545540 PTPN1P18031 435 aaKnown RBP15.34■□□□□ 0.05
USP28-214ENST00000545540 ADRA1BP35368 520 aa15.34■□□□□ 0.05
USP28-214ENST00000545540 GRIA4P48058 902 aa15.34■□□□□ 0.05
USP28-214ENST00000545540 MPP3Q13368 585 aa15.34■□□□□ 0.05
USP28-214ENST00000545540 LBRQ14739 615 aaKnown RBP15.34■□□□□ 0.05
USP28-214ENST00000545540 MMEL1Q495T6 779 aa15.34■□□□□ 0.05
USP28-214ENST00000545540 STEAP4Q687X5 459 aa15.34■□□□□ 0.05
USP28-214ENST00000545540 VPS39Q96JC1 886 aa15.34■□□□□ 0.05
USP28-214ENST00000545540 ANKRD27Q96NW4 1050 aa15.34■□□□□ 0.05
USP28-214ENST00000545540 RBBP8Q99708 897 aa15.34■□□□□ 0.05
USP28-214ENST00000545540 ASB3Q9Y575 518 aa15.34■□□□□ 0.05
USP28-214ENST00000545540 KLHL2O95198 593 aa15.33■□□□□ 0.05
USP28-214ENST00000545540 VAPBO95292 243 aa15.33■□□□□ 0.05
USP28-214ENST00000545540 CTSHP09668 335 aa15.33■□□□□ 0.05
USP28-214ENST00000545540 GRIA2P42262 883 aa15.33■□□□□ 0.05
USP28-214ENST00000545540 TAF6P49848 677 aa15.33■□□□□ 0.05
USP28-214ENST00000545540 LSM12Q3MHD2 195 aaKnown RBP15.33■□□□□ 0.05
USP28-214ENST00000545540 FBXL19Q6PCT2 694 aa15.33■□□□□ 0.05
USP28-214ENST00000545540 RCN3Q96D15 328 aa15.33■□□□□ 0.05
USP28-214ENST00000545540 TCF7L2Q9NQB0 619 aa15.33■□□□□ 0.05
USP28-214ENST00000545540 DDX43Q9NXZ2 648 aaKnown RBP15.33■□□□□ 0.05
USP28-214ENST00000545540 TRIP12Q14669 1992 aaPredicted RBP15.33■□□□□ 0.04
USP28-214ENST00000545540 CASTOR2A6NHX0 329 aa15.33■□□□□ 0.04
USP28-214ENST00000545540 C9IYK1 514 aa15.33■□□□□ 0.04
USP28-214ENST00000545540 SMIM10L2AP0DMW4 78 aa15.33■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms