RNA–Protein interactions for RNA: ENST00000544504.5

YBX3-215, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 583 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-215ENST00000544504 ZNF33AQ06730 810 aa9.77□□□□□ -0.85
YBX3-215ENST00000544504 BYSLQ13895 437 aaKnown RBP9.77□□□□□ -0.85
YBX3-215ENST00000544504 NOMO1Q15155 1222 aa9.77□□□□□ -0.85
YBX3-215ENST00000544504 MPPE1Q53F39 396 aa9.77□□□□□ -0.85
YBX3-215ENST00000544504 FAM133BQ5BKY9 247 aaKnown RBP9.77□□□□□ -0.85
YBX3-215ENST00000544504 STXBP5Q5T5C0 1151 aa9.77□□□□□ -0.85
YBX3-215ENST00000544504 FAM72AQ5TYM5 149 aa9.77□□□□□ -0.85
YBX3-215ENST00000544504 NCBP2-AS2Q69YL0 99 aa9.77□□□□□ -0.85
YBX3-215ENST00000544504 FAM72DQ6L9T8 149 aa9.77□□□□□ -0.85
YBX3-215ENST00000544504 C8orf74Q6P047 294 aa9.77□□□□□ -0.85
YBX3-215ENST00000544504 FBXL22Q6P050 247 aa9.77□□□□□ -0.85
YBX3-215ENST00000544504 MTSS1LQ765P7 747 aa9.77□□□□□ -0.85
YBX3-215ENST00000544504 GET4Q7L5D6 327 aaPredicted RBP9.77□□□□□ -0.85
YBX3-215ENST00000544504 ADAT2Q7Z6V5 191 aaKnown RBP9.77□□□□□ -0.85
YBX3-215ENST00000544504 FAM72BQ86X60 149 aa9.77□□□□□ -0.85
YBX3-215ENST00000544504 CDKL3Q8IVW4 592 aaPredicted RBP9.77□□□□□ -0.85
YBX3-215ENST00000544504 FAM217AQ8IXS0 508 aa9.77□□□□□ -0.85
YBX3-215ENST00000544504 ZNF683Q8IZ20 524 aa9.77□□□□□ -0.85
YBX3-215ENST00000544504 PQLC3Q8N755 202 aa9.77□□□□□ -0.85
YBX3-215ENST00000544504 PRELID2Q8N945 189 aa9.77□□□□□ -0.85
YBX3-215ENST00000544504 ATL2Q8NHH9 583 aa9.77□□□□□ -0.85
YBX3-215ENST00000544504 ITFG1Q8TB96 612 aa9.77□□□□□ -0.85
YBX3-215ENST00000544504 ACTL9Q8TC94 416 aa9.77□□□□□ -0.85
YBX3-215ENST00000544504 CCHCR1Q8TD31 782 aa9.77□□□□□ -0.85
YBX3-215ENST00000544504 NETO1Q8TDF5 533 aa9.77□□□□□ -0.85
YBX3-215ENST00000544504 ING5Q8WYH8 240 aa9.77□□□□□ -0.85
YBX3-215ENST00000544504 UBXN4Q92575 508 aa9.77□□□□□ -0.85
YBX3-215ENST00000544504 USP13Q92995 863 aaPredicted RBP9.77□□□□□ -0.85
YBX3-215ENST00000544504 OSBPL6Q9BZF3 934 aa9.77□□□□□ -0.85
YBX3-215ENST00000544504 TMPRSS4Q9NRS4 437 aa9.77□□□□□ -0.85
YBX3-215ENST00000544504 RBM12Q9NTZ6 932 aaKnown RBP9.77□□□□□ -0.85
YBX3-215ENST00000544504 HAUS2Q9NVX0 235 aa9.77□□□□□ -0.85
YBX3-215ENST00000544504 TMEM248Q9NWD8 314 aa9.77□□□□□ -0.85
YBX3-215ENST00000544504 PCYOX1Q9UHG3 505 aa9.77□□□□□ -0.85
YBX3-215ENST00000544504 GMEB2Q9UKD1 530 aa9.77□□□□□ -0.85
YBX3-215ENST00000544504 ANGPTL2Q9UKU9 493 aa9.77□□□□□ -0.85
YBX3-215ENST00000544504 HEY1Q9Y5J3 304 aa9.77□□□□□ -0.85
YBX3-215ENST00000544504 PKD1L2Q7Z442 2459 aa9.77□□□□□ -0.85
YBX3-215ENST00000544504 FANCMQ8IYD8 2048 aa9.77□□□□□ -0.85
YBX3-215ENST00000544504 HELZP42694 1942 aaKnown RBP9.76□□□□□ -0.85
YBX3-215ENST00000544504 ANHXE9PGG2 379 aa9.76□□□□□ -0.85
YBX3-215ENST00000544504 H7C0C1 242 aa9.76□□□□□ -0.85
YBX3-215ENST00000544504 LIASO43766 372 aa9.76□□□□□ -0.85
YBX3-215ENST00000544504 ECEL1O95672 775 aa9.76□□□□□ -0.85
YBX3-215ENST00000544504 ITGAVP06756 1048 aa9.76□□□□□ -0.85
YBX3-215ENST00000544504 LAMP2P13473 410 aa9.76□□□□□ -0.85
YBX3-215ENST00000544504 MCM3P25205 808 aa9.76□□□□□ -0.85
YBX3-215ENST00000544504 STIP1P31948 543 aaKnown RBP9.76□□□□□ -0.85
YBX3-215ENST00000544504 ACTN2P35609 894 aa9.76□□□□□ -0.85
YBX3-215ENST00000544504 COILP38432 576 aaPredicted RBP9.76□□□□□ -0.85
YBX3-215ENST00000544504 ATP5OP48047 213 aa9.76□□□□□ -0.85
YBX3-215ENST00000544504 OTUD4Q01804 1114 aaKnown RBP9.76□□□□□ -0.85
YBX3-215ENST00000544504 C2orf54Q08AI8 447 aa9.76□□□□□ -0.85
YBX3-215ENST00000544504 HTR4Q13639 388 aa9.76□□□□□ -0.85
YBX3-215ENST00000544504 LLGL1Q15334 1064 aa9.76□□□□□ -0.85
YBX3-215ENST00000544504 SIX1Q15475 284 aaPredicted RBP9.76□□□□□ -0.85
YBX3-215ENST00000544504 ZNF77Q15935 545 aa9.76□□□□□ -0.85
YBX3-215ENST00000544504 PARP15Q460N3 678 aa9.76□□□□□ -0.85
YBX3-215ENST00000544504 C6orf118Q5T5N4 469 aa9.76□□□□□ -0.85
YBX3-215ENST00000544504 NADSYN1Q6IA69 706 aa9.76□□□□□ -0.85
YBX3-215ENST00000544504 CCDC137Q6PK04 289 aaKnown RBP9.76□□□□□ -0.85
YBX3-215ENST00000544504 C4orf22Q6V702 233 aa9.76□□□□□ -0.85
YBX3-215ENST00000544504 ZNF783Q6ZMS7 281 aa9.76□□□□□ -0.85
YBX3-215ENST00000544504 C14orf80Q86SX3 495 aa9.76□□□□□ -0.85
YBX3-215ENST00000544504 SETD3Q86TU7 594 aaPredicted RBP9.76□□□□□ -0.85
YBX3-215ENST00000544504 UMODL1-AS1Q8N2C9 162 aa9.76□□□□□ -0.85
YBX3-215ENST00000544504 SLC35B2Q8TB61 432 aa9.76□□□□□ -0.85
YBX3-215ENST00000544504 BPIFB1Q8TDL5 484 aa9.76□□□□□ -0.85
YBX3-215ENST00000544504 NELL1Q92832 810 aa9.76□□□□□ -0.85
YBX3-215ENST00000544504 SLCO2A1Q92959 643 aa9.76□□□□□ -0.85
YBX3-215ENST00000544504 TMA16Q96EY4 203 aaKnown RBP9.76□□□□□ -0.85
YBX3-215ENST00000544504 ASB16Q96NS5 453 aa9.76□□□□□ -0.85
YBX3-215ENST00000544504 MYADMQ96S97 322 aa9.76□□□□□ -0.85
YBX3-215ENST00000544504 KRT12Q99456 494 aa9.76□□□□□ -0.85
YBX3-215ENST00000544504 FAM126AQ9BYI3 521 aaPredicted RBP9.76□□□□□ -0.85
YBX3-215ENST00000544504 RAB17Q9H0T7 212 aa9.76□□□□□ -0.85
YBX3-215ENST00000544504 ZFP14Q9HCL3 533 aa9.76□□□□□ -0.85
YBX3-215ENST00000544504 PARD6AQ9NPB6 346 aa9.76□□□□□ -0.85
YBX3-215ENST00000544504 SMARCAL1Q9NZC9 954 aa9.76□□□□□ -0.85
YBX3-215ENST00000544504 XPO7Q9UIA9 1087 aaKnown RBP9.76□□□□□ -0.85
YBX3-215ENST00000544504 ZNF148Q9UQR1 794 aa9.76□□□□□ -0.85
YBX3-215ENST00000544504 NOTCH4Q99466 2003 aa9.76□□□□□ -0.85
YBX3-215ENST00000544504 FAM208BQ5VWN6 2430 aa9.76□□□□□ -0.85
YBX3-215ENST00000544504 NUP210Q8TEM1 1887 aaPredicted RBP9.76□□□□□ -0.85
YBX3-215ENST00000544504 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP9.75□□□□□ -0.85
YBX3-215ENST00000544504 TCRBV7S2A1N4TA0A589 114 aa9.75□□□□□ -0.85
YBX3-215ENST00000544504 BCLAF3A2AJT9 711 aaKnown RBP9.75□□□□□ -0.85
YBX3-215ENST00000544504 ARHGAP42A6NI28 874 aa9.75□□□□□ -0.85
YBX3-215ENST00000544504 GREM1O60565 184 aa9.75□□□□□ -0.85
YBX3-215ENST00000544504 RAMP2O60895 175 aa9.75□□□□□ -0.85
YBX3-215ENST00000544504 PRAMEF12O95522 483 aa9.75□□□□□ -0.85
YBX3-215ENST00000544504 RBP3P10745 1247 aa9.75□□□□□ -0.85
YBX3-215ENST00000544504 OR1E1P30953 314 aa9.75□□□□□ -0.85
YBX3-215ENST00000544504 IFNAR2P48551 515 aa9.75□□□□□ -0.85
YBX3-215ENST00000544504 TERF1P54274 439 aa9.75□□□□□ -0.85
YBX3-215ENST00000544504 DR1Q01658 176 aa9.75□□□□□ -0.85
YBX3-215ENST00000544504 PRKCQQ04759 706 aa9.75□□□□□ -0.85
YBX3-215ENST00000544504 NR1H3Q13133 447 aa9.75□□□□□ -0.85
YBX3-215ENST00000544504 ZNF177Q13360 481 aaPredicted RBP9.75□□□□□ -0.85
YBX3-215ENST00000544504 PDGFRLQ15198 375 aa9.75□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms