RNA–Protein interactions for RNA: ENST00000541410.1

CLIP1-216, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,379 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-216ENST00000541410 AUTS2Q8WXX7 1259 aa14.84□□□□□ -0.03
CLIP1-216ENST00000541410 TTC17Q96AE7 1141 aa14.84□□□□□ -0.03
CLIP1-216ENST00000541410 ZNF669Q96BR6 464 aaPredicted RBP14.84□□□□□ -0.03
CLIP1-216ENST00000541410 ZNF778Q96MU6 729 aa14.84□□□□□ -0.03
CLIP1-216ENST00000541410 NOL6Q9H6R4 1146 aaKnown RBP14.84□□□□□ -0.03
CLIP1-216ENST00000541410 TLR8Q9NR97 1041 aaKnown RBP14.84□□□□□ -0.03
CLIP1-216ENST00000541410 CHRAC1Q9NRG0 131 aa14.84□□□□□ -0.03
CLIP1-216ENST00000541410 PCMTD2Q9NV79 361 aa14.84□□□□□ -0.03
CLIP1-216ENST00000541410 KRT37O76014 449 aa14.83□□□□□ -0.03
CLIP1-216ENST00000541410 SNRPAP09012 282 aaKnown RBP14.83□□□□□ -0.03
CLIP1-216ENST00000541410 PGAM1P18669 254 aa14.83□□□□□ -0.03
CLIP1-216ENST00000541410 ITGB8P26012 769 aa14.83□□□□□ -0.03
CLIP1-216ENST00000541410 CCDC121Q6ZUS5 278 aa14.83□□□□□ -0.03
CLIP1-216ENST00000541410 RTL3Q8N8U3 475 aaKnown RBP14.83□□□□□ -0.03
CLIP1-216ENST00000541410 ANKS4BQ8N8V4 417 aa14.83□□□□□ -0.03
CLIP1-216ENST00000541410 IPMKQ8NFU5 416 aa14.83□□□□□ -0.03
CLIP1-216ENST00000541410 PTPRN2Q92932 1015 aa14.83□□□□□ -0.03
CLIP1-216ENST00000541410 KLHL5Q96PQ7 755 aa14.83□□□□□ -0.03
CLIP1-216ENST00000541410 CWH43Q9H720 699 aa14.83□□□□□ -0.03
CLIP1-216ENST00000541410 ABCF3Q9NUQ8 709 aa14.83□□□□□ -0.03
CLIP1-216ENST00000541410 TMEM39AQ9NV64 488 aa14.83□□□□□ -0.03
CLIP1-216ENST00000541410 MYLKQ15746 1914 aa14.83□□□□□ -0.04
CLIP1-216ENST00000541410 SLC38A8A6NNN8 435 aa14.83□□□□□ -0.04
CLIP1-216ENST00000541410 J3KR12 359 aa14.83□□□□□ -0.04
CLIP1-216ENST00000541410 FGF10O15520 208 aaPredicted RBP14.83□□□□□ -0.04
CLIP1-216ENST00000541410 TLR5O60602 858 aa14.83□□□□□ -0.04
CLIP1-216ENST00000541410 RFPL1O75677 317 aa14.83□□□□□ -0.04
CLIP1-216ENST00000541410 CSPG5O95196 566 aa14.83□□□□□ -0.04
CLIP1-216ENST00000541410 ZWINTO95229 277 aa14.83□□□□□ -0.04
CLIP1-216ENST00000541410 HLA-DQB2P05538 268 aa14.83□□□□□ -0.04
CLIP1-216ENST00000541410 DNAJB2P25686 324 aa14.83□□□□□ -0.04
CLIP1-216ENST00000541410 HOXC13P31276 330 aa14.83□□□□□ -0.04
CLIP1-216ENST00000541410 ZNF135P52742 658 aaPredicted RBP14.83□□□□□ -0.04
CLIP1-216ENST00000541410 MAXP61244 160 aa14.83□□□□□ -0.04
CLIP1-216ENST00000541410 IRX4P78413 519 aa14.83□□□□□ -0.04
CLIP1-216ENST00000541410 DEFB103AP81534 67 aa14.83□□□□□ -0.04
CLIP1-216ENST00000541410 IKBKEQ14164 716 aa14.83□□□□□ -0.04
CLIP1-216ENST00000541410 ITPRIPL1Q6GPH6 555 aa14.83□□□□□ -0.04
CLIP1-216ENST00000541410 FBXL22Q6P050 247 aa14.83□□□□□ -0.04
CLIP1-216ENST00000541410 MSANTD2Q6P1R3 559 aa14.83□□□□□ -0.04
CLIP1-216ENST00000541410 CFAP52Q8N1V2 620 aa14.83□□□□□ -0.04
CLIP1-216ENST00000541410 CCDC63Q8NA47 563 aa14.83□□□□□ -0.04
CLIP1-216ENST00000541410 LRRC8CQ8TDW0 803 aa14.83□□□□□ -0.04
CLIP1-216ENST00000541410 AZIN2Q96A70 460 aa14.83□□□□□ -0.04
CLIP1-216ENST00000541410 SRPK1Q96SB4 655 aaKnown RBP14.83□□□□□ -0.04
CLIP1-216ENST00000541410 RBM22Q9NW64 420 aaKnown RBP eCLIP14.83□□□□□ -0.04
CLIP1-216ENST00000541410 IL37Q9NZH6 218 aa14.83□□□□□ -0.04
CLIP1-216ENST00000541410 H7C4K7 107 aa14.82□□□□□ -0.04
CLIP1-216ENST00000541410 SCAMP3O14828 347 aaKnown RBP14.82□□□□□ -0.04
CLIP1-216ENST00000541410 MTSS1O43312 755 aa14.82□□□□□ -0.04
CLIP1-216ENST00000541410 PMPCBO75439 489 aa14.82□□□□□ -0.04
CLIP1-216ENST00000541410 RTN3O95197 1032 aaPredicted RBP14.82□□□□□ -0.04
CLIP1-216ENST00000541410 SEC24AO95486 1093 aa14.82□□□□□ -0.04
CLIP1-216ENST00000541410 CCNCP24863 283 aa14.82□□□□□ -0.04
CLIP1-216ENST00000541410 ELAVL2Q12926 359 aaKnown RBP14.82□□□□□ -0.04
CLIP1-216ENST00000541410 CBLBQ13191 982 aa14.82□□□□□ -0.04
CLIP1-216ENST00000541410 PDK4Q16654 411 aa14.82□□□□□ -0.04
CLIP1-216ENST00000541410 STEAP4Q687X5 459 aa14.82□□□□□ -0.04
CLIP1-216ENST00000541410 SPATA21Q7Z572 469 aa14.82□□□□□ -0.04
CLIP1-216ENST00000541410 RASSF3Q86WH2 238 aa14.82□□□□□ -0.04
CLIP1-216ENST00000541410 ZNF75CPQ92670 426 aaPredicted RBP14.82□□□□□ -0.04
CLIP1-216ENST00000541410 HMCESQ96FZ2 354 aa14.82□□□□□ -0.04
CLIP1-216ENST00000541410 APOPT1Q96IL0 206 aa14.82□□□□□ -0.04
CLIP1-216ENST00000541410 AGAP2Q99490 1192 aa14.82□□□□□ -0.04
CLIP1-216ENST00000541410 TMEM175Q9BSA9 504 aa14.82□□□□□ -0.04
CLIP1-216ENST00000541410 MECRQ9BV79 373 aa14.82□□□□□ -0.04
CLIP1-216ENST00000541410 BRD8Q9H0E9 1235 aa14.82□□□□□ -0.04
CLIP1-216ENST00000541410 PRDM5Q9NQX1 630 aaPredicted RBP14.82□□□□□ -0.04
CLIP1-216ENST00000541410 BFARQ9NZS9 450 aa14.82□□□□□ -0.04
CLIP1-216ENST00000541410 TRHDEQ9UKU6 1024 aa14.82□□□□□ -0.04
CLIP1-216ENST00000541410 PHTF1Q9UMS5 762 aa14.82□□□□□ -0.04
CLIP1-216ENST00000541410 USP15Q9Y4E8 981 aaPredicted RBP14.82□□□□□ -0.04
CLIP1-216ENST00000541410 FAM92AA1XBS5 289 aa14.82□□□□□ -0.04
CLIP1-216ENST00000541410 COPEO14579 308 aa14.82□□□□□ -0.04
CLIP1-216ENST00000541410 POLBP06746 335 aa14.82□□□□□ -0.04
CLIP1-216ENST00000541410 COG7P83436 770 aa14.82□□□□□ -0.04
CLIP1-216ENST00000541410 OVGP1Q12889 678 aa14.82□□□□□ -0.04
CLIP1-216ENST00000541410 PCSK7Q16549 785 aa14.82□□□□□ -0.04
CLIP1-216ENST00000541410 USP41Q3LFD5 358 aa14.82□□□□□ -0.04
CLIP1-216ENST00000541410 RFWD3Q6PCD5 774 aa14.82□□□□□ -0.04
CLIP1-216ENST00000541410 ARHGAP18Q8N392 663 aa14.82□□□□□ -0.04
CLIP1-216ENST00000541410 PABPC5Q96DU9 382 aaKnown RBP14.82□□□□□ -0.04
CLIP1-216ENST00000541410 IGSF21Q96ID5 467 aa14.82□□□□□ -0.04
CLIP1-216ENST00000541410 ZNF512Q96ME7 567 aaPredicted RBP14.82□□□□□ -0.04
CLIP1-216ENST00000541410 CASS4Q9NQ75 786 aa14.82□□□□□ -0.04
CLIP1-216ENST00000541410 IPO11Q9UI26 975 aaKnown RBP14.82□□□□□ -0.04
CLIP1-216ENST00000541410 MIA3Q5JRA6 1907 aa14.81□□□□□ -0.04
CLIP1-216ENST00000541410 KRT38O76015 456 aa14.81□□□□□ -0.04
CLIP1-216ENST00000541410 NEBLO76041 1014 aa14.81□□□□□ -0.04
CLIP1-216ENST00000541410 GJB5O95377 273 aa14.81□□□□□ -0.04
CLIP1-216ENST00000541410 OAS1P00973 400 aaKnown RBP14.81□□□□□ -0.04
CLIP1-216ENST00000541410 ACRP10323 421 aa14.81□□□□□ -0.04
CLIP1-216ENST00000541410 NEFHP12036 1026 aa14.81□□□□□ -0.04
CLIP1-216ENST00000541410 NEK3P51956 506 aa14.81□□□□□ -0.04
CLIP1-216ENST00000541410 SLC18A2Q05940 514 aa14.81□□□□□ -0.04
CLIP1-216ENST00000541410 NIPAL4Q0D2K0 466 aa14.81□□□□□ -0.04
CLIP1-216ENST00000541410 FAM133BQ5BKY9 247 aaKnown RBP14.81□□□□□ -0.04
CLIP1-216ENST00000541410 SPATS2Q86XZ4 545 aaKnown RBP14.81□□□□□ -0.04
CLIP1-216ENST00000541410 ZNF683Q8IZ20 524 aa14.81□□□□□ -0.04
CLIP1-216ENST00000541410 NDUFAF2Q8N183 169 aa14.81□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms