RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 RFX8Q6ZV50 586 aa14.63□□□□□ -0.07
NUP54-216ENST00000514901 POLNQ7Z5Q5 900 aa14.63□□□□□ -0.07
NUP54-216ENST00000514901 KIAA1328Q86T90 577 aa14.63□□□□□ -0.07
NUP54-216ENST00000514901 LONP2Q86WA8 852 aa14.63□□□□□ -0.07
NUP54-216ENST00000514901 MAP7D3Q8IWC1 876 aa14.63□□□□□ -0.07
NUP54-216ENST00000514901 LRRC8AQ8IWT6 810 aa14.63□□□□□ -0.07
NUP54-216ENST00000514901 DCAF4L2Q8NA75 395 aa14.63□□□□□ -0.07
NUP54-216ENST00000514901 OR52K2Q8NGK3 314 aa14.63□□□□□ -0.07
NUP54-216ENST00000514901 HSPH1Q92598 858 aa14.63□□□□□ -0.07
NUP54-216ENST00000514901 ATOH1Q92858 354 aaPredicted RBP14.63□□□□□ -0.07
NUP54-216ENST00000514901 HHIPQ96QV1 700 aa14.63□□□□□ -0.07
NUP54-216ENST00000514901 KCTD15Q96SI1 283 aaPredicted RBP14.63□□□□□ -0.07
NUP54-216ENST00000514901 FBRSQ9HAH7 460 aa14.63□□□□□ -0.07
NUP54-216ENST00000514901 ZDHHC4Q9NPG8 344 aa14.63□□□□□ -0.07
NUP54-216ENST00000514901 RCOR3Q9P2K3 495 aaPredicted RBP14.63□□□□□ -0.07
NUP54-216ENST00000514901 SLC25A13Q9UJS0 675 aa14.63□□□□□ -0.07
NUP54-216ENST00000514901 HPCAL4Q9UM19 191 aa14.63□□□□□ -0.07
NUP54-216ENST00000514901 A0A0D9SEW6 157 aa14.62□□□□□ -0.07
NUP54-216ENST00000514901 A0A1W2PQF6 199 aa14.62□□□□□ -0.07
NUP54-216ENST00000514901 TMEM110-MUSTN1A8MSY1 372 aa14.62□□□□□ -0.07
NUP54-216ENST00000514901 WASH3PC4AMC7 463 aa14.62□□□□□ -0.07
NUP54-216ENST00000514901 RAMP2O60895 175 aa14.62□□□□□ -0.07
NUP54-216ENST00000514901 EPHX1P07099 455 aa14.62□□□□□ -0.07
NUP54-216ENST00000514901 TCF4P15884 667 aa14.62□□□□□ -0.07
NUP54-216ENST00000514901 CNR2P34972 360 aa14.62□□□□□ -0.07
NUP54-216ENST00000514901 KIF5AQ12840 1032 aa14.62□□□□□ -0.07
NUP54-216ENST00000514901 KRT81Q14533 505 aa14.62□□□□□ -0.07
NUP54-216ENST00000514901 POLD3Q15054 466 aaPredicted RBP14.62□□□□□ -0.07
NUP54-216ENST00000514901 PDK2Q15119 407 aa14.62□□□□□ -0.07
NUP54-216ENST00000514901 SMTNL2Q2TAL5 461 aa14.62□□□□□ -0.07
NUP54-216ENST00000514901 LRRC38Q5VT99 294 aa14.62□□□□□ -0.07
NUP54-216ENST00000514901 RETSATQ6NUM9 610 aa14.62□□□□□ -0.07
NUP54-216ENST00000514901 WDR5BQ86VZ2 330 aa14.62□□□□□ -0.07
NUP54-216ENST00000514901 RASSF3Q86WH2 238 aa14.62□□□□□ -0.07
NUP54-216ENST00000514901 UMODL1-AS1Q8N2C9 162 aa14.62□□□□□ -0.07
NUP54-216ENST00000514901 LZTR1Q8N653 840 aa14.62□□□□□ -0.07
NUP54-216ENST00000514901 ZBTB44Q8NCP5 570 aa14.62□□□□□ -0.07
NUP54-216ENST00000514901 ACRBPQ8NEB7 543 aa14.62□□□□□ -0.07
NUP54-216ENST00000514901 FAM71BQ8TC56 605 aa14.62□□□□□ -0.07
NUP54-216ENST00000514901 MRGPRX3Q96LB0 322 aa14.62□□□□□ -0.07
NUP54-216ENST00000514901 SPON2Q9BUD6 331 aa14.62□□□□□ -0.07
NUP54-216ENST00000514901 ACE2Q9BYF1 805 aaPredicted RBP14.62□□□□□ -0.07
NUP54-216ENST00000514901 STAU2Q9NUL3 570 aaKnown RBP eCLIP14.62□□□□□ -0.07
NUP54-216ENST00000514901 POLR3BQ9NW08 1133 aaPredicted RBP14.62□□□□□ -0.07
NUP54-216ENST00000514901 CWC15Q9P013 229 aaKnown RBP14.62□□□□□ -0.07
NUP54-216ENST00000514901 DNAI1Q9UI46 699 aa14.62□□□□□ -0.07
NUP54-216ENST00000514901 REXO2Q9Y3B8 237 aaKnown RBP14.62□□□□□ -0.07
NUP54-216ENST00000514901 TARSL2A2RTX5 802 aaKnown RBP14.61□□□□□ -0.07
NUP54-216ENST00000514901 AXIN1O15169 862 aa14.61□□□□□ -0.07
NUP54-216ENST00000514901 GOT1P17174 413 aa14.61□□□□□ -0.07
NUP54-216ENST00000514901 PRKCHP24723 683 aa14.61□□□□□ -0.07
NUP54-216ENST00000514901 CTSOP43234 321 aaPredicted RBP14.61□□□□□ -0.07
NUP54-216ENST00000514901 CLCN6P51797 869 aa14.61□□□□□ -0.07
NUP54-216ENST00000514901 NDST2P52849 883 aa14.61□□□□□ -0.07
NUP54-216ENST00000514901 CDH6P55285 790 aa14.61□□□□□ -0.07
NUP54-216ENST00000514901 GEMIN4P57678 1058 aaKnown RBP14.61□□□□□ -0.07
NUP54-216ENST00000514901 CAMK2GQ13555 558 aaPredicted RBP14.61□□□□□ -0.07
NUP54-216ENST00000514901 BYSLQ13895 437 aaKnown RBP14.61□□□□□ -0.07
NUP54-216ENST00000514901 DPYSQ14117 519 aa14.61□□□□□ -0.07
NUP54-216ENST00000514901 IFI16Q16666 785 aaKnown RBP14.61□□□□□ -0.07
NUP54-216ENST00000514901 HNRNPA1L2Q32P51 320 aaKnown RBP14.61□□□□□ -0.07
NUP54-216ENST00000514901 PARP15Q460N3 678 aa14.61□□□□□ -0.07
NUP54-216ENST00000514901 IL31Q6EBC2 164 aa14.61□□□□□ -0.07
NUP54-216ENST00000514901 TXNRD3NBQ6F5E7 133 aa14.61□□□□□ -0.07
NUP54-216ENST00000514901 KCTD6Q8NC69 237 aa14.61□□□□□ -0.07
NUP54-216ENST00000514901 ARHGEF2Q92974 986 aaKnown RBP14.61□□□□□ -0.07
NUP54-216ENST00000514901 PSMB7Q99436 277 aa14.61□□□□□ -0.07
NUP54-216ENST00000514901 SEMA4AQ9H3S1 761 aa14.61□□□□□ -0.07
NUP54-216ENST00000514901 ATP13A1Q9HD20 1204 aa14.61□□□□□ -0.07
NUP54-216ENST00000514901 SLCO3A1Q9UIG8 710 aa14.61□□□□□ -0.07
NUP54-216ENST00000514901 HS3ST2Q9Y278 367 aa14.61□□□□□ -0.07
NUP54-216ENST00000514901 ALG6Q9Y672 507 aa14.61□□□□□ -0.07
NUP54-216ENST00000514901 NUP205Q92621 2012 aa14.61□□□□□ -0.07
NUP54-216ENST00000514901 EDDM13A0A1B0GTR0 161 aa14.6□□□□□ -0.07
NUP54-216ENST00000514901 TCRBV21S2A2A0A5A6 115 aa14.6□□□□□ -0.07
NUP54-216ENST00000514901 RCCD1A6NED2 376 aa14.6□□□□□ -0.07
NUP54-216ENST00000514901 ZSCAN5CA6NGD5 496 aaPredicted RBP14.6□□□□□ -0.07
NUP54-216ENST00000514901 SPOPO43791 374 aa14.6□□□□□ -0.07
NUP54-216ENST00000514901 ATP9BO43861 1147 aa14.6□□□□□ -0.07
NUP54-216ENST00000514901 BUB1BO60566 1050 aaPredicted RBP14.6□□□□□ -0.07
NUP54-216ENST00000514901 ERCC2P18074 760 aa14.6□□□□□ -0.07
NUP54-216ENST00000514901 COMTP21964 271 aa14.6□□□□□ -0.07
NUP54-216ENST00000514901 FNTBP49356 437 aa14.6□□□□□ -0.07
NUP54-216ENST00000514901 NAP1L1P55209 391 aaKnown RBP14.6□□□□□ -0.07
NUP54-216ENST00000514901 TAS2R40P59535 323 aa14.6□□□□□ -0.07
NUP54-216ENST00000514901 GSE1Q14687 1217 aa14.6□□□□□ -0.07
NUP54-216ENST00000514901 USP39Q53GS9 565 aaKnown RBP14.6□□□□□ -0.07
NUP54-216ENST00000514901 ZFYVE27Q5T4F4 411 aa14.6□□□□□ -0.07
NUP54-216ENST00000514901 HEATR6Q6AI08 1181 aaKnown RBP14.6□□□□□ -0.07
NUP54-216ENST00000514901 ANO7Q6IWH7 933 aa14.6□□□□□ -0.07
NUP54-216ENST00000514901 C11orf63Q6NUN7 778 aa14.6□□□□□ -0.07
NUP54-216ENST00000514901 KIAA1211LQ6NV74 962 aa14.6□□□□□ -0.07
NUP54-216ENST00000514901 METTL3Q86U44 580 aaKnown RBP14.6□□□□□ -0.07
NUP54-216ENST00000514901 VSIG1Q86XK7 387 aa14.6□□□□□ -0.07
NUP54-216ENST00000514901 RHOT1Q8IXI2 618 aa14.6□□□□□ -0.07
NUP54-216ENST00000514901 PGBD3Q8N328 593 aa14.6□□□□□ -0.07
NUP54-216ENST00000514901 OR7D4Q8NG98 312 aa14.6□□□□□ -0.07
NUP54-216ENST00000514901 TPCN2Q8NHX9 752 aa14.6□□□□□ -0.07
NUP54-216ENST00000514901 TSC1Q92574 1164 aa14.6□□□□□ -0.07
NUP54-216ENST00000514901 MYO19Q96H55 970 aa14.6□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms