RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 SNX17Q15036 470 aa12.28□□□□□ -0.44
LIMCH1-213ENST00000511496 SLC9B1Q4ZJI4 515 aa12.28□□□□□ -0.44
LIMCH1-213ENST00000511496 LGSNQ5TDP6 509 aa12.28□□□□□ -0.44
LIMCH1-213ENST00000511496 UNC5AQ6ZN44 842 aa12.28□□□□□ -0.44
LIMCH1-213ENST00000511496 CCDC120Q96HB5 630 aa12.28□□□□□ -0.44
LIMCH1-213ENST00000511496 EFHD1Q9BUP0 239 aa12.28□□□□□ -0.44
LIMCH1-213ENST00000511496 MUC3BQ9H195 1237 aa12.28□□□□□ -0.44
LIMCH1-213ENST00000511496 RPRD1BQ9NQG5 326 aaKnown RBP12.28□□□□□ -0.44
LIMCH1-213ENST00000511496 MAT2BQ9NZL9 334 aa12.28□□□□□ -0.44
LIMCH1-213ENST00000511496 ZNF221Q9UK13 617 aa12.28□□□□□ -0.44
LIMCH1-213ENST00000511496 NUDT5Q9UKK9 219 aa12.28□□□□□ -0.44
LIMCH1-213ENST00000511496 TCAF1Q9Y4C2 921 aa12.28□□□□□ -0.44
LIMCH1-213ENST00000511496 PCDHGA7Q9Y5G6 932 aa12.28□□□□□ -0.44
LIMCH1-213ENST00000511496 MAU2Q9Y6X3 613 aa12.28□□□□□ -0.44
LIMCH1-213ENST00000511496 C5P01031 1676 aa12.28□□□□□ -0.44
LIMCH1-213ENST00000511496 BAZ2AQ9UIF9 1905 aaKnown RBP12.27□□□□□ -0.44
LIMCH1-213ENST00000511496 VWA5AO00534 786 aa12.27□□□□□ -0.44
LIMCH1-213ENST00000511496 KCNJ13O60928 360 aa12.27□□□□□ -0.44
LIMCH1-213ENST00000511496 PRLP01236 227 aa12.27□□□□□ -0.44
LIMCH1-213ENST00000511496 KRT1P04264 644 aa12.27□□□□□ -0.44
LIMCH1-213ENST00000511496 P4HBP07237 508 aaKnown RBP12.27□□□□□ -0.44
LIMCH1-213ENST00000511496 USP17L8P0C7I0 530 aa12.27□□□□□ -0.44
LIMCH1-213ENST00000511496 COL6A1P12109 1028 aa12.27□□□□□ -0.44
LIMCH1-213ENST00000511496 IFI30P13284 250 aa12.27□□□□□ -0.44
LIMCH1-213ENST00000511496 CYP11B1P15538 503 aa12.27□□□□□ -0.44
LIMCH1-213ENST00000511496 ALDH4A1P30038 563 aa12.27□□□□□ -0.44
LIMCH1-213ENST00000511496 FMO4P31512 558 aa12.27□□□□□ -0.44
LIMCH1-213ENST00000511496 SLC9A3P48764 834 aa12.27□□□□□ -0.44
LIMCH1-213ENST00000511496 GDF10P55107 478 aa12.27□□□□□ -0.44
LIMCH1-213ENST00000511496 POLD3Q15054 466 aaPredicted RBP12.27□□□□□ -0.44
LIMCH1-213ENST00000511496 KIZQ2M2Z5 673 aa12.27□□□□□ -0.44
LIMCH1-213ENST00000511496 ACAD10Q6JQN1 1059 aa12.27□□□□□ -0.44
LIMCH1-213ENST00000511496 GALNT12Q8IXK2 581 aa12.27□□□□□ -0.44
LIMCH1-213ENST00000511496 RAB2BQ8WUD1 216 aa12.27□□□□□ -0.44
LIMCH1-213ENST00000511496 TRIB2Q92519 343 aa12.27□□□□□ -0.44
LIMCH1-213ENST00000511496 GLMNQ92990 594 aa12.27□□□□□ -0.44
LIMCH1-213ENST00000511496 NPAS2Q99743 824 aa12.27□□□□□ -0.44
LIMCH1-213ENST00000511496 WDR55Q9H6Y2 383 aaPredicted RBP12.27□□□□□ -0.44
LIMCH1-213ENST00000511496 COG4Q9H9E3 785 aa12.27□□□□□ -0.44
LIMCH1-213ENST00000511496 RAB20Q9NX57 234 aa12.27□□□□□ -0.44
LIMCH1-213ENST00000511496 UBA2Q9UBT2 640 aaPredicted RBP12.27□□□□□ -0.44
LIMCH1-213ENST00000511496 SNCAIPQ9Y6H5 919 aa12.27□□□□□ -0.44
LIMCH1-213ENST00000511496 CENPXA8MT69 81 aa12.27□□□□□ -0.45
LIMCH1-213ENST00000511496 RFPL1O75677 317 aa12.27□□□□□ -0.45
LIMCH1-213ENST00000511496 NCAM1P13591 858 aa12.27□□□□□ -0.45
LIMCH1-213ENST00000511496 NT5C2P49902 561 aa12.27□□□□□ -0.45
LIMCH1-213ENST00000511496 HK2P52789 917 aa12.27□□□□□ -0.45
LIMCH1-213ENST00000511496 GPLD1P80108 840 aa12.27□□□□□ -0.45
LIMCH1-213ENST00000511496 PRKCEQ02156 737 aa12.27□□□□□ -0.45
LIMCH1-213ENST00000511496 MERTKQ12866 999 aa12.27□□□□□ -0.45
LIMCH1-213ENST00000511496 SMAD1Q15797 465 aaKnown RBP12.27□□□□□ -0.45
LIMCH1-213ENST00000511496 NXNQ6DKJ4 435 aa12.27□□□□□ -0.45
LIMCH1-213ENST00000511496 ZNF444Q8N0Y2 327 aaPredicted RBP12.27□□□□□ -0.45
LIMCH1-213ENST00000511496 DHX38Q92620 1227 aaKnown RBP12.27□□□□□ -0.45
LIMCH1-213ENST00000511496 TRIM63Q969Q1 353 aa12.27□□□□□ -0.45
LIMCH1-213ENST00000511496 NRBF2Q96F24 287 aa12.27□□□□□ -0.45
LIMCH1-213ENST00000511496 DACH2Q96NX9 599 aa12.27□□□□□ -0.45
LIMCH1-213ENST00000511496 OR52B2Q96RD2 323 aa12.27□□□□□ -0.45
LIMCH1-213ENST00000511496 TMEM47Q9BQJ4 181 aa12.27□□□□□ -0.45
LIMCH1-213ENST00000511496 ZSCAN5AQ9BUG6 496 aa12.27□□□□□ -0.45
LIMCH1-213ENST00000511496 SPC25Q9HBM1 224 aa12.27□□□□□ -0.45
LIMCH1-213ENST00000511496 STAU2Q9NUL3 570 aaKnown RBP eCLIP12.27□□□□□ -0.45
LIMCH1-213ENST00000511496 PAQR5Q9NXK6 330 aaPredicted RBP12.27□□□□□ -0.45
LIMCH1-213ENST00000511496 AURKCQ9UQB9 309 aa12.27□□□□□ -0.45
LIMCH1-213ENST00000511496 ARFGEF2Q9Y6D5 1785 aa12.27□□□□□ -0.45
LIMCH1-213ENST00000511496 C1orf167Q5SNV9 1468 aa12.27□□□□□ -0.45
LIMCH1-213ENST00000511496 H0YJX3 145 aa12.27□□□□□ -0.45
LIMCH1-213ENST00000511496 XYLBO75191 536 aa12.27□□□□□ -0.45
LIMCH1-213ENST00000511496 BCAS1O75363 584 aaPredicted RBP12.27□□□□□ -0.45
LIMCH1-213ENST00000511496 IL18RAPO95256 599 aa12.27□□□□□ -0.45
LIMCH1-213ENST00000511496 GSNP06396 782 aa12.27□□□□□ -0.45
LIMCH1-213ENST00000511496 FGRP09769 529 aa12.27□□□□□ -0.45
LIMCH1-213ENST00000511496 PCP11498 1178 aaKnown RBP12.27□□□□□ -0.45
LIMCH1-213ENST00000511496 FGFR2P21802 821 aa12.27□□□□□ -0.45
LIMCH1-213ENST00000511496 ADCY7P51828 1080 aa12.27□□□□□ -0.45
LIMCH1-213ENST00000511496 NME5P56597 212 aa12.27□□□□□ -0.45
LIMCH1-213ENST00000511496 AQP6Q13520 282 aa12.27□□□□□ -0.45
LIMCH1-213ENST00000511496 ZNF598Q86UK7 904 aaKnown RBP12.27□□□□□ -0.45
LIMCH1-213ENST00000511496 PARP8Q8N3A8 854 aa12.27□□□□□ -0.45
LIMCH1-213ENST00000511496 OR13F1Q8NGS4 319 aa12.27□□□□□ -0.45
LIMCH1-213ENST00000511496 FAM110BQ8TC76 370 aa12.27□□□□□ -0.45
LIMCH1-213ENST00000511496 RSAD2Q8WXG1 361 aa12.27□□□□□ -0.45
LIMCH1-213ENST00000511496 JPH3Q8WXH2 748 aaPredicted RBP12.27□□□□□ -0.45
LIMCH1-213ENST00000511496 LHPPQ9H008 270 aa12.27□□□□□ -0.45
LIMCH1-213ENST00000511496 DCP1AQ9NPI6 582 aaPredicted RBP12.27□□□□□ -0.45
LIMCH1-213ENST00000511496 C8orf4Q9NR00 106 aa12.27□□□□□ -0.45
LIMCH1-213ENST00000511496 TBC1D22BQ9NU19 505 aa12.27□□□□□ -0.45
LIMCH1-213ENST00000511496 ENPP5Q9UJA9 477 aa12.27□□□□□ -0.45
LIMCH1-213ENST00000511496 AXIN2Q9Y2T1 843 aa12.27□□□□□ -0.45
LIMCH1-213ENST00000511496 RGSL1A5PLK6 1076 aa12.26□□□□□ -0.45
LIMCH1-213ENST00000511496 SYNCRIPO60506 623 aaKnown RBP12.26□□□□□ -0.45
LIMCH1-213ENST00000511496 TOMM70O94826 608 aa12.26□□□□□ -0.45
LIMCH1-213ENST00000511496 FAM13AO94988 1023 aa12.26□□□□□ -0.45
LIMCH1-213ENST00000511496 KCNK2O95069 426 aa12.26□□□□□ -0.45
LIMCH1-213ENST00000511496 EPN2O95208 641 aa12.26□□□□□ -0.45
LIMCH1-213ENST00000511496 UGT2B4P06133 528 aa12.26□□□□□ -0.45
LIMCH1-213ENST00000511496 BMP4P12644 408 aa12.26□□□□□ -0.45
LIMCH1-213ENST00000511496 TCF4P15884 667 aa12.26□□□□□ -0.45
LIMCH1-213ENST00000511496 GARTP22102 1010 aa12.26□□□□□ -0.45
LIMCH1-213ENST00000511496 TNFAIP2Q03169 654 aa12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms