RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 UBE2Q2Q8WVN8 375 aa30.36■■■□□ 2.45
LIMCH1-211ENST00000509638 NELL2Q99435 816 aa30.36■■■□□ 2.45
LIMCH1-211ENST00000509638 KLC2Q9H0B6 622 aa30.36■■■□□ 2.45
LIMCH1-211ENST00000509638 EIF2AK3Q9NZJ5 1116 aaKnown RBP30.36■■■□□ 2.45
LIMCH1-211ENST00000509638 TNFRSF4P43489 277 aa30.35■■■□□ 2.45
LIMCH1-211ENST00000509638 ZNF211Q13398 564 aaPredicted RBP30.35■■■□□ 2.45
LIMCH1-211ENST00000509638 LRRC32Q14392 662 aa30.35■■■□□ 2.45
LIMCH1-211ENST00000509638 POLD3Q15054 466 aaPredicted RBP30.35■■■□□ 2.45
LIMCH1-211ENST00000509638 RFX6Q8HWS3 928 aa30.35■■■□□ 2.45
LIMCH1-211ENST00000509638 CCDC105Q8IYK2 499 aa30.35■■■□□ 2.45
LIMCH1-211ENST00000509638 NETO2Q8NC67 525 aa30.35■■■□□ 2.45
LIMCH1-211ENST00000509638 SORCS1Q8WY21 1168 aa30.35■■■□□ 2.45
LIMCH1-211ENST00000509638 TLR10Q9BXR5 811 aa30.35■■■□□ 2.45
LIMCH1-211ENST00000509638 MAGEH1Q9H213 219 aa30.35■■■□□ 2.45
LIMCH1-211ENST00000509638 EPHX3Q9H6B9 360 aa30.35■■■□□ 2.45
LIMCH1-211ENST00000509638 ELOVL2Q9NXB9 296 aa30.35■■■□□ 2.45
LIMCH1-211ENST00000509638 hCG_1818297A0A087WSY0 165 aa30.34■■■□□ 2.45
LIMCH1-211ENST00000509638 ANTXRLA6NF34 631 aa30.34■■■□□ 2.45
LIMCH1-211ENST00000509638 MFSD11O43934 449 aa30.34■■■□□ 2.45
LIMCH1-211ENST00000509638 PYGMP11217 842 aa30.34■■■□□ 2.45
LIMCH1-211ENST00000509638 CHRNB1P11230 501 aa30.34■■■□□ 2.45
LIMCH1-211ENST00000509638 KRT10P13645 584 aa30.34■■■□□ 2.45
LIMCH1-211ENST00000509638 POLR2EP19388 210 aaKnown RBP30.34■■■□□ 2.45
LIMCH1-211ENST00000509638 SERPINB6P35237 376 aa30.34■■■□□ 2.45
LIMCH1-211ENST00000509638 ACVRL1P37023 503 aa30.34■■■□□ 2.45
LIMCH1-211ENST00000509638 ETFBP38117 255 aa30.34■■■□□ 2.45
LIMCH1-211ENST00000509638 PLK1P53350 603 aa30.34■■■□□ 2.45
LIMCH1-211ENST00000509638 PARP15Q460N3 678 aa30.34■■■□□ 2.45
LIMCH1-211ENST00000509638 KAZNQ674X7 775 aa30.34■■■□□ 2.45
LIMCH1-211ENST00000509638 DCAF4L2Q8NA75 395 aa30.34■■■□□ 2.45
LIMCH1-211ENST00000509638 MAK16Q9BXY0 300 aaKnown RBP30.34■■■□□ 2.45
LIMCH1-211ENST00000509638 LRRC19Q9H756 370 aa30.34■■■□□ 2.45
LIMCH1-211ENST00000509638 ATP13A1Q9HD20 1204 aa30.34■■■□□ 2.45
LIMCH1-211ENST00000509638 JRKLQ9Y4A0 524 aa30.34■■■□□ 2.45
LIMCH1-211ENST00000509638 RASA4BC9J798 803 aa30.33■■■□□ 2.45
LIMCH1-211ENST00000509638 ENC1O14682 589 aa30.33■■■□□ 2.45
LIMCH1-211ENST00000509638 RASA4O43374 803 aa30.33■■■□□ 2.45
LIMCH1-211ENST00000509638 NDST2P52849 883 aa30.33■■■□□ 2.45
LIMCH1-211ENST00000509638 COPS2P61201 443 aa30.33■■■□□ 2.45
LIMCH1-211ENST00000509638 DYNLT1P63172 113 aa30.33■■■□□ 2.45
LIMCH1-211ENST00000509638 PPP2R5EQ16537 467 aa30.33■■■□□ 2.45
LIMCH1-211ENST00000509638 FBXO43Q4G163 708 aa30.33■■■□□ 2.45
LIMCH1-211ENST00000509638 AADACL2Q6P093 401 aa30.33■■■□□ 2.45
LIMCH1-211ENST00000509638 LZTR1Q8N653 840 aa30.33■■■□□ 2.45
LIMCH1-211ENST00000509638 ARHGEF2Q92974 986 aaKnown RBP30.33■■■□□ 2.45
LIMCH1-211ENST00000509638 HMCESQ96FZ2 354 aa30.33■■■□□ 2.45
LIMCH1-211ENST00000509638 PSMB7Q99436 277 aa30.33■■■□□ 2.45
LIMCH1-211ENST00000509638 SPON2Q9BUD6 331 aa30.33■■■□□ 2.45
LIMCH1-211ENST00000509638 C2orf49Q9BVC5 232 aaPredicted RBP30.33■■■□□ 2.45
LIMCH1-211ENST00000509638 RNF40O75150 1001 aa30.32■■■□□ 2.45
LIMCH1-211ENST00000509638 YBEYP58557 167 aaPredicted RBP30.32■■■□□ 2.45
LIMCH1-211ENST00000509638 GNG11P61952 73 aa30.32■■■□□ 2.45
LIMCH1-211ENST00000509638 DGKKQ5KSL6 1271 aa30.32■■■□□ 2.45
LIMCH1-211ENST00000509638 AFMIDQ63HM1 303 aa30.32■■■□□ 2.45
LIMCH1-211ENST00000509638 SLC9A4Q6AI14 798 aa30.32■■■□□ 2.45
LIMCH1-211ENST00000509638 IL31Q6EBC2 164 aa30.32■■■□□ 2.45
LIMCH1-211ENST00000509638 ZNF354CQ86Y25 554 aa30.32■■■□□ 2.45
LIMCH1-211ENST00000509638 ARHGAP12Q8IWW6 846 aa30.32■■■□□ 2.45
LIMCH1-211ENST00000509638 CYB5D2Q8WUJ1 264 aa30.32■■■□□ 2.45
LIMCH1-211ENST00000509638 OSBPL6Q9BZF3 934 aa30.32■■■□□ 2.45
LIMCH1-211ENST00000509638 ZDHHC4Q9NPG8 344 aa30.32■■■□□ 2.45
LIMCH1-211ENST00000509638 SHROOM3Q8TF72 1996 aa30.32■■■□□ 2.44
LIMCH1-211ENST00000509638 APOL1O14791 398 aa30.32■■■□□ 2.44
LIMCH1-211ENST00000509638 KIR2DL1P43626 348 aaPredicted RBP30.32■■■□□ 2.44
LIMCH1-211ENST00000509638 FZD5Q13467 585 aa30.32■■■□□ 2.44
LIMCH1-211ENST00000509638 PAFAH1B3Q15102 231 aaKnown RBP30.32■■■□□ 2.44
LIMCH1-211ENST00000509638 EGFLAMQ63HQ2 1017 aa30.32■■■□□ 2.44
LIMCH1-211ENST00000509638 Q6ZS52 159 aa30.32■■■□□ 2.44
LIMCH1-211ENST00000509638 PLD5Q8N7P1 536 aa30.32■■■□□ 2.44
LIMCH1-211ENST00000509638 ZNF513Q8N8E2 541 aaPredicted RBP30.32■■■□□ 2.44
LIMCH1-211ENST00000509638 UCMAQ8WVF2 138 aa30.32■■■□□ 2.44
LIMCH1-211ENST00000509638 TTC17Q96AE7 1141 aa30.32■■■□□ 2.44
LIMCH1-211ENST00000509638 LMAN1LQ9HAT1 526 aa30.32■■■□□ 2.44
LIMCH1-211ENST00000509638 VPS51Q9UID3 782 aa30.32■■■□□ 2.44
LIMCH1-211ENST00000509638 HCN2Q9UL51 889 aa30.32■■■□□ 2.44
LIMCH1-211ENST00000509638 STARD13Q9Y3M8 1113 aa30.32■■■□□ 2.44
LIMCH1-211ENST00000509638 SIT1Q9Y3P8 196 aa30.32■■■□□ 2.44
LIMCH1-211ENST00000509638 DFFAO00273 331 aa30.31■■■□□ 2.44
LIMCH1-211ENST00000509638 KCNK3O14649 394 aa30.31■■■□□ 2.44
LIMCH1-211ENST00000509638 SNAP91O60641 907 aa30.31■■■□□ 2.44
LIMCH1-211ENST00000509638 ATP5BP06576 529 aaKnown RBP30.31■■■□□ 2.44
LIMCH1-211ENST00000509638 CHRM1P11229 460 aaPredicted RBP30.31■■■□□ 2.44
LIMCH1-211ENST00000509638 GLDCP23378 1020 aa30.31■■■□□ 2.44
LIMCH1-211ENST00000509638 PTPN7P35236 360 aa30.31■■■□□ 2.44
LIMCH1-211ENST00000509638 CTSOP43234 321 aaPredicted RBP30.31■■■□□ 2.44
LIMCH1-211ENST00000509638 C2orf27AQ580R0 203 aa30.31■■■□□ 2.44
LIMCH1-211ENST00000509638 EMC10Q5UCC4 262 aa30.31■■■□□ 2.44
LIMCH1-211ENST00000509638 TP53INP2Q8IXH6 220 aa30.31■■■□□ 2.44
LIMCH1-211ENST00000509638 HEMGNQ9BXL5 484 aa30.31■■■□□ 2.44
LIMCH1-211ENST00000509638 OSBPL8Q9BZF1 889 aa30.31■■■□□ 2.44
LIMCH1-211ENST00000509638 SLC39A8Q9C0K1 460 aa30.31■■■□□ 2.44
LIMCH1-211ENST00000509638 CBX4O00257 560 aa30.3■■■□□ 2.44
LIMCH1-211ENST00000509638 TIMM44O43615 452 aa30.3■■■□□ 2.44
LIMCH1-211ENST00000509638 DLDP09622 509 aaKnown RBP30.3■■■□□ 2.44
LIMCH1-211ENST00000509638 TIE1P35590 1138 aa30.3■■■□□ 2.44
LIMCH1-211ENST00000509638 CETN2P41208 172 aa30.3■■■□□ 2.44
LIMCH1-211ENST00000509638 GBE1Q04446 702 aa30.3■■■□□ 2.44
LIMCH1-211ENST00000509638 ADCY2Q08462 1091 aa30.3■■■□□ 2.44
LIMCH1-211ENST00000509638 TFDP2Q14188 446 aa30.3■■■□□ 2.44
LIMCH1-211ENST00000509638 HERPUD2Q9BSE4 406 aa30.3■■■□□ 2.44
Retrieved 100 of 20,778 RNA–protein pairs in 68.1 ms