RNA–Protein interactions for RNA: ENST00000493695.1

SMC4-223, Transcript of structural maintenance of chromosomes 4, human

TSL 2

Gene SMC4, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SMC4-223	ENST00000493695	AAGAB	Q6PD74	315 aa		4.59	□□□□□ -1.67
SMC4-223	ENST00000493695	TMEM88	Q6PEY1	159 aa		4.59	□□□□□ -1.67
SMC4-223	ENST00000493695	FBXO38	Q6PIJ6	1188 aa		4.59	□□□□□ -1.67
SMC4-223	ENST00000493695	MIGA1	Q8NAN2	632 aa		4.59	□□□□□ -1.67
SMC4-223	ENST00000493695	NODAL	Q96S42	347 aa		4.59	□□□□□ -1.67
SMC4-223	ENST00000493695	SLC52A1	Q9NWF4	448 aa		4.59	□□□□□ -1.67
SMC4-223	ENST00000493695	RAB21	Q9UL25	225 aa		4.59	□□□□□ -1.67
SMC4-223	ENST00000493695	KCNJ13	O60928	360 aa		4.58	□□□□□ -1.68
SMC4-223	ENST00000493695	TAF5L	O75529	589 aa		4.58	□□□□□ -1.68
SMC4-223	ENST00000493695	KRT18	P05783	430 aa	Known RBP	4.58	□□□□□ -1.68
SMC4-223	ENST00000493695	MYL1	P05976	194 aa		4.58	□□□□□ -1.68
SMC4-223	ENST00000493695	SLC5A1	P13866	664 aa		4.58	□□□□□ -1.68
SMC4-223	ENST00000493695	GRK5	P34947	590 aa		4.58	□□□□□ -1.68
SMC4-223	ENST00000493695	CXCR3	P49682	368 aa		4.58	□□□□□ -1.68
SMC4-223	ENST00000493695	POU5F1B	Q06416	359 aa		4.58	□□□□□ -1.68
SMC4-223	ENST00000493695	ZNF543	Q08ER8	600 aa		4.58	□□□□□ -1.68
SMC4-223	ENST00000493695	AAK1	Q2M2I8	961 aa		4.58	□□□□□ -1.68
SMC4-223	ENST00000493695	WBP2NL	Q6ICG8	309 aa		4.58	□□□□□ -1.68
SMC4-223	ENST00000493695	DSTYK	Q6XUX3	929 aa		4.58	□□□□□ -1.68
SMC4-223	ENST00000493695	MDGA2	Q7Z553	956 aa		4.58	□□□□□ -1.68
SMC4-223	ENST00000493695	CLIP4	Q8N3C7	705 aa		4.58	□□□□□ -1.68
SMC4-223	ENST00000493695	HORMAD2	Q8N7B1	307 aa		4.58	□□□□□ -1.68
SMC4-223	ENST00000493695	MCRS1	Q96EZ8	462 aa		4.58	□□□□□ -1.68
SMC4-223	ENST00000493695	REXO5	Q96IC2	774 aa	Known RBP	4.58	□□□□□ -1.68
SMC4-223	ENST00000493695	FIZ1	Q96SL8	496 aa		4.58	□□□□□ -1.68
SMC4-223	ENST00000493695	IL21R	Q9HBE5	538 aa		4.58	□□□□□ -1.68
SMC4-223	ENST00000493695	FSCN3	Q9NQT6	498 aa		4.58	□□□□□ -1.68
SMC4-223	ENST00000493695	MYO1A	Q9UBC5	1043 aa		4.58	□□□□□ -1.68
SMC4-223	ENST00000493695	SLC12A4	Q9UP95	1085 aa		4.58	□□□□□ -1.68
SMC4-223	ENST00000493695	TBC1D3D	A0A087WVF3	549 aa		4.57	□□□□□ -1.68
SMC4-223	ENST00000493695	TBC1D3I	A0A087WXS9	549 aa		4.57	□□□□□ -1.68
SMC4-223	ENST00000493695	TBC1D3E	A0A087X179	549 aa		4.57	□□□□□ -1.68
SMC4-223	ENST00000493695	TBC1D3K	A0A087X1G2	549 aa		4.57	□□□□□ -1.68
SMC4-223	ENST00000493695	LINC01553	A4QN01	128 aa		4.57	□□□□□ -1.68
SMC4-223	ENST00000493695	CLEC18A	A5D8T8	446 aa		4.57	□□□□□ -1.68
SMC4-223	ENST00000493695	TBC1D3B	A6NDS4	549 aa		4.57	□□□□□ -1.68
SMC4-223	ENST00000493695	TBC1D3F	A6NER0	549 aa	Predicted RBP	4.57	□□□□□ -1.68
SMC4-223	ENST00000493695	OR2W5	A6NFC9	320 aa		4.57	□□□□□ -1.68
SMC4-223	ENST00000493695	C3orf70	A6NLC5	250 aa	Predicted RBP	4.57	□□□□□ -1.68
SMC4-223	ENST00000493695	TBC1D3L	B9A6J9	549 aa		4.57	□□□□□ -1.68
SMC4-223	ENST00000493695	NKX2-8	O15522	239 aa		4.57	□□□□□ -1.68
SMC4-223	ENST00000493695	CER1	O95813	267 aa		4.57	□□□□□ -1.68
SMC4-223	ENST00000493695	IGLV2-11	P01706	119 aa		4.57	□□□□□ -1.68
SMC4-223	ENST00000493695	UMOD	P07911	640 aa		4.57	□□□□□ -1.68
SMC4-223	ENST00000493695	SNRNP70	P08621	437 aa	Known RBP	4.57	□□□□□ -1.68
SMC4-223	ENST00000493695	TBC1D3H	P0C7X1	549 aa		4.57	□□□□□ -1.68
SMC4-223	ENST00000493695	GABRB3	P28472	473 aa		4.57	□□□□□ -1.68
SMC4-223	ENST00000493695	AVPR1A	P37288	418 aa		4.57	□□□□□ -1.68
SMC4-223	ENST00000493695	STT3A	P46977	705 aa		4.57	□□□□□ -1.68
SMC4-223	ENST00000493695	DLX5	P56178	289 aa		4.57	□□□□□ -1.68
SMC4-223	ENST00000493695	SAFB	Q15424	915 aa	Known RBP eCLIP	4.57	□□□□□ -1.68
SMC4-223	ENST00000493695	MAPKAPK3	Q16644	382 aa		4.57	□□□□□ -1.68
SMC4-223	ENST00000493695	MRGPRG-AS1	Q2M3A8	158 aa		4.57	□□□□□ -1.68
SMC4-223	ENST00000493695	TBC1D3G	Q6DHY5	549 aa		4.57	□□□□□ -1.68
SMC4-223	ENST00000493695	TBC1D3C	Q6IPX1	549 aa		4.57	□□□□□ -1.68
SMC4-223	ENST00000493695	RETSAT	Q6NUM9	610 aa		4.57	□□□□□ -1.68
SMC4-223	ENST00000493695	C8orf82	Q6P1X6	216 aa	Predicted RBP	4.57	□□□□□ -1.68
SMC4-223	ENST00000493695	C11orf96	Q7Z7L8	435 aa		4.57	□□□□□ -1.68
SMC4-223	ENST00000493695	CCDC146	Q8IYE0	955 aa		4.57	□□□□□ -1.68
SMC4-223	ENST00000493695	TBC1D3	Q8IZP1	549 aa	Predicted RBP	4.57	□□□□□ -1.68
SMC4-223	ENST00000493695	CLEC18C	Q8NCF0	446 aa		4.57	□□□□□ -1.68
SMC4-223	ENST00000493695	WBP2	Q969T9	261 aa		4.57	□□□□□ -1.68
SMC4-223	ENST00000493695	CCDC134	Q9H6E4	229 aa		4.57	□□□□□ -1.68
SMC4-223	ENST00000493695	TXNRD2	Q9NNW7	524 aa		4.57	□□□□□ -1.68
SMC4-223	ENST00000493695	RGL1	Q9NZL6	768 aa		4.57	□□□□□ -1.68
SMC4-223	ENST00000493695	TRPC5	Q9UL62	973 aa	Predicted RBP	4.57	□□□□□ -1.68
SMC4-223	ENST00000493695	MCIDAS	D6RGH6	385 aa		4.56	□□□□□ -1.68
SMC4-223	ENST00000493695	APAF1	O14727	1248 aa		4.56	□□□□□ -1.68
SMC4-223	ENST00000493695	ZNF12	P17014	697 aa		4.56	□□□□□ -1.68
SMC4-223	ENST00000493695	PPP3CC	P48454	512 aa		4.56	□□□□□ -1.68
SMC4-223	ENST00000493695	CYP2J2	P51589	502 aa		4.56	□□□□□ -1.68
SMC4-223	ENST00000493695	NUDT6	P53370	316 aa		4.56	□□□□□ -1.68
SMC4-223	ENST00000493695	HNF4G	Q14541	408 aa		4.56	□□□□□ -1.68
SMC4-223	ENST00000493695	DUSP6	Q16828	381 aa		4.56	□□□□□ -1.68
SMC4-223	ENST00000493695	KRTAP24-1	Q3LI83	254 aa		4.56	□□□□□ -1.68
SMC4-223	ENST00000493695	ARL13B	Q3SXY8	428 aa		4.56	□□□□□ -1.68
SMC4-223	ENST00000493695	COBLL1	Q53SF7	1204 aa		4.56	□□□□□ -1.68
SMC4-223	ENST00000493695	MUC20	Q8N307	709 aa	Predicted RBP	4.56	□□□□□ -1.68
SMC4-223	ENST00000493695	TMEM217	Q8N7C4	229 aa		4.56	□□□□□ -1.68
SMC4-223	ENST00000493695	KDM1B	Q8NB78	822 aa		4.56	□□□□□ -1.68
SMC4-223	ENST00000493695	GLIS1	Q8NBF1	620 aa		4.56	□□□□□ -1.68
SMC4-223	ENST00000493695	SVIP	Q8NHG7	77 aa		4.56	□□□□□ -1.68
SMC4-223	ENST00000493695	ACTR5	Q9H9F9	607 aa	Predicted RBP	4.56	□□□□□ -1.68
SMC4-223	ENST00000493695	KCNK9	Q9NPC2	374 aa		4.56	□□□□□ -1.68
SMC4-223	ENST00000493695	CHST12	Q9NRB3	414 aa		4.56	□□□□□ -1.68
SMC4-223	ENST00000493695	ARL15	Q9NXU5	204 aa		4.56	□□□□□ -1.68
SMC4-223	ENST00000493695	DONSON	Q9NYP3	566 aa		4.56	□□□□□ -1.68
SMC4-223	ENST00000493695	DTX4	Q9Y2E6	619 aa		4.56	□□□□□ -1.68
SMC4-223	ENST00000493695	NOTCH3	Q9UM47	2321 aa		4.56	□□□□□ -1.68
SMC4-223	ENST00000493695	TCRBV7S3A2	A0A539	114 aa		4.55	□□□□□ -1.68
SMC4-223	ENST00000493695	FAM234B	A2RU67	622 aa		4.55	□□□□□ -1.68
SMC4-223	ENST00000493695	PRR23A	A6NEV1	266 aa		4.55	□□□□□ -1.68
SMC4-223	ENST00000493695	KCNJ18	B7U540	433 aa		4.55	□□□□□ -1.68
SMC4-223	ENST00000493695	KRT36	O76013	467 aa		4.55	□□□□□ -1.68
SMC4-223	ENST00000493695	TSHR	P16473	764 aa		4.55	□□□□□ -1.68
SMC4-223	ENST00000493695	TM4SF4	P48230	202 aa		4.55	□□□□□ -1.68
SMC4-223	ENST00000493695	TLE3	Q04726	772 aa		4.55	□□□□□ -1.68
SMC4-223	ENST00000493695	GRSF1	Q12849	480 aa	Known RBP eCLIP	4.55	□□□□□ -1.68
SMC4-223	ENST00000493695	UBE4A	Q14139	1066 aa		4.55	□□□□□ -1.68
SMC4-223	ENST00000493695	ZNF569	Q5MCW4	686 aa		4.55	□□□□□ -1.68

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