RNA–Protein interactions for RNA: ENST00000493379.1

VPS52-219, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 5

Gene VPS52, Length 786 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-219ENST00000493379 SRSF5Q13243 272 aaKnown RBP7□□□□□ -1.29
VPS52-219ENST00000493379 MTA1Q13330 715 aa7□□□□□ -1.29
VPS52-219ENST00000493379 ITPRIPL2Q3MIP1 535 aa7□□□□□ -1.29
VPS52-219ENST00000493379 MPP7Q5T2T1 576 aa7□□□□□ -1.29
VPS52-219ENST00000493379 ARTNQ5T4W7 220 aa7□□□□□ -1.29
VPS52-219ENST00000493379 ZNF468Q5VIY5 522 aaPredicted RBP7□□□□□ -1.29
VPS52-219ENST00000493379 SYPL2Q5VXT5 272 aa7□□□□□ -1.29
VPS52-219ENST00000493379 RHBDF2Q6PJF5 856 aa7□□□□□ -1.29
VPS52-219ENST00000493379 MON1BQ7L1V2 547 aa7□□□□□ -1.29
VPS52-219ENST00000493379 ERICH1Q86X53 443 aa7□□□□□ -1.29
VPS52-219ENST00000493379 VWA5B2Q8N398 1253 aa7□□□□□ -1.29
VPS52-219ENST00000493379 CPXM2Q8N436 756 aa7□□□□□ -1.29
VPS52-219ENST00000493379 RNF214Q8ND24 703 aa7□□□□□ -1.29
VPS52-219ENST00000493379 ST13P5Q8NFI4 369 aaPredicted RBP7□□□□□ -1.29
VPS52-219ENST00000493379 CPA5Q8WXQ8 436 aa7□□□□□ -1.29
VPS52-219ENST00000493379 CENPIQ92674 756 aaPredicted RBP7□□□□□ -1.29
VPS52-219ENST00000493379 WBP2Q969T9 261 aa7□□□□□ -1.29
VPS52-219ENST00000493379 PLD4Q96BZ4 506 aa7□□□□□ -1.29
VPS52-219ENST00000493379 SHDQ96IW2 340 aa7□□□□□ -1.29
VPS52-219ENST00000493379 PIWIL1Q96J94 861 aaKnown RBP7□□□□□ -1.29
VPS52-219ENST00000493379 NPY6RQ99463 290 aa7□□□□□ -1.29
VPS52-219ENST00000493379 TRIM56Q9BRZ2 755 aaKnown RBP7□□□□□ -1.29
VPS52-219ENST00000493379 DCLK3Q9C098 648 aa7□□□□□ -1.29
VPS52-219ENST00000493379 SMG9Q9H0W8 520 aaKnown RBP7□□□□□ -1.29
VPS52-219ENST00000493379 SMOC1Q9H4F8 434 aa7□□□□□ -1.29
VPS52-219ENST00000493379 HAUS4Q9H6D7 363 aa7□□□□□ -1.29
VPS52-219ENST00000493379 BRD9Q9H8M2 597 aa7□□□□□ -1.29
VPS52-219ENST00000493379 ECT2Q9H8V3 914 aa7□□□□□ -1.29
VPS52-219ENST00000493379 MARCH2Q9P0N8 246 aa7□□□□□ -1.29
VPS52-219ENST00000493379 TLR6Q9Y2C9 796 aa7□□□□□ -1.29
VPS52-219ENST00000493379 URB1O60287 2271 aaKnown RBP7□□□□□ -1.29
VPS52-219ENST00000493379 POLQO75417 2590 aa6.99□□□□□ -1.29
VPS52-219ENST00000493379 OBSL1O75147 1896 aa6.99□□□□□ -1.29
VPS52-219ENST00000493379 NUP210Q8TEM1 1887 aaPredicted RBP6.99□□□□□ -1.29
VPS52-219ENST00000493379 KIF26AQ9ULI4 1882 aaPredicted RBP6.99□□□□□ -1.29
VPS52-219ENST00000493379 KANSL1LA0AUZ9 987 aa6.99□□□□□ -1.29
VPS52-219ENST00000493379 CDC14CA4D256 554 aa6.99□□□□□ -1.29
VPS52-219ENST00000493379 SIGLEC16A6NMB1 481 aa6.99□□□□□ -1.29
VPS52-219ENST00000493379 PDE2AO00408 941 aaPredicted RBP6.99□□□□□ -1.29
VPS52-219ENST00000493379 HOXC11O43248 304 aaPredicted RBP6.99□□□□□ -1.29
VPS52-219ENST00000493379 F9P00740 461 aa6.99□□□□□ -1.29
VPS52-219ENST00000493379 PENKP01210 267 aaPredicted RBP6.99□□□□□ -1.29
VPS52-219ENST00000493379 CALB1P05937 261 aa6.99□□□□□ -1.29
VPS52-219ENST00000493379 NCAM1P13591 858 aa6.99□□□□□ -1.29
VPS52-219ENST00000493379 TNFAIP3P21580 790 aa6.99□□□□□ -1.29
VPS52-219ENST00000493379 CHKAP35790 457 aa6.99□□□□□ -1.29
VPS52-219ENST00000493379 MAGEA9P43362 315 aa6.99□□□□□ -1.29
VPS52-219ENST00000493379 RPS9P46781 194 aaKnown RBP6.99□□□□□ -1.29
VPS52-219ENST00000493379 ATP11AP98196 1134 aa6.99□□□□□ -1.29
VPS52-219ENST00000493379 ARID5AQ03989 594 aa6.99□□□□□ -1.29
VPS52-219ENST00000493379 KLHL30Q0D2K2 578 aa6.99□□□□□ -1.29
VPS52-219ENST00000493379 IFRD2Q12894 506 aaPredicted RBP6.99□□□□□ -1.29
VPS52-219ENST00000493379 PWP1Q13610 501 aa6.99□□□□□ -1.29
VPS52-219ENST00000493379 DHCR24Q15392 516 aa6.99□□□□□ -1.29
VPS52-219ENST00000493379 TAF5Q15542 800 aa6.99□□□□□ -1.29
VPS52-219ENST00000493379 MLF2Q15773 248 aaPredicted RBP6.99□□□□□ -1.29
VPS52-219ENST00000493379 SPRED3Q2MJR0 410 aa6.99□□□□□ -1.29
VPS52-219ENST00000493379 SLC25A52Q3SY17 297 aa6.99□□□□□ -1.29
VPS52-219ENST00000493379 C5orf22Q49AR2 442 aa6.99□□□□□ -1.29
VPS52-219ENST00000493379 C10orf120Q5SQS8 335 aa6.99□□□□□ -1.29
VPS52-219ENST00000493379 ACBD5Q5T8D3 534 aaPredicted RBP6.99□□□□□ -1.29
VPS52-219ENST00000493379 TAF3Q5VWG9 929 aa6.99□□□□□ -1.29
VPS52-219ENST00000493379 NAA35Q5VZE5 725 aa6.99□□□□□ -1.29
VPS52-219ENST00000493379 PLEKHA7Q6IQ23 1121 aa6.99□□□□□ -1.29
VPS52-219ENST00000493379 CC2D1AQ6P1N0 951 aaPredicted RBP6.99□□□□□ -1.29
VPS52-219ENST00000493379 TOGARAM2Q6ZUX3 1019 aa6.99□□□□□ -1.29
VPS52-219ENST00000493379 FAM183BPQ6ZVS7 135 aa6.99□□□□□ -1.29
VPS52-219ENST00000493379 KIAA0907Q7Z7F0 614 aaPredicted RBP6.99□□□□□ -1.29
VPS52-219ENST00000493379 SYT9Q86SS6 491 aa6.99□□□□□ -1.29
VPS52-219ENST00000493379 UNC45BQ8IWX7 931 aa6.99□□□□□ -1.29
VPS52-219ENST00000493379 MCOLN2Q8IZK6 566 aa6.99□□□□□ -1.29
VPS52-219ENST00000493379 SYNPOQ8N3V7 929 aa6.99□□□□□ -1.29
VPS52-219ENST00000493379 MSANTD4Q8NCY6 345 aa6.99□□□□□ -1.29
VPS52-219ENST00000493379 C3orf20Q8ND61 904 aa6.99□□□□□ -1.29
VPS52-219ENST00000493379 DQX1Q8TE96 717 aaKnown RBP6.99□□□□□ -1.29
VPS52-219ENST00000493379 NANOS1Q8WY41 292 aaKnown RBP6.99□□□□□ -1.29
VPS52-219ENST00000493379 ATP2A3Q93084 1043 aa6.99□□□□□ -1.29
VPS52-219ENST00000493379 FCRL2Q96LA5 508 aaPredicted RBP6.99□□□□□ -1.29
VPS52-219ENST00000493379 RASSF4Q9H2L5 321 aa6.99□□□□□ -1.29
VPS52-219ENST00000493379 TRPC7Q9HCX4 862 aa6.99□□□□□ -1.29
VPS52-219ENST00000493379 ARHGEF3Q9NR81 526 aa6.99□□□□□ -1.29
VPS52-219ENST00000493379 SPHK2Q9NRA0 654 aa6.99□□□□□ -1.29
VPS52-219ENST00000493379 ST7Q9NRC1 585 aa6.99□□□□□ -1.29
VPS52-219ENST00000493379 DUS2Q9NX74 493 aaKnown RBP6.99□□□□□ -1.29
VPS52-219ENST00000493379 DNAJB12Q9NXW2 375 aaKnown RBP6.99□□□□□ -1.29
VPS52-219ENST00000493379 CFAP97Q9P2B7 532 aa6.99□□□□□ -1.29
VPS52-219ENST00000493379 ARHGAP20Q9P2F6 1191 aa6.99□□□□□ -1.29
VPS52-219ENST00000493379 SFMBT1Q9UHJ3 866 aa6.99□□□□□ -1.29
VPS52-219ENST00000493379 NUDT5Q9UKK9 219 aa6.99□□□□□ -1.29
VPS52-219ENST00000493379 AGO1Q9UL18 857 aaKnown RBP6.99□□□□□ -1.29
VPS52-219ENST00000493379 STRIP2Q9ULQ0 834 aa6.99□□□□□ -1.29
VPS52-219ENST00000493379 NAALADL1Q9UQQ1 740 aa6.99□□□□□ -1.29
VPS52-219ENST00000493379 CACNA1EQ15878 2313 aa6.99□□□□□ -1.29
VPS52-219ENST00000493379 A0A096LPE4 126 aa6.98□□□□□ -1.29
VPS52-219ENST00000493379 A0A1W2PPZ6 126 aa6.98□□□□□ -1.29
VPS52-219ENST00000493379 SLC12A8A0AV02 714 aa6.98□□□□□ -1.29
VPS52-219ENST00000493379 C2CD4BA6NLJ0 364 aa6.98□□□□□ -1.29
VPS52-219ENST00000493379 SPECC1L-ADORA2AF8WAN1 911 aa6.98□□□□□ -1.29
VPS52-219ENST00000493379 MDM4O15151 490 aa6.98□□□□□ -1.29
VPS52-219ENST00000493379 IRAK2O43187 625 aa6.98□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms