RNA–Protein interactions for RNA: ENST00000489853.1

SNRNP40-206, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

TSL 2

Gene SNRNP40, Length 1,928 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-206ENST00000489853 ETFBP38117 255 aa4.86□□□□□ -1.63
SNRNP40-206ENST00000489853 STAT3P40763 770 aa4.86□□□□□ -1.63
SNRNP40-206ENST00000489853 NR4A2P43354 598 aa4.86□□□□□ -1.63
SNRNP40-206ENST00000489853 LEPRP48357 1165 aaKnown RBP4.86□□□□□ -1.63
SNRNP40-206ENST00000489853 SLC26A2P50443 739 aa4.86□□□□□ -1.63
SNRNP40-206ENST00000489853 ZNF132P52740 706 aa4.86□□□□□ -1.63
SNRNP40-206ENST00000489853 ZNF135P52742 658 aaPredicted RBP4.86□□□□□ -1.63
SNRNP40-206ENST00000489853 EIF3EP60228 445 aaKnown RBP4.86□□□□□ -1.63
SNRNP40-206ENST00000489853 MRPS22P82650 360 aaKnown RBP4.86□□□□□ -1.63
SNRNP40-206ENST00000489853 TRIM28Q13263 835 aaKnown RBP4.86□□□□□ -1.63
SNRNP40-206ENST00000489853 GRM4Q14833 912 aa4.86□□□□□ -1.63
SNRNP40-206ENST00000489853 NFIL3Q16649 462 aa4.86□□□□□ -1.63
SNRNP40-206ENST00000489853 BMT2Q1RMZ1 405 aa4.86□□□□□ -1.63
SNRNP40-206ENST00000489853 SMU1Q2TAY7 513 aa4.86□□□□□ -1.63
SNRNP40-206ENST00000489853 PGS1Q32NB8 556 aa4.86□□□□□ -1.63
SNRNP40-206ENST00000489853 LRIT3Q3SXY7 679 aa4.86□□□□□ -1.63
SNRNP40-206ENST00000489853 AASDHQ4L235 1098 aaPredicted RBP4.86□□□□□ -1.63
SNRNP40-206ENST00000489853 NHSL2Q5HYW2 709 aa4.86□□□□□ -1.63
SNRNP40-206ENST00000489853 PERM1Q5SV97 790 aa4.86□□□□□ -1.63
SNRNP40-206ENST00000489853 CCNJQ5T5M9 372 aa4.86□□□□□ -1.63
SNRNP40-206ENST00000489853 RNASEH2BQ5TBB1 312 aaKnown RBP4.86□□□□□ -1.63
SNRNP40-206ENST00000489853 NDUFAF5Q5TEU4 345 aa4.86□□□□□ -1.63
SNRNP40-206ENST00000489853 UGT3A1Q6NUS8 523 aa4.86□□□□□ -1.63
SNRNP40-206ENST00000489853 GADL1Q6ZQY3 521 aa4.86□□□□□ -1.63
SNRNP40-206ENST00000489853 PLEKHG7Q6ZR37 379 aa4.86□□□□□ -1.63
SNRNP40-206ENST00000489853 KIAA0408Q6ZU52 694 aa4.86□□□□□ -1.63
SNRNP40-206ENST00000489853 TMEM26Q6ZUK4 368 aa4.86□□□□□ -1.63
SNRNP40-206ENST00000489853 ADAMTSL2Q86TH1 951 aa4.86□□□□□ -1.63
SNRNP40-206ENST00000489853 CPNE8Q86YQ8 564 aa4.86□□□□□ -1.63
SNRNP40-206ENST00000489853 ARMC8Q8IUR7 673 aa4.86□□□□□ -1.63
SNRNP40-206ENST00000489853 LACC1Q8IV20 430 aa4.86□□□□□ -1.63
SNRNP40-206ENST00000489853 PALM2Q8IXS6 379 aa4.86□□□□□ -1.63
SNRNP40-206ENST00000489853 RAVER1Q8IY67 606 aaKnown RBP4.86□□□□□ -1.63
SNRNP40-206ENST00000489853 AFAP1L2Q8N4X5 818 aa4.86□□□□□ -1.63
SNRNP40-206ENST00000489853 SNX31Q8N9S9 440 aa4.86□□□□□ -1.63
SNRNP40-206ENST00000489853 SIMC1Q8NDZ2 872 aa4.86□□□□□ -1.63
SNRNP40-206ENST00000489853 ABHD11Q8NFV4 315 aa4.86□□□□□ -1.63
SNRNP40-206ENST00000489853 LILRB1Q8NHL6 650 aaPredicted RBP4.86□□□□□ -1.63
SNRNP40-206ENST00000489853 PNPT1Q8TCS8 783 aaKnown RBP4.86□□□□□ -1.63
SNRNP40-206ENST00000489853 TBCKQ8TEA7 893 aa4.86□□□□□ -1.63
SNRNP40-206ENST00000489853 FNIP1Q8TF40 1166 aa4.86□□□□□ -1.63
SNRNP40-206ENST00000489853 RAB2BQ8WUD1 216 aa4.86□□□□□ -1.63
SNRNP40-206ENST00000489853 PDCD6IPQ8WUM4 868 aaKnown RBP4.86□□□□□ -1.63
SNRNP40-206ENST00000489853 SLC20A1Q8WUM9 679 aa4.86□□□□□ -1.63
SNRNP40-206ENST00000489853 AFG1LQ8WV93 481 aa4.86□□□□□ -1.63
SNRNP40-206ENST00000489853 SLC44A1Q8WWI5 657 aa4.86□□□□□ -1.63
SNRNP40-206ENST00000489853 TP53INP1Q96A56 240 aa4.86□□□□□ -1.63
SNRNP40-206ENST00000489853 VPS33AQ96AX1 596 aa4.86□□□□□ -1.63
SNRNP40-206ENST00000489853 CFAP36Q96G28 342 aa4.86□□□□□ -1.63
SNRNP40-206ENST00000489853 VMP1Q96GC9 406 aa4.86□□□□□ -1.63
SNRNP40-206ENST00000489853 PSKH2Q96QS6 385 aa4.86□□□□□ -1.63
SNRNP40-206ENST00000489853 INSM2Q96T92 566 aaPredicted RBP4.86□□□□□ -1.63
SNRNP40-206ENST00000489853 EBF4Q9BQW3 602 aa4.86□□□□□ -1.63
SNRNP40-206ENST00000489853 TMEM121Q9BTD3 319 aa4.86□□□□□ -1.63
SNRNP40-206ENST00000489853 KLF16Q9BXK1 252 aaPredicted RBP4.86□□□□□ -1.63
SNRNP40-206ENST00000489853 INTS2Q9H0H0 1204 aaKnown RBP4.86□□□□□ -1.63
SNRNP40-206ENST00000489853 RAD21L1Q9H4I0 556 aa4.86□□□□□ -1.63
SNRNP40-206ENST00000489853 SP140LQ9H930 580 aa4.86□□□□□ -1.63
SNRNP40-206ENST00000489853 ELP3Q9H9T3 547 aa4.86□□□□□ -1.63
SNRNP40-206ENST00000489853 PCDH12Q9NPG4 1184 aa4.86□□□□□ -1.63
SNRNP40-206ENST00000489853 DNAJC28Q9NX36 388 aa4.86□□□□□ -1.63
SNRNP40-206ENST00000489853 SEPT10Q9P0V9 454 aa4.86□□□□□ -1.63
SNRNP40-206ENST00000489853 DNMT3BQ9UBC3 853 aaKnown RBP4.86□□□□□ -1.63
SNRNP40-206ENST00000489853 PI4KBQ9UBF8 816 aa4.86□□□□□ -1.63
SNRNP40-206ENST00000489853 NXF1Q9UBU9 619 aaKnown RBP4.86□□□□□ -1.63
SNRNP40-206ENST00000489853 NIP7Q9Y221 180 aaKnown RBP eCLIP4.86□□□□□ -1.63
SNRNP40-206ENST00000489853 DDX52Q9Y2R4 599 aaKnown RBP eCLIP4.86□□□□□ -1.63
SNRNP40-206ENST00000489853 ST14Q9Y5Y6 855 aa4.86□□□□□ -1.63
SNRNP40-206ENST00000489853 A0A1B0GUL6 1792 aa4.86□□□□□ -1.63
SNRNP40-206ENST00000489853 SIPA1L3O60292 1781 aaPredicted RBP4.86□□□□□ -1.63
SNRNP40-206ENST00000489853 ARFGEF2Q9Y6D5 1785 aa4.86□□□□□ -1.63
SNRNP40-206ENST00000489853 KDM3AQ9Y4C1 1321 aa4.86□□□□□ -1.63
SNRNP40-206ENST00000489853 LOC100653049A0A140TA62 436 aa4.85□□□□□ -1.63
SNRNP40-206ENST00000489853 CCDC85CA6NKD9 419 aa4.85□□□□□ -1.63
SNRNP40-206ENST00000489853 A6NL46 340 aa4.85□□□□□ -1.63
SNRNP40-206ENST00000489853 TAF4O00268 1085 aa4.85□□□□□ -1.63
SNRNP40-206ENST00000489853 CCRL2O00421 344 aa4.85□□□□□ -1.63
SNRNP40-206ENST00000489853 NOP56O00567 594 aaKnown RBP4.85□□□□□ -1.63
SNRNP40-206ENST00000489853 MTSS1O43312 755 aa4.85□□□□□ -1.63
SNRNP40-206ENST00000489853 ZC3H11AO75152 810 aaKnown RBP eCLIP4.85□□□□□ -1.632e-6■■■■□ 21.1
SNRNP40-206ENST00000489853 DEAF1O75398 565 aaPredicted RBP4.85□□□□□ -1.63
SNRNP40-206ENST00000489853 RNASEH2AO75792 299 aaKnown RBP4.85□□□□□ -1.63
SNRNP40-206ENST00000489853 KRT34O76011 436 aa4.85□□□□□ -1.63
SNRNP40-206ENST00000489853 DDHD2O94830 711 aa4.85□□□□□ -1.63
SNRNP40-206ENST00000489853 KRT18P05783 430 aaKnown RBP4.85□□□□□ -1.63
SNRNP40-206ENST00000489853 BPGMP07738 259 aa4.85□□□□□ -1.63
SNRNP40-206ENST00000489853 RALAP11233 206 aa4.85□□□□□ -1.63
SNRNP40-206ENST00000489853 CYP7A1P22680 504 aa4.85□□□□□ -1.63
SNRNP40-206ENST00000489853 ME2P23368 584 aa4.85□□□□□ -1.63
SNRNP40-206ENST00000489853 MYF6P23409 242 aa4.85□□□□□ -1.63
SNRNP40-206ENST00000489853 GLRA2P23416 452 aa4.85□□□□□ -1.63
SNRNP40-206ENST00000489853 GRK2P25098 689 aa4.85□□□□□ -1.63
SNRNP40-206ENST00000489853 EEF1DP29692 281 aaKnown RBP4.85□□□□□ -1.63
SNRNP40-206ENST00000489853 SSTR1P30872 391 aa4.85□□□□□ -1.63
SNRNP40-206ENST00000489853 GRIK1P39086 918 aa4.85□□□□□ -1.63
SNRNP40-206ENST00000489853 OPRL1P41146 370 aa4.85□□□□□ -1.63
SNRNP40-206ENST00000489853 NAMPTP43490 491 aa4.85□□□□□ -1.63
SNRNP40-206ENST00000489853 CASP4P49662 377 aa4.85□□□□□ -1.63
SNRNP40-206ENST00000489853 ARSEP51690 589 aa4.85□□□□□ -1.63
SNRNP40-206ENST00000489853 ECT2LQ008S8 904 aa4.85□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms