RNA–Protein interactions for RNA: ENST00000485955.1

VPS41-213, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 571 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-213ENST00000485955 RFX2P48378 723 aa4.3□□□□□ -1.72
VPS41-213ENST00000485955 AP2B1P63010 937 aa4.3□□□□□ -1.72
VPS41-213ENST00000485955 CDK18Q07002 472 aa4.3□□□□□ -1.72
VPS41-213ENST00000485955 TBRG1Q3YBR2 411 aa4.3□□□□□ -1.72
VPS41-213ENST00000485955 LRRC24Q50LG9 513 aa4.3□□□□□ -1.72
VPS41-213ENST00000485955 ZNF585BQ52M93 769 aa4.3□□□□□ -1.72
VPS41-213ENST00000485955 ALG10Q5BKT4 473 aa4.3□□□□□ -1.72
VPS41-213ENST00000485955 ALG10BQ5I7T1 473 aa4.3□□□□□ -1.72
VPS41-213ENST00000485955 SULT6B1Q6IMI4 303 aa4.3□□□□□ -1.72
VPS41-213ENST00000485955 TRILQ7L0X0 811 aa4.3□□□□□ -1.72
VPS41-213ENST00000485955 RNF144BQ7Z419 303 aa4.3□□□□□ -1.72
VPS41-213ENST00000485955 CCDC25Q86WR0 208 aa4.3□□□□□ -1.72
VPS41-213ENST00000485955 SLC25A41Q8N5S1 370 aa4.3□□□□□ -1.72
VPS41-213ENST00000485955 ENDOVQ8N8Q3 282 aaKnown RBP4.3□□□□□ -1.72
VPS41-213ENST00000485955 STT3BQ8TCJ2 826 aa4.3□□□□□ -1.72
VPS41-213ENST00000485955 MIB2Q96AX9 1013 aa4.3□□□□□ -1.72
VPS41-213ENST00000485955 THOC3Q96J01 351 aaKnown RBP4.3□□□□□ -1.72
VPS41-213ENST00000485955 WDR77Q9BQA1 342 aaPredicted RBP4.3□□□□□ -1.72
VPS41-213ENST00000485955 POLDIP3Q9BY77 421 aaKnown RBP4.3□□□□□ -1.72
VPS41-213ENST00000485955 SLC22A11Q9NSA0 550 aa4.3□□□□□ -1.72
VPS41-213ENST00000485955 TMEM248Q9NWD8 314 aa4.3□□□□□ -1.72
VPS41-213ENST00000485955 LRFN1Q9P244 771 aa4.3□□□□□ -1.72
VPS41-213ENST00000485955 KCND3Q9UK17 655 aa4.3□□□□□ -1.72
VPS41-213ENST00000485955 A0A1B0GVT2 93 aa4.29□□□□□ -1.72
VPS41-213ENST00000485955 I6L893 689 aaPredicted RBP4.29□□□□□ -1.72
VPS41-213ENST00000485955 ACKR2O00590 384 aa4.29□□□□□ -1.72
VPS41-213ENST00000485955 T-ENOLP0DO92 83 aa4.29□□□□□ -1.72
VPS41-213ENST00000485955 TNFSF8P32971 234 aa4.29□□□□□ -1.72
VPS41-213ENST00000485955 DCTN1Q14203 1278 aa4.29□□□□□ -1.72
VPS41-213ENST00000485955 RPS6KA2Q15349 733 aa4.29□□□□□ -1.72
VPS41-213ENST00000485955 GPR162Q16538 588 aa4.29□□□□□ -1.72
VPS41-213ENST00000485955 PLK5Q496M5 336 aa4.29□□□□□ -1.72
VPS41-213ENST00000485955 AAGABQ6PD74 315 aa4.29□□□□□ -1.72
VPS41-213ENST00000485955 KLHL17Q6TDP4 642 aa4.29□□□□□ -1.72
VPS41-213ENST00000485955 Q6ZTK2 550 aa4.29□□□□□ -1.72
VPS41-213ENST00000485955 RRAGAQ7L523 313 aa4.29□□□□□ -1.72
VPS41-213ENST00000485955 RAB11FIP2Q7L804 512 aa4.29□□□□□ -1.72
VPS41-213ENST00000485955 CCDC117Q8IWD4 279 aaPredicted RBP4.29□□□□□ -1.72
VPS41-213ENST00000485955 FAM217AQ8IXS0 508 aa4.29□□□□□ -1.72
VPS41-213ENST00000485955 VPS52Q8N1B4 723 aa4.29□□□□□ -1.72
VPS41-213ENST00000485955 SLC2A12Q8TD20 617 aa4.29□□□□□ -1.72
VPS41-213ENST00000485955 C2CD4CQ8TF44 421 aa4.29□□□□□ -1.72
VPS41-213ENST00000485955 KCNJ9Q92806 393 aa4.29□□□□□ -1.72
VPS41-213ENST00000485955 NEUROG1Q92886 237 aa4.29□□□□□ -1.72
VPS41-213ENST00000485955 ARRDC3Q96B67 414 aa4.29□□□□□ -1.72
VPS41-213ENST00000485955 TMEM204Q9BSN7 226 aa4.29□□□□□ -1.72
VPS41-213ENST00000485955 KRTAP2-2Q9BYT5 123 aa4.29□□□□□ -1.72
VPS41-213ENST00000485955 PLAC1Q9HBJ0 212 aa4.29□□□□□ -1.72
VPS41-213ENST00000485955 Q9N2J8 555 aa4.29□□□□□ -1.72
VPS41-213ENST00000485955 DACT1Q9NYF0 836 aa4.29□□□□□ -1.72
VPS41-213ENST00000485955 C19orf53Q9UNZ5 99 aaPredicted RBP4.29□□□□□ -1.72
VPS41-213ENST00000485955 DAAM1Q9Y4D1 1078 aa4.29□□□□□ -1.72
VPS41-213ENST00000485955 TCF20Q9UGU0 1960 aaKnown RBP4.28□□□□□ -1.72
VPS41-213ENST00000485955 GAGE12JA6NER3 117 aa4.28□□□□□ -1.72
VPS41-213ENST00000485955 FAM90A20PA6NIJ5 464 aa4.28□□□□□ -1.72
VPS41-213ENST00000485955 NPIPB13A6NJU9 1138 aa4.28□□□□□ -1.72
VPS41-213ENST00000485955 C4orf47A7E2U8 309 aa4.28□□□□□ -1.72
VPS41-213ENST00000485955 NPIPB5A8MRT5 1133 aa4.28□□□□□ -1.72
VPS41-213ENST00000485955 LACTBL1A8MY62 500 aa4.28□□□□□ -1.72
VPS41-213ENST00000485955 NPIPB4C9JG80 1138 aa4.28□□□□□ -1.72
VPS41-213ENST00000485955 INAFM1C9JVW0 142 aa4.28□□□□□ -1.72
VPS41-213ENST00000485955 LCATP04180 440 aa4.28□□□□□ -1.72
VPS41-213ENST00000485955 PKMP14618 531 aaKnown RBP4.28□□□□□ -1.72
VPS41-213ENST00000485955 TYK2P29597 1187 aa4.28□□□□□ -1.72
VPS41-213ENST00000485955 STAT1P42224 750 aa4.28□□□□□ -1.72
VPS41-213ENST00000485955 RASSF2P50749 326 aa4.28□□□□□ -1.72
VPS41-213ENST00000485955 SELENOVP59797 346 aa4.28□□□□□ -1.72
VPS41-213ENST00000485955 ZXDBP98169 803 aa4.28□□□□□ -1.72
VPS41-213ENST00000485955 PKP1Q13835 747 aa4.28□□□□□ -1.72
VPS41-213ENST00000485955 UBE4AQ14139 1066 aa4.28□□□□□ -1.72
VPS41-213ENST00000485955 VWA5B1Q5TIE3 1220 aa4.28□□□□□ -1.72
VPS41-213ENST00000485955 C1orf228Q6PIY5 440 aa4.28□□□□□ -1.72
VPS41-213ENST00000485955 RASGRP2Q7LDG7 609 aa4.28□□□□□ -1.72
VPS41-213ENST00000485955 FBXL14Q8N1E6 418 aa4.28□□□□□ -1.72
VPS41-213ENST00000485955 RBMXL3Q8N7X1 1067 aaKnown RBP4.28□□□□□ -1.72
VPS41-213ENST00000485955 PRR26Q8N8Z3 221 aa4.28□□□□□ -1.72
VPS41-213ENST00000485955 GABPB2Q8TAK5 448 aaPredicted RBP4.28□□□□□ -1.72
VPS41-213ENST00000485955 OTUD7AQ8TE49 926 aaPredicted RBP4.28□□□□□ -1.72
VPS41-213ENST00000485955 C3orf49Q96BT1 292 aa4.28□□□□□ -1.72
VPS41-213ENST00000485955 RMDN3Q96TC7 470 aa4.28□□□□□ -1.72
VPS41-213ENST00000485955 NTPCRQ9BSD7 190 aaKnown RBP4.28□□□□□ -1.72
VPS41-213ENST00000485955 PCGF6Q9BYE7 350 aa4.28□□□□□ -1.72
VPS41-213ENST00000485955 TRIM31Q9BZY9 425 aa4.28□□□□□ -1.72
VPS41-213ENST00000485955 B3GNT4Q9C0J1 378 aa4.28□□□□□ -1.72
VPS41-213ENST00000485955 HIPK3Q9H422 1215 aa4.28□□□□□ -1.72
VPS41-213ENST00000485955 PLEKHB1Q9UF11 243 aaPredicted RBP4.28□□□□□ -1.72
VPS41-213ENST00000485955 PTGDR2Q9Y5Y4 395 aa4.28□□□□□ -1.72
VPS41-213ENST00000485955 RGS14O43566 566 aa4.27□□□□□ -1.73
VPS41-213ENST00000485955 CYP1A2P05177 515 aa4.27□□□□□ -1.73
VPS41-213ENST00000485955 CBSLP0DN79 551 aa4.27□□□□□ -1.73
VPS41-213ENST00000485955 CPA1P15085 419 aa4.27□□□□□ -1.73
VPS41-213ENST00000485955 CHN1P15882 459 aa4.27□□□□□ -1.73
VPS41-213ENST00000485955 SERPINA4P29622 427 aa4.27□□□□□ -1.73
VPS41-213ENST00000485955 AVPR2P30518 371 aa4.27□□□□□ -1.73
VPS41-213ENST00000485955 CBSP35520 551 aa4.27□□□□□ -1.73
VPS41-213ENST00000485955 MLH1P40692 756 aa4.27□□□□□ -1.73
VPS41-213ENST00000485955 PCP4P48539 62 aa4.27□□□□□ -1.73
VPS41-213ENST00000485955 PMS2P54278 862 aa4.27□□□□□ -1.73
VPS41-213ENST00000485955 TMPRSS3P57727 454 aa4.27□□□□□ -1.73
VPS41-213ENST00000485955 ABATP80404 500 aa4.27□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms