RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 ADAD1Q96M93 576 aaKnown RBP3.64□□□□□ -1.83
CCDC88A-212ENST00000474059 APOL5Q9BWW9 433 aa3.64□□□□□ -1.83
CCDC88A-212ENST00000474059 GAREM1Q9H706 876 aa3.64□□□□□ -1.83
CCDC88A-212ENST00000474059 CATSPERBQ9H7T0 1116 aa3.64□□□□□ -1.83
CCDC88A-212ENST00000474059 ARNT2Q9HBZ2 717 aa3.64□□□□□ -1.83
CCDC88A-212ENST00000474059 OCIAD1Q9NX40 245 aa3.64□□□□□ -1.83
CCDC88A-212ENST00000474059 UBE2J1Q9Y385 318 aaPredicted RBP3.64□□□□□ -1.83
CCDC88A-212ENST00000474059 NKX2-8O15522 239 aa3.63□□□□□ -1.83
CCDC88A-212ENST00000474059 NDST3O95803 873 aa3.63□□□□□ -1.83
CCDC88A-212ENST00000474059 LCKP06239 509 aa3.63□□□□□ -1.83
CCDC88A-212ENST00000474059 TSHRP16473 764 aa3.63□□□□□ -1.83
CCDC88A-212ENST00000474059 EGR1P18146 543 aa3.63□□□□□ -1.83
CCDC88A-212ENST00000474059 RPL17P18621 184 aaKnown RBP3.63□□□□□ -1.83
CCDC88A-212ENST00000474059 FGFR2P21802 821 aa3.63□□□□□ -1.83
CCDC88A-212ENST00000474059 SLC16A2P36021 539 aa3.63□□□□□ -1.83
CCDC88A-212ENST00000474059 THPOP40225 353 aa3.63□□□□□ -1.83
CCDC88A-212ENST00000474059 ZNF543Q08ER8 600 aa3.63□□□□□ -1.83
CCDC88A-212ENST00000474059 GALNT3Q14435 633 aa3.63□□□□□ -1.83
CCDC88A-212ENST00000474059 ALG10Q5BKT4 473 aa3.63□□□□□ -1.83
CCDC88A-212ENST00000474059 FSCBQ5H9T9 825 aa3.63□□□□□ -1.83
CCDC88A-212ENST00000474059 ALG10BQ5I7T1 473 aa3.63□□□□□ -1.83
CCDC88A-212ENST00000474059 C10orf76Q5T2E6 689 aa3.63□□□□□ -1.83
CCDC88A-212ENST00000474059 KSR2Q6VAB6 950 aa3.63□□□□□ -1.83
CCDC88A-212ENST00000474059 ATP11CQ8NB49 1132 aa3.63□□□□□ -1.83
CCDC88A-212ENST00000474059 LILRB1Q8NHL6 650 aaPredicted RBP3.63□□□□□ -1.83
CCDC88A-212ENST00000474059 FAM216AQ8WUB2 273 aa3.63□□□□□ -1.83
CCDC88A-212ENST00000474059 WBP2Q969T9 261 aa3.63□□□□□ -1.83
CCDC88A-212ENST00000474059 TCF7L2Q9NQB0 619 aa3.63□□□□□ -1.83
CCDC88A-212ENST00000474059 FBXO28Q9NVF7 368 aa3.63□□□□□ -1.83
CCDC88A-212ENST00000474059 CORO2BQ9UQ03 480 aa3.63□□□□□ -1.83
CCDC88A-212ENST00000474059 ADAM18Q9Y3Q7 739 aa3.63□□□□□ -1.83
CCDC88A-212ENST00000474059 IGLV5-52A0A0A0MRZ9 124 aa3.62□□□□□ -1.83
CCDC88A-212ENST00000474059 MS4A18H0YCH9 400 aa3.62□□□□□ -1.83
CCDC88A-212ENST00000474059 MYL1P05976 194 aa3.62□□□□□ -1.83
CCDC88A-212ENST00000474059 TRIM27P14373 513 aa3.62□□□□□ -1.83
CCDC88A-212ENST00000474059 FAM3BP58499 235 aaPredicted RBP3.62□□□□□ -1.83
CCDC88A-212ENST00000474059 TAS2R50P59544 299 aa3.62□□□□□ -1.83
CCDC88A-212ENST00000474059 TUBA1BP68363 451 aa3.62□□□□□ -1.83
CCDC88A-212ENST00000474059 RHAGQ02094 409 aa3.62□□□□□ -1.83
CCDC88A-212ENST00000474059 POU3F1Q03052 451 aaPredicted RBP3.62□□□□□ -1.83
CCDC88A-212ENST00000474059 CBFBQ13951 182 aa3.62□□□□□ -1.83
CCDC88A-212ENST00000474059 PLCB4Q15147 1175 aa3.62□□□□□ -1.83
CCDC88A-212ENST00000474059 P3H1Q32P28 736 aa3.62□□□□□ -1.83
CCDC88A-212ENST00000474059 ARL13AQ5H913 290 aaPredicted RBP3.62□□□□□ -1.83
CCDC88A-212ENST00000474059 WDR93Q6P2C0 686 aa3.62□□□□□ -1.83
CCDC88A-212ENST00000474059 KRT27Q7Z3Y8 459 aa3.62□□□□□ -1.83
CCDC88A-212ENST00000474059 FJX1Q86VR8 437 aa3.62□□□□□ -1.83
CCDC88A-212ENST00000474059 SRFBP1Q8NEF9 429 aaKnown RBP3.62□□□□□ -1.83
CCDC88A-212ENST00000474059 EIF3CQ99613 913 aaKnown RBP3.62□□□□□ -1.83
CCDC88A-212ENST00000474059 SARGQ9BW04 601 aa3.62□□□□□ -1.83
CCDC88A-212ENST00000474059 IGSF9Q9P2J2 1179 aa3.62□□□□□ -1.83
CCDC88A-212ENST00000474059 MYO1AQ9UBC5 1043 aa3.62□□□□□ -1.83
CCDC88A-212ENST00000474059 A0A1W2PPC4 97 aa3.61□□□□□ -1.83
CCDC88A-212ENST00000474059 STMND1H3BQB6 276 aa3.61□□□□□ -1.83
CCDC88A-212ENST00000474059 J3KTA2 159 aa3.61□□□□□ -1.83
CCDC88A-212ENST00000474059 VIPP01282 170 aa3.61□□□□□ -1.83
CCDC88A-212ENST00000474059 MYL4P12829 197 aa3.61□□□□□ -1.83
CCDC88A-212ENST00000474059 PPP3CCP48454 512 aa3.61□□□□□ -1.83
CCDC88A-212ENST00000474059 AMTP48728 403 aa3.61□□□□□ -1.83
CCDC88A-212ENST00000474059 CXCR3P49682 368 aa3.61□□□□□ -1.83
CCDC88A-212ENST00000474059 TAF6P49848 677 aa3.61□□□□□ -1.83
CCDC88A-212ENST00000474059 ADPRHP54922 357 aa3.61□□□□□ -1.83
CCDC88A-212ENST00000474059 AAK1Q2M2I8 961 aa3.61□□□□□ -1.83
CCDC88A-212ENST00000474059 COBLL1Q53SF7 1204 aa3.61□□□□□ -1.83
CCDC88A-212ENST00000474059 CEP85LQ5SZL2 805 aa3.61□□□□□ -1.83
CCDC88A-212ENST00000474059 CCAR1Q8IX12 1150 aaKnown RBP3.61□□□□□ -1.83
CCDC88A-212ENST00000474059 TMEM217Q8N7C4 229 aa3.61□□□□□ -1.83
CCDC88A-212ENST00000474059 CMASQ8NFW8 434 aaPredicted RBP3.61□□□□□ -1.83
CCDC88A-212ENST00000474059 BICD2Q8TD16 824 aa3.61□□□□□ -1.83
CCDC88A-212ENST00000474059 GRAMD1AQ96CP6 724 aa3.61□□□□□ -1.83
CCDC88A-212ENST00000474059 IGSF21Q96ID5 467 aa3.61□□□□□ -1.83
CCDC88A-212ENST00000474059 DUX5Q96PT3 197 aa3.61□□□□□ -1.83
CCDC88A-212ENST00000474059 PCGF6Q9BYE7 350 aa3.61□□□□□ -1.83
CCDC88A-212ENST00000474059 MAGEB5Q9BZ81 275 aa3.61□□□□□ -1.83
CCDC88A-212ENST00000474059 SFXN1Q9H9B4 322 aa3.61□□□□□ -1.83
CCDC88A-212ENST00000474059 DDX21Q9NR30 783 aaKnown RBP eCLIP3.61□□□□□ -1.83
CCDC88A-212ENST00000474059 CHST12Q9NRB3 414 aa3.61□□□□□ -1.83
CCDC88A-212ENST00000474059 FAM50BQ9Y247 325 aa3.61□□□□□ -1.83
CCDC88A-212ENST00000474059 TNFSF13BQ9Y275 285 aa3.61□□□□□ -1.83
CCDC88A-212ENST00000474059 VWA5AO00534 786 aa3.6□□□□□ -1.83
CCDC88A-212ENST00000474059 CFC1BP0CG36 223 aa3.6□□□□□ -1.83
CCDC88A-212ENST00000474059 CFC1P0CG37 223 aa3.6□□□□□ -1.83
CCDC88A-212ENST00000474059 PIK3CBP42338 1070 aa3.6□□□□□ -1.83
CCDC88A-212ENST00000474059 CRIP2P52943 208 aaPredicted RBP3.6□□□□□ -1.83
CCDC88A-212ENST00000474059 RPL15P61313 204 aaKnown RBP3.6□□□□□ -1.83
CCDC88A-212ENST00000474059 ARL16Q0P5N6 197 aa3.6□□□□□ -1.83
CCDC88A-212ENST00000474059 LRRC57Q8N9N7 239 aa3.6□□□□□ -1.83
CCDC88A-212ENST00000474059 GLIS1Q8NBF1 620 aa3.6□□□□□ -1.83
CCDC88A-212ENST00000474059 PJA1Q8NG27 643 aa3.6□□□□□ -1.83
CCDC88A-212ENST00000474059 SPATA20Q8TB22 786 aa3.6□□□□□ -1.83
CCDC88A-212ENST00000474059 TTC17Q96AE7 1141 aa3.6□□□□□ -1.83
CCDC88A-212ENST00000474059 PGLYRP2Q96PD5 576 aa3.6□□□□□ -1.83
CCDC88A-212ENST00000474059 CYP3A7-CYP3A51PA0A087WV96 503 aa3.59□□□□□ -1.83
CCDC88A-212ENST00000474059 ERI2A8K979 691 aaKnown RBP3.59□□□□□ -1.83
CCDC88A-212ENST00000474059 MCIDASD6RGH6 385 aa3.59□□□□□ -1.83
CCDC88A-212ENST00000474059 APAF1O14727 1248 aa3.59□□□□□ -1.83
CCDC88A-212ENST00000474059 PCDH17O14917 1159 aa3.59□□□□□ -1.83
CCDC88A-212ENST00000474059 PLIN1O60240 522 aa3.59□□□□□ -1.83
CCDC88A-212ENST00000474059 CYP3A7P24462 503 aa3.59□□□□□ -1.83
CCDC88A-212ENST00000474059 NUDT6P53370 316 aa3.59□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms