RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 FASTKQ14296 549 aaKnown RBP7.3□□□□□ -1.24
VPS53-204ENST00000437048 POLD3Q15054 466 aaPredicted RBP7.3□□□□□ -1.24
VPS53-204ENST00000437048 LRRC41Q15345 812 aa7.3□□□□□ -1.24
VPS53-204ENST00000437048 SLC39A10Q9ULF5 831 aa7.3□□□□□ -1.24
VPS53-204ENST00000437048 NAALADL1Q9UQQ1 740 aa7.3□□□□□ -1.24
VPS53-204ENST00000437048 NPHP3-ACAD11A0A0J9YXS1 232 aa7.3□□□□□ -1.24
VPS53-204ENST00000437048 SMIM22K7EJ46 135 aa7.3□□□□□ -1.24
VPS53-204ENST00000437048 TEX33O43247 280 aa7.3□□□□□ -1.24
VPS53-204ENST00000437048 TCEA3O75764 348 aa7.3□□□□□ -1.24
VPS53-204ENST00000437048 KCNH1O95259 989 aa7.3□□□□□ -1.24
VPS53-204ENST00000437048 EGFRP00533 1210 aa7.3□□□□□ -1.24
VPS53-204ENST00000437048 IFNGP01579 166 aa7.3□□□□□ -1.24
VPS53-204ENST00000437048 CD151P48509 253 aa7.3□□□□□ -1.24
VPS53-204ENST00000437048 GSSP48637 474 aa7.3□□□□□ -1.24
VPS53-204ENST00000437048 ALDH9A1P49189 494 aa7.3□□□□□ -1.24
VPS53-204ENST00000437048 PRKCEQ02156 737 aa7.3□□□□□ -1.24
VPS53-204ENST00000437048 PYHIN1Q6K0P9 492 aa7.3□□□□□ -1.24
VPS53-204ENST00000437048 EXT2Q93063 718 aa7.3□□□□□ -1.24
VPS53-204ENST00000437048 EIF2AK1Q9BQI3 630 aaKnown RBP7.3□□□□□ -1.24
VPS53-204ENST00000437048 PCDHA6Q9UN73 950 aa7.3□□□□□ -1.24
VPS53-204ENST00000437048 PCDHA8Q9Y5H6 950 aa7.3□□□□□ -1.24
VPS53-204ENST00000437048 MYBL2P10244 700 aa7.3□□□□□ -1.24
VPS53-204ENST00000437048 TMEM132DQ14C87 1099 aa7.3□□□□□ -1.24
VPS53-204ENST00000437048 ACSS3Q9H6R3 686 aa7.3□□□□□ -1.24
VPS53-204ENST00000437048 DPP7Q9UHL4 492 aa7.3□□□□□ -1.24
VPS53-204ENST00000437048 ANGPT4Q9Y264 503 aa7.3□□□□□ -1.24
VPS53-204ENST00000437048 DHRS12A0PJE2 317 aa7.3□□□□□ -1.24
VPS53-204ENST00000437048 TGM6O95932 706 aa7.3□□□□□ -1.24
VPS53-204ENST00000437048 LYNP07948 512 aa7.3□□□□□ -1.24
VPS53-204ENST00000437048 MYL3P08590 195 aa7.3□□□□□ -1.24
VPS53-204ENST00000437048 LBPP18428 481 aa7.3□□□□□ -1.24
VPS53-204ENST00000437048 LCN1P1Q5VSP4 162 aa7.3□□□□□ -1.24
VPS53-204ENST00000437048 TRIM74Q86UV6 250 aa7.3□□□□□ -1.24
VPS53-204ENST00000437048 TRIM73Q86UV7 250 aa7.3□□□□□ -1.24
VPS53-204ENST00000437048 CHSY1Q86X52 802 aa7.3□□□□□ -1.24
VPS53-204ENST00000437048 RASAL3Q86YV0 1011 aa7.3□□□□□ -1.24
VPS53-204ENST00000437048 STAG3L4Q8TBR4 150 aa7.3□□□□□ -1.24
VPS53-204ENST00000437048 CPNE2Q96FN4 548 aaPredicted RBP7.3□□□□□ -1.24
VPS53-204ENST00000437048 ZC3H10Q96K80 434 aaKnown RBP7.3□□□□□ -1.24
VPS53-204ENST00000437048 SLITRK1Q96PX8 696 aa7.3□□□□□ -1.24
VPS53-204ENST00000437048 PIGSQ96S52 555 aa7.3□□□□□ -1.24
VPS53-204ENST00000437048 ANKZF1Q9H8Y5 726 aa7.3□□□□□ -1.24
VPS53-204ENST00000437048 MIEF1Q9NQG6 463 aa7.3□□□□□ -1.24
VPS53-204ENST00000437048 H7C1W4 665 aa7.3□□□□□ -1.24
VPS53-204ENST00000437048 NPM3O75607 178 aaKnown RBP7.3□□□□□ -1.24
VPS53-204ENST00000437048 NPR2P20594 1047 aa7.3□□□□□ -1.24
VPS53-204ENST00000437048 PAGE2Q7Z2X7 111 aa7.3□□□□□ -1.24
VPS53-204ENST00000437048 DBR1Q9UK59 544 aaKnown RBP7.3□□□□□ -1.24
VPS53-204ENST00000437048 SPAG17Q6Q759 2223 aa7.3□□□□□ -1.24
VPS53-204ENST00000437048 STX16O14662 325 aa7.3□□□□□ -1.24
VPS53-204ENST00000437048 SERPINB7O75635 380 aa7.3□□□□□ -1.24
VPS53-204ENST00000437048 ANPEPP15144 967 aa7.3□□□□□ -1.24
VPS53-204ENST00000437048 CYP2A7P20853 494 aa7.3□□□□□ -1.24
VPS53-204ENST00000437048 BST2Q10589 180 aaKnown RBP7.3□□□□□ -1.24
VPS53-204ENST00000437048 TDRPQ86YL5 185 aa7.3□□□□□ -1.24
VPS53-204ENST00000437048 ATP6V0D2Q8N8Y2 350 aa7.3□□□□□ -1.24
VPS53-204ENST00000437048 LARGE1O95461 756 aa7.3□□□□□ -1.24
VPS53-204ENST00000437048 PPP3CCP48454 512 aa7.3□□□□□ -1.24
VPS53-204ENST00000437048 SULF1Q8IWU6 871 aa7.3□□□□□ -1.24
VPS53-204ENST00000437048 SDR42E1Q8WUS8 393 aa7.3□□□□□ -1.24
VPS53-204ENST00000437048 ZNF607Q96SK3 696 aa7.3□□□□□ -1.24
VPS53-204ENST00000437048 ROBO3Q96MS0 1386 aa7.29□□□□□ -1.24
VPS53-204ENST00000437048 CENPBD1B2RD01 187 aa7.29□□□□□ -1.24
VPS53-204ENST00000437048 PDE2AO00408 941 aaPredicted RBP7.29□□□□□ -1.24
VPS53-204ENST00000437048 ETV6P41212 452 aa7.29□□□□□ -1.24
VPS53-204ENST00000437048 FOLH1Q04609 750 aa7.29□□□□□ -1.24
VPS53-204ENST00000437048 SUZ12Q15022 739 aaKnown RBP7.29□□□□□ -1.24
VPS53-204ENST00000437048 PSTKQ8IV42 348 aaKnown RBP7.29□□□□□ -1.24
VPS53-204ENST00000437048 ZZZ3Q8IYH5 903 aa7.29□□□□□ -1.24
VPS53-204ENST00000437048 ZNF655Q8N720 491 aaPredicted RBP7.29□□□□□ -1.24
VPS53-204ENST00000437048 COPS7BQ9H9Q2 264 aaPredicted RBP7.29□□□□□ -1.24
VPS53-204ENST00000437048 CYP11B1P15538 503 aa7.29□□□□□ -1.24
VPS53-204ENST00000437048 CUL2Q13617 745 aa7.29□□□□□ -1.24
VPS53-204ENST00000437048 ANXA8L1Q5VT79 327 aa7.29□□□□□ -1.24
VPS53-204ENST00000437048 ADAMTSL2Q86TH1 951 aa7.29□□□□□ -1.24
VPS53-204ENST00000437048 SPERTQ8NA61 448 aa7.29□□□□□ -1.24
VPS53-204ENST00000437048 CAPSLQ8WWF8 208 aa7.29□□□□□ -1.24
VPS53-204ENST00000437048 BTF3L4Q96K17 158 aa7.29□□□□□ -1.24
VPS53-204ENST00000437048 CYP3A7-CYP3A51PA0A087WV96 503 aa7.29□□□□□ -1.24
VPS53-204ENST00000437048 CYP3A7P24462 503 aa7.29□□□□□ -1.24
VPS53-204ENST00000437048 UGT1A5P35504 534 aa7.29□□□□□ -1.24
VPS53-204ENST00000437048 CBX5P45973 191 aa7.29□□□□□ -1.24
VPS53-204ENST00000437048 ST8SIA6P61647 398 aa7.29□□□□□ -1.24
VPS53-204ENST00000437048 DPY19L2Q6NUT2 758 aa7.29□□□□□ -1.24
VPS53-204ENST00000437048 CHPFQ8IZ52 775 aa7.29□□□□□ -1.24
VPS53-204ENST00000437048 EMC1Q8N766 993 aa7.29□□□□□ -1.24
VPS53-204ENST00000437048 CHP1Q99653 195 aa7.29□□□□□ -1.24
VPS53-204ENST00000437048 STK32BQ9NY57 414 aa7.29□□□□□ -1.24
VPS53-204ENST00000437048 H7C2Y5 167 aa7.29□□□□□ -1.24
VPS53-204ENST00000437048 PGK1P00558 417 aa7.29□□□□□ -1.24
VPS53-204ENST00000437048 CCNCP24863 283 aa7.29□□□□□ -1.24
VPS53-204ENST00000437048 CHI3L1P36222 383 aaPredicted RBP7.29□□□□□ -1.24
VPS53-204ENST00000437048 NFE2Q16621 373 aaPredicted RBP7.29□□□□□ -1.24
VPS53-204ENST00000437048 DPP9Q86TI2 863 aa7.29□□□□□ -1.24
VPS53-204ENST00000437048 STK32CQ86UX6 486 aa7.29□□□□□ -1.24
VPS53-204ENST00000437048 CPNE9Q8IYJ1 553 aa7.29□□□□□ -1.24
VPS53-204ENST00000437048 CLCC1Q96S66 551 aa7.29□□□□□ -1.24
VPS53-204ENST00000437048 DISP2A7MBM2 1401 aa7.29□□□□□ -1.24
VPS53-204ENST00000437048 MRASO14807 208 aa7.29□□□□□ -1.24
VPS53-204ENST00000437048 SNRPB2P08579 225 aaKnown RBP7.29□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms