RNA–Protein interactions for RNA: ENST00000436724.5

PTPRF-207, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 2,168 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-207ENST00000436724 PPARGC1AQ9UBK2 798 aaKnown RBP21.6■■□□□ 1.05
PTPRF-207ENST00000436724 HBS1LQ9Y450 684 aaKnown RBP21.6■■□□□ 1.05
PTPRF-207ENST00000436724 CHD9Q3L8U1 2897 aa21.59■■□□□ 1.05
PTPRF-207ENST00000436724 ARHGAP42A6NI28 874 aa21.59■■□□□ 1.05
PTPRF-207ENST00000436724 TGM5O43548 720 aa21.59■■□□□ 1.05
PTPRF-207ENST00000436724 SESN2P58004 480 aaPredicted RBP21.59■■□□□ 1.05
PTPRF-207ENST00000436724 CBLBQ13191 982 aa21.59■■□□□ 1.05
PTPRF-207ENST00000436724 TMC7Q7Z402 723 aa21.59■■□□□ 1.05
PTPRF-207ENST00000436724 PRPF39Q86UA1 669 aaKnown RBP21.59■■□□□ 1.05
PTPRF-207ENST00000436724 CFAP52Q8N1V2 620 aa21.59■■□□□ 1.05
PTPRF-207ENST00000436724 MAML1Q92585 1016 aa21.59■■□□□ 1.05
PTPRF-207ENST00000436724 TRMT2BQ96GJ1 504 aaKnown RBP21.59■■□□□ 1.05
PTPRF-207ENST00000436724 CDK5RAP1Q96SZ6 601 aaKnown RBP21.59■■□□□ 1.05
PTPRF-207ENST00000436724 MLPHQ9BV36 600 aaPredicted RBP21.59■■□□□ 1.05
PTPRF-207ENST00000436724 ZNF334Q9HCZ1 680 aaPredicted RBP21.59■■□□□ 1.05
PTPRF-207ENST00000436724 TMEM248Q9NWD8 314 aa21.59■■□□□ 1.05
PTPRF-207ENST00000436724 FNIP2Q9P278 1114 aa21.59■■□□□ 1.05
PTPRF-207ENST00000436724 TRHDEQ9UKU6 1024 aa21.59■■□□□ 1.05
PTPRF-207ENST00000436724 ATXN2Q99700 1313 aaKnown RBP21.59■■□□□ 1.05
PTPRF-207ENST00000436724 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP21.58■■□□□ 1.05
PTPRF-207ENST00000436724 ATP2A2P16615 1042 aaKnown RBP21.58■■□□□ 1.05
PTPRF-207ENST00000436724 SLC6A4P31645 630 aa21.58■■□□□ 1.05
PTPRF-207ENST00000436724 LIG3P49916 1009 aa21.58■■□□□ 1.05
PTPRF-207ENST00000436724 KPNA1P52294 538 aaPredicted RBP21.58■■□□□ 1.05
PTPRF-207ENST00000436724 GEMIN4P57678 1058 aaKnown RBP21.58■■□□□ 1.05
PTPRF-207ENST00000436724 CDK16Q00536 496 aa21.58■■□□□ 1.05
PTPRF-207ENST00000436724 HERC6Q8IVU3 1022 aa21.58■■□□□ 1.05
PTPRF-207ENST00000436724 SRRM1Q8IYB3 904 aaKnown RBP21.58■■□□□ 1.05
PTPRF-207ENST00000436724 ZNF276Q8N554 614 aa21.58■■□□□ 1.05
PTPRF-207ENST00000436724 HMCESQ96FZ2 354 aa21.58■■□□□ 1.05
PTPRF-207ENST00000436724 RXFP1Q9HBX9 757 aa21.58■■□□□ 1.05
PTPRF-207ENST00000436724 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP21.58■■□□□ 1.05
PTPRF-207ENST00000436724 ANAPC1Q9H1A4 1944 aa21.58■■□□□ 1.05
PTPRF-207ENST00000436724 CARNS1A5YM72 827 aa21.58■■□□□ 1.04
PTPRF-207ENST00000436724 KLKB1P03952 638 aa21.58■■□□□ 1.04
PTPRF-207ENST00000436724 TACR2P21452 398 aa21.58■■□□□ 1.04
PTPRF-207ENST00000436724 EPHB3P54753 998 aa21.58■■□□□ 1.04
PTPRF-207ENST00000436724 SARNPP82979 210 aaKnown RBP21.58■■□□□ 1.04
PTPRF-207ENST00000436724 KBTBD12Q3ZCT8 623 aa21.58■■□□□ 1.04
PTPRF-207ENST00000436724 LRRC8BQ6P9F7 803 aa21.58■■□□□ 1.04
PTPRF-207ENST00000436724 UNC5AQ6ZN44 842 aa21.58■■□□□ 1.04
PTPRF-207ENST00000436724 SPRED2Q7Z698 418 aa21.58■■□□□ 1.04
PTPRF-207ENST00000436724 DENND1CQ8IV53 801 aa21.58■■□□□ 1.04
PTPRF-207ENST00000436724 UMODL1-AS1Q8N2C9 162 aa21.58■■□□□ 1.04
PTPRF-207ENST00000436724 MICALL1Q8N3F8 863 aa21.58■■□□□ 1.04
PTPRF-207ENST00000436724 WBP2Q969T9 261 aa21.58■■□□□ 1.04
PTPRF-207ENST00000436724 PSMG2Q969U7 264 aa21.58■■□□□ 1.04
PTPRF-207ENST00000436724 CYP2S1Q96SQ9 504 aa21.58■■□□□ 1.04
PTPRF-207ENST00000436724 PAFAH2Q99487 392 aa21.58■■□□□ 1.04
PTPRF-207ENST00000436724 VAT1Q99536 393 aa21.58■■□□□ 1.04
PTPRF-207ENST00000436724 ZNF212Q9UDV6 495 aa21.58■■□□□ 1.04
PTPRF-207ENST00000436724 TRDMT1O14717 391 aaKnown RBP21.57■■□□□ 1.04
PTPRF-207ENST00000436724 CXCL14O95715 111 aa21.57■■□□□ 1.04
PTPRF-207ENST00000436724 IRF1P10914 325 aa21.57■■□□□ 1.04
PTPRF-207ENST00000436724 MGAT1P26572 445 aa21.57■■□□□ 1.04
PTPRF-207ENST00000436724 ZNF33AQ06730 810 aa21.57■■□□□ 1.04
PTPRF-207ENST00000436724 FAM133BQ5BKY9 247 aaKnown RBP21.57■■□□□ 1.04
PTPRF-207ENST00000436724 TDRPQ86YL5 185 aa21.57■■□□□ 1.04
PTPRF-207ENST00000436724 OR52K1Q8NGK4 314 aa21.57■■□□□ 1.04
PTPRF-207ENST00000436724 SLC22A12Q96S37 553 aa21.57■■□□□ 1.04
PTPRF-207ENST00000436724 EBNA1BP2Q99848 306 aaKnown RBP21.57■■□□□ 1.04
PTPRF-207ENST00000436724 IPO11Q9UI26 975 aaKnown RBP21.57■■□□□ 1.04
PTPRF-207ENST00000436724 SLC4A7Q9Y6M7 1214 aa21.57■■□□□ 1.04
PTPRF-207ENST00000436724 DRGXA6NNA5 263 aa21.57■■□□□ 1.04
PTPRF-207ENST00000436724 MATN3O15232 486 aa21.57■■□□□ 1.04
PTPRF-207ENST00000436724 TLL1O43897 1013 aa21.57■■□□□ 1.04
PTPRF-207ENST00000436724 OAS1P00973 400 aaKnown RBP21.57■■□□□ 1.04
PTPRF-207ENST00000436724 CHN1P15882 459 aa21.57■■□□□ 1.04
PTPRF-207ENST00000436724 ERVFC1P60507 584 aa21.57■■□□□ 1.04
PTPRF-207ENST00000436724 CASC4Q6P4E1 433 aa21.57■■□□□ 1.04
PTPRF-207ENST00000436724 KLHDC10Q6PID8 442 aa21.57■■□□□ 1.04
PTPRF-207ENST00000436724 TAOK1Q7L7X3 1001 aa21.57■■□□□ 1.04
PTPRF-207ENST00000436724 LGI2Q8N0V4 545 aa21.57■■□□□ 1.04
PTPRF-207ENST00000436724 SPATA22Q8NHS9 363 aa21.57■■□□□ 1.04
PTPRF-207ENST00000436724 LRRC39Q96DD0 335 aa21.57■■□□□ 1.04
PTPRF-207ENST00000436724 OXNAD1Q96HP4 312 aaPredicted RBP21.57■■□□□ 1.04
PTPRF-207ENST00000436724 RAD9AQ99638 391 aa21.57■■□□□ 1.04
PTPRF-207ENST00000436724 APOL2Q9BQE5 337 aa21.57■■□□□ 1.04
PTPRF-207ENST00000436724 KIF9Q9HAQ2 790 aa21.57■■□□□ 1.04
PTPRF-207ENST00000436724 SMPD4Q9NXE4 827 aa21.57■■□□□ 1.04
PTPRF-207ENST00000436724 GGA2Q9UJY4 613 aa21.57■■□□□ 1.04
PTPRF-207ENST00000436724 RASA4BC9J798 803 aa21.56■■□□□ 1.04
PTPRF-207ENST00000436724 J3KR12 359 aa21.56■■□□□ 1.04
PTPRF-207ENST00000436724 SCAMP3O14828 347 aaKnown RBP21.56■■□□□ 1.04
PTPRF-207ENST00000436724 RASA4O43374 803 aa21.56■■□□□ 1.04
PTPRF-207ENST00000436724 ACSL4O60488 711 aa21.56■■□□□ 1.04
PTPRF-207ENST00000436724 STC2O76061 302 aa21.56■■□□□ 1.04
PTPRF-207ENST00000436724 AP2A1O95782 977 aa21.56■■□□□ 1.04
PTPRF-207ENST00000436724 C1QAP02745 245 aa21.56■■□□□ 1.04
PTPRF-207ENST00000436724 MLNP12872 115 aa21.56■■□□□ 1.04
PTPRF-207ENST00000436724 TSHRP16473 764 aa21.56■■□□□ 1.04
PTPRF-207ENST00000436724 ATP5DP30049 168 aa21.56■■□□□ 1.04
PTPRF-207ENST00000436724 HARS2P49590 506 aaKnown RBP21.56■■□□□ 1.04
PTPRF-207ENST00000436724 TTC31Q49AM3 519 aaPredicted RBP21.56■■□□□ 1.04
PTPRF-207ENST00000436724 KCTD11Q693B1 232 aa21.56■■□□□ 1.04
PTPRF-207ENST00000436724 ITPRIPL1Q6GPH6 555 aa21.56■■□□□ 1.04
PTPRF-207ENST00000436724 C6orf89Q6UWU4 347 aa21.56■■□□□ 1.04
PTPRF-207ENST00000436724 RIBC1Q8N443 379 aaPredicted RBP21.56■■□□□ 1.04
PTPRF-207ENST00000436724 IL12RB2Q99665 862 aa21.56■■□□□ 1.04
PTPRF-207ENST00000436724 SLC24A2Q9UI40 661 aa21.56■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms