RNA–Protein interactions for RNA: ENST00000429896.6

PTCH1-207, Transcript of patched 1, humanhuman

TSL 1 (best) BASIC

Gene PTCH1, Length 6,563 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-207ENST00000429896 ADCK2Q7Z695 626 aa13.19□□□□□ -0.3
PTCH1-207ENST00000429896 FAM129AQ9BZQ8 928 aa13.19□□□□□ -0.3
PTCH1-207ENST00000429896 CNOT10Q9H9A5 744 aaKnown RBP13.19□□□□□ -0.3
PTCH1-207ENST00000429896 LATS2Q9NRM7 1088 aa13.19□□□□□ -0.3
PTCH1-207ENST00000429896 NR1D1P20393 614 aa13.19□□□□□ -0.3
PTCH1-207ENST00000429896 HOXD13P35453 343 aa13.19□□□□□ -0.3
PTCH1-207ENST00000429896 GAD2Q05329 585 aa13.19□□□□□ -0.3
PTCH1-207ENST00000429896 FAM46CQ5VWP2 391 aa13.19□□□□□ -0.3
PTCH1-207ENST00000429896 C11orf96Q7Z7L8 435 aa13.19□□□□□ -0.3
PTCH1-207ENST00000429896 OSTM1Q86WC4 334 aa13.19□□□□□ -0.3
PTCH1-207ENST00000429896 MMGT1Q8N4V1 131 aa13.19□□□□□ -0.3
PTCH1-207ENST00000429896 TRIML2Q8N7C3 387 aa13.19□□□□□ -0.3
PTCH1-207ENST00000429896 ZMAT2Q96NC0 199 aaKnown RBP13.19□□□□□ -0.3
PTCH1-207ENST00000429896 APOL2Q9BQE5 337 aa13.19□□□□□ -0.3
PTCH1-207ENST00000429896 FAM153AQ9UHL3 310 aa13.19□□□□□ -0.3
PTCH1-207ENST00000429896 CHRM3P20309 590 aa13.18□□□□□ -0.3
PTCH1-207ENST00000429896 SERPINB9P50453 376 aa13.18□□□□□ -0.3
PTCH1-207ENST00000429896 VSNL1P62760 191 aa13.18□□□□□ -0.3
PTCH1-207ENST00000429896 USP10Q14694 798 aaKnown RBP13.18□□□□□ -0.3
PTCH1-207ENST00000429896 PAPD7Q5XG87 772 aaKnown RBP13.18□□□□□ -0.3
PTCH1-207ENST00000429896 MON1BQ7L1V2 547 aa13.18□□□□□ -0.3
PTCH1-207ENST00000429896 TMEM191CA6NGB0 347 aa13.18□□□□□ -0.3
PTCH1-207ENST00000429896 GOLGA8RI6L899 631 aa13.18□□□□□ -0.3
PTCH1-207ENST00000429896 GOT1P17174 413 aa13.18□□□□□ -0.3
PTCH1-207ENST00000429896 AAK1Q2M2I8 961 aa13.18□□□□□ -0.3
PTCH1-207ENST00000429896 RNF19BQ6ZMZ0 732 aa13.18□□□□□ -0.3
PTCH1-207ENST00000429896 POLNQ7Z5Q5 900 aa13.18□□□□□ -0.3
PTCH1-207ENST00000429896 RPAINQ86UA6 219 aa13.18□□□□□ -0.3
PTCH1-207ENST00000429896 VIPAS39Q9H9C1 493 aa13.18□□□□□ -0.3
PTCH1-207ENST00000429896 HSPA9P38646 679 aaKnown RBP13.18□□□□□ -0.3
PTCH1-207ENST00000429896 MAGEA4P43358 317 aa13.18□□□□□ -0.3
PTCH1-207ENST00000429896 USP45Q70EL2 814 aa13.18□□□□□ -0.3
PTCH1-207ENST00000429896 C8orf48Q96LL4 319 aa13.18□□□□□ -0.3
PTCH1-207ENST00000429896 MTMR11A4FU01 709 aa13.18□□□□□ -0.3
PTCH1-207ENST00000429896 RHOBTB1O94844 696 aa13.18□□□□□ -0.3
PTCH1-207ENST00000429896 MTM1Q13496 603 aa13.18□□□□□ -0.3
PTCH1-207ENST00000429896 UGT3A1Q6NUS8 523 aa13.18□□□□□ -0.3
PTCH1-207ENST00000429896 CFAP52Q8N1V2 620 aa13.18□□□□□ -0.3
PTCH1-207ENST00000429896 TBL1YQ9BQ87 522 aa13.18□□□□□ -0.3
PTCH1-207ENST00000429896 FGFR1OP2Q9NVK5 253 aa13.18□□□□□ -0.3
PTCH1-207ENST00000429896 MIOSQ9NXC5 875 aa13.18□□□□□ -0.3
PTCH1-207ENST00000429896 MPP6Q9NZW5 540 aa13.18□□□□□ -0.3
PTCH1-207ENST00000429896 DDHD2O94830 711 aa13.18□□□□□ -0.3
PTCH1-207ENST00000429896 CYP1A1P04798 512 aaPredicted RBP13.18□□□□□ -0.3
PTCH1-207ENST00000429896 SPRP35270 261 aaPredicted RBP13.18□□□□□ -0.3
PTCH1-207ENST00000429896 PLEKHA7Q6IQ23 1121 aa13.18□□□□□ -0.3
PTCH1-207ENST00000429896 CXorf40AQ8TE69 158 aa13.18□□□□□ -0.3
PTCH1-207ENST00000429896 BTN2A2Q8WVV5 523 aa13.18□□□□□ -0.3
PTCH1-207ENST00000429896 PITPNM3Q9BZ71 974 aa13.18□□□□□ -0.3
PTCH1-207ENST00000429896 RAB23Q9ULC3 237 aa13.18□□□□□ -0.3
PTCH1-207ENST00000429896 hCG_2014768A0A024R1R8 64 aa13.17□□□□□ -0.3
PTCH1-207ENST00000429896 CARSP49589 748 aaKnown RBP13.17□□□□□ -0.3
PTCH1-207ENST00000429896 TAC4Q86UU9 113 aa13.17□□□□□ -0.3
PTCH1-207ENST00000429896 RNF168Q8IYW5 571 aaPredicted RBP13.17□□□□□ -0.3
PTCH1-207ENST00000429896 SCAMP5Q8TAC9 235 aa13.17□□□□□ -0.3
PTCH1-207ENST00000429896 PTPRHQ9HD43 1115 aa13.17□□□□□ -0.3
PTCH1-207ENST00000429896 SIX2Q9NPC8 291 aa13.17□□□□□ -0.3
PTCH1-207ENST00000429896 KCNK1O00180 336 aa13.17□□□□□ -0.3
PTCH1-207ENST00000429896 HDAC4P56524 1084 aa13.17□□□□□ -0.3
PTCH1-207ENST00000429896 CLLU1OSQ5K130 101 aa13.17□□□□□ -0.3
PTCH1-207ENST00000429896 HIBCHQ6NVY1 386 aaPredicted RBP13.17□□□□□ -0.3
PTCH1-207ENST00000429896 CHST9Q7L1S5 443 aa13.17□□□□□ -0.3
PTCH1-207ENST00000429896 C9orf72Q96LT7 481 aa13.17□□□□□ -0.3
PTCH1-207ENST00000429896 SIX4Q9UIU6 781 aa13.17□□□□□ -0.3
PTCH1-207ENST00000429896 LRRC37AA6NMS7 1700 aa13.17□□□□□ -0.3
PTCH1-207ENST00000429896 MTHFRP42898 656 aa13.17□□□□□ -0.3
PTCH1-207ENST00000429896 CDH17Q12864 832 aa13.17□□□□□ -0.3
PTCH1-207ENST00000429896 OR8D1Q8WZ84 308 aa13.17□□□□□ -0.3
PTCH1-207ENST00000429896 RNF157Q96PX1 679 aa13.17□□□□□ -0.3
PTCH1-207ENST00000429896 GPR62Q9BZJ7 368 aa13.17□□□□□ -0.3
PTCH1-207ENST00000429896 ADRA1BP35368 520 aa13.17□□□□□ -0.3
PTCH1-207ENST00000429896 SLC45A4Q5BKX6 768 aa13.17□□□□□ -0.3
PTCH1-207ENST00000429896 PPP1R15BQ5SWA1 713 aa13.17□□□□□ -0.3
PTCH1-207ENST00000429896 E2F7Q96AV8 911 aa13.17□□□□□ -0.3
PTCH1-207ENST00000429896 PLK2Q9NYY3 685 aa13.17□□□□□ -0.3
PTCH1-207ENST00000429896 PKD2L2Q9NZM6 624 aa13.17□□□□□ -0.3
PTCH1-207ENST00000429896 SRP72O76094 671 aaKnown RBP13.17□□□□□ -0.3
PTCH1-207ENST00000429896 DEFB103AP81534 67 aa13.17□□□□□ -0.3
PTCH1-207ENST00000429896 SOX4Q06945 474 aaPredicted RBP13.17□□□□□ -0.3
PTCH1-207ENST00000429896 ATP13A3Q9H7F0 1226 aa13.17□□□□□ -0.3
PTCH1-207ENST00000429896 SFXN1Q9H9B4 322 aa13.17□□□□□ -0.3
PTCH1-207ENST00000429896 PCDH9Q9HC56 1237 aa13.17□□□□□ -0.3
PTCH1-207ENST00000429896 RAD54BQ9Y620 910 aa13.17□□□□□ -0.3
PTCH1-207ENST00000429896 RPS6KL1Q9Y6S9 549 aa13.17□□□□□ -0.3
PTCH1-207ENST00000429896 AGRPO00253 132 aa13.17□□□□□ -0.3
PTCH1-207ENST00000429896 CES2O00748 559 aa13.17□□□□□ -0.3
PTCH1-207ENST00000429896 NBNO60934 754 aa13.17□□□□□ -0.3
PTCH1-207ENST00000429896 MAGEA11P43364 429 aa13.17□□□□□ -0.3
PTCH1-207ENST00000429896 FAM26DQ5JW98 314 aa13.17□□□□□ -0.3
PTCH1-207ENST00000429896 UBXN11Q5T124 520 aa13.17□□□□□ -0.3
PTCH1-207ENST00000429896 C3orf62Q6ZUJ4 267 aa13.17□□□□□ -0.3
PTCH1-207ENST00000429896 SH3RF2Q8TEC5 729 aa13.17□□□□□ -0.3
PTCH1-207ENST00000429896 FAM167BQ9BTA0 163 aa13.17□□□□□ -0.3
PTCH1-207ENST00000429896 NDRG2Q9UN36 371 aaKnown RBP13.17□□□□□ -0.3
PTCH1-207ENST00000429896 PROZP22891 400 aa13.16□□□□□ -0.3
PTCH1-207ENST00000429896 GRASPQ7Z6J2 395 aaPredicted RBP13.16□□□□□ -0.3
PTCH1-207ENST00000429896 RGL4Q8IZJ4 473 aa13.16□□□□□ -0.3
PTCH1-207ENST00000429896 CELF5Q8N6W0 485 aaKnown RBP13.16□□□□□ -0.3
PTCH1-207ENST00000429896 TRIM55Q9BYV6 548 aa13.16□□□□□ -0.3
PTCH1-207ENST00000429896 ING2Q9H160 280 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms