RNA–Protein interactions for RNA: ENST00000409458.3

GPNMB-203, Transcript of glycoprotein nmb, humanhuman

TSL 1 (best) BASIC

Gene GPNMB, Length 1,673 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-203ENST00000409458 RASA4O43374 803 aa14.39□□□□□ -0.11
GPNMB-203ENST00000409458 GREM1O60565 184 aa14.39□□□□□ -0.11
GPNMB-203ENST00000409458 AVILO75366 819 aa14.39□□□□□ -0.11
GPNMB-203ENST00000409458 JCHAINP01591 159 aa14.39□□□□□ -0.11
GPNMB-203ENST00000409458 MAPKAPK2P49137 400 aa14.39□□□□□ -0.11
GPNMB-203ENST00000409458 IFI35P80217 286 aaPredicted RBP14.39□□□□□ -0.11
GPNMB-203ENST00000409458 CBX1P83916 185 aa14.39□□□□□ -0.11
GPNMB-203ENST00000409458 COL13A1Q5TAT6 717 aaPredicted RBP14.39□□□□□ -0.11
GPNMB-203ENST00000409458 CAND1Q86VP6 1230 aaKnown RBP14.39□□□□□ -0.11
GPNMB-203ENST00000409458 PDIK1LQ8N165 341 aa14.39□□□□□ -0.11
GPNMB-203ENST00000409458 MCUQ8NE86 351 aa14.39□□□□□ -0.11
GPNMB-203ENST00000409458 TTC25Q96NG3 672 aa14.39□□□□□ -0.11
GPNMB-203ENST00000409458 GCNAQ96QF7 691 aa14.39□□□□□ -0.11
GPNMB-203ENST00000409458 VAT1Q99536 393 aa14.39□□□□□ -0.11
GPNMB-203ENST00000409458 PBX4Q9BYU1 374 aa14.39□□□□□ -0.11
GPNMB-203ENST00000409458 EIF2B3Q9NR50 452 aaKnown RBP14.39□□□□□ -0.11
GPNMB-203ENST00000409458 RSPH14Q9UHP6 348 aa14.39□□□□□ -0.11
GPNMB-203ENST00000409458 IPO11Q9UI26 975 aaKnown RBP14.39□□□□□ -0.11
GPNMB-203ENST00000409458 TRHDEQ9UKU6 1024 aa14.39□□□□□ -0.11
GPNMB-203ENST00000409458 ARHGAP42A6NI28 874 aa14.38□□□□□ -0.11
GPNMB-203ENST00000409458 MATN3O15232 486 aa14.38□□□□□ -0.11
GPNMB-203ENST00000409458 POLR3GO15318 223 aaPredicted RBP14.38□□□□□ -0.11
GPNMB-203ENST00000409458 CKMP06732 381 aa14.38□□□□□ -0.11
GPNMB-203ENST00000409458 NFKB1P19838 968 aa14.38□□□□□ -0.11
GPNMB-203ENST00000409458 GRIA1P42261 906 aa14.38□□□□□ -0.11
GPNMB-203ENST00000409458 LMAN1P49257 510 aa14.38□□□□□ -0.11
GPNMB-203ENST00000409458 RPS24P62847 133 aaKnown RBP14.38□□□□□ -0.11
GPNMB-203ENST00000409458 KRT71Q3SY84 523 aa14.38□□□□□ -0.11
GPNMB-203ENST00000409458 RABGAP1LQ5R372 815 aa14.38□□□□□ -0.11
GPNMB-203ENST00000409458 TIGD7Q6NT04 549 aaPredicted RBP14.38□□□□□ -0.11
GPNMB-203ENST00000409458 Q6ZNB5 142 aa14.38□□□□□ -0.11
GPNMB-203ENST00000409458 CAPN12Q6ZSI9 719 aa14.38□□□□□ -0.11
GPNMB-203ENST00000409458 ADGRD2Q7Z7M1 963 aa14.38□□□□□ -0.11
GPNMB-203ENST00000409458 CNTD1Q8N815 330 aa14.38□□□□□ -0.11
GPNMB-203ENST00000409458 PDCD7Q8N8D1 485 aaKnown RBP14.38□□□□□ -0.11
GPNMB-203ENST00000409458 FBXO36Q8NEA4 188 aa14.38□□□□□ -0.11
GPNMB-203ENST00000409458 SHKBP1Q8TBC3 707 aa14.38□□□□□ -0.11
GPNMB-203ENST00000409458 EPS8L3Q8TE67 593 aaKnown RBP14.38□□□□□ -0.11
GPNMB-203ENST00000409458 TEKT5Q96M29 485 aa14.38□□□□□ -0.11
GPNMB-203ENST00000409458 FRMD8Q9BZ67 464 aaPredicted RBP14.38□□□□□ -0.11
GPNMB-203ENST00000409458 NKX2-4Q9H2Z4 354 aa14.38□□□□□ -0.11
GPNMB-203ENST00000409458 DONSONQ9NYP3 566 aa14.38□□□□□ -0.11
GPNMB-203ENST00000409458 DNMT3BQ9UBC3 853 aaKnown RBP14.38□□□□□ -0.11
GPNMB-203ENST00000409458 STOML2Q9UJZ1 356 aa14.38□□□□□ -0.11
GPNMB-203ENST00000409458 CHD5Q8TDI0 1954 aa14.37□□□□□ -0.11
GPNMB-203ENST00000409458 NOTCH4Q99466 2003 aa14.37□□□□□ -0.11
GPNMB-203ENST00000409458 TRAV19A0A0A6YYK7 116 aa14.37□□□□□ -0.11
GPNMB-203ENST00000409458 GOLGA6L10A6NI86 522 aa14.37□□□□□ -0.11
GPNMB-203ENST00000409458 RRP9O43818 475 aaKnown RBP14.37□□□□□ -0.11
GPNMB-203ENST00000409458 RAMP2O60895 175 aa14.37□□□□□ -0.11
GPNMB-203ENST00000409458 LATS1O95835 1130 aa14.37□□□□□ -0.11
GPNMB-203ENST00000409458 PEX11BO96011 259 aa14.37□□□□□ -0.11
GPNMB-203ENST00000409458 C1RP00736 705 aa14.37□□□□□ -0.11
GPNMB-203ENST00000409458 ABHD2P08910 425 aa14.37□□□□□ -0.11
GPNMB-203ENST00000409458 MYZAPP0CAP1 466 aa14.37□□□□□ -0.11
GPNMB-203ENST00000409458 CCNB1P14635 433 aa14.37□□□□□ -0.11
GPNMB-203ENST00000409458 OR1E1P30953 314 aa14.37□□□□□ -0.11
GPNMB-203ENST00000409458 HOXA9P31269 272 aa14.37□□□□□ -0.11
GPNMB-203ENST00000409458 MAGEA3P43357 314 aa14.37□□□□□ -0.11
GPNMB-203ENST00000409458 EPHA5P54756 1037 aa14.37□□□□□ -0.11
GPNMB-203ENST00000409458 GPX6P59796 221 aa14.37□□□□□ -0.11
GPNMB-203ENST00000409458 SLC7A9P82251 487 aa14.37□□□□□ -0.11
GPNMB-203ENST00000409458 ADGRF1Q5T601 910 aa14.37□□□□□ -0.11
GPNMB-203ENST00000409458 ITPRIPL1Q6GPH6 555 aa14.37□□□□□ -0.11
GPNMB-203ENST00000409458 PDE12Q6L8Q7 609 aaKnown RBP14.37□□□□□ -0.11
GPNMB-203ENST00000409458 RTL10Q7L3V2 364 aa14.37□□□□□ -0.11
GPNMB-203ENST00000409458 RBM23Q86U06 439 aaKnown RBP14.37□□□□□ -0.11
GPNMB-203ENST00000409458 LRRC49Q8IUZ0 686 aa14.37□□□□□ -0.11
GPNMB-203ENST00000409458 IGDCC3Q8IVU1 814 aa14.37□□□□□ -0.11
GPNMB-203ENST00000409458 MAML1Q92585 1016 aa14.37□□□□□ -0.11
GPNMB-203ENST00000409458 TCEAL4Q96EI5 215 aa14.37□□□□□ -0.11
GPNMB-203ENST00000409458 IL12RB2Q99665 862 aa14.37□□□□□ -0.11
GPNMB-203ENST00000409458 VPS18Q9P253 973 aa14.37□□□□□ -0.11
GPNMB-203ENST00000409458 CHMP2BQ9UQN3 213 aa14.37□□□□□ -0.11
GPNMB-203ENST00000409458 MYO7AQ13402 2215 aa14.37□□□□□ -0.11
GPNMB-203ENST00000409458 SMIM23A6NLE4 172 aa14.36□□□□□ -0.11
GPNMB-203ENST00000409458 J3KR12 359 aa14.36□□□□□ -0.11
GPNMB-203ENST00000409458 TSPAN3O60637 253 aa14.36□□□□□ -0.11
GPNMB-203ENST00000409458 MOSPD3O75425 235 aa14.36□□□□□ -0.11
GPNMB-203ENST00000409458 HLA-DQB2P05538 268 aa14.36□□□□□ -0.11
GPNMB-203ENST00000409458 ACVRL1P37023 503 aa14.36□□□□□ -0.11
GPNMB-203ENST00000409458 ELK3P41970 407 aa14.36□□□□□ -0.11
GPNMB-203ENST00000409458 CDH4P55283 916 aa14.36□□□□□ -0.11
GPNMB-203ENST00000409458 CBLBQ13191 982 aa14.36□□□□□ -0.11
GPNMB-203ENST00000409458 POLD3Q15054 466 aaPredicted RBP14.36□□□□□ -0.11
GPNMB-203ENST00000409458 PARP15Q460N3 678 aa14.36□□□□□ -0.11
GPNMB-203ENST00000409458 KCTD16Q68DU8 428 aa14.36□□□□□ -0.11
GPNMB-203ENST00000409458 OR52K2Q8NGK3 314 aa14.36□□□□□ -0.11
GPNMB-203ENST00000409458 GDPD5Q8WTR4 605 aa14.36□□□□□ -0.11
GPNMB-203ENST00000409458 PYROXD1Q8WU10 500 aa14.36□□□□□ -0.11
GPNMB-203ENST00000409458 DDX50Q9BQ39 737 aaKnown RBP14.36□□□□□ -0.11
GPNMB-203ENST00000409458 MLPHQ9BV36 600 aaPredicted RBP14.36□□□□□ -0.11
GPNMB-203ENST00000409458 TMEM109Q9BVC6 243 aa14.36□□□□□ -0.11
GPNMB-203ENST00000409458 SLC46A2Q9BY10 475 aa14.36□□□□□ -0.11
GPNMB-203ENST00000409458 SMG9Q9H0W8 520 aaKnown RBP14.36□□□□□ -0.11
GPNMB-203ENST00000409458 CENPHQ9H3R5 247 aa14.36□□□□□ -0.11
GPNMB-203ENST00000409458 HCFC2Q9Y5Z7 792 aa14.36□□□□□ -0.11
GPNMB-203ENST00000409458 TEX264Q9Y6I9 313 aa14.36□□□□□ -0.11
GPNMB-203ENST00000409458 A0A087WUV0 522 aaPredicted RBP14.36□□□□□ -0.11
GPNMB-203ENST00000409458 RHOP08100 348 aa14.36□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms