RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 SEMA5AQ13591 1074 aa18.63■□□□□ 0.57
CCDC88C-203ENST00000389856 TTC39BQ5VTQ0 682 aaPredicted RBP18.63■□□□□ 0.57
CCDC88C-203ENST00000389856 CCDC197Q8NCU1 140 aa18.63■□□□□ 0.57
CCDC88C-203ENST00000389856 PRMT1Q99873 361 aaKnown RBP18.63■□□□□ 0.57
CCDC88C-203ENST00000389856 C17orf80Q9BSJ5 609 aa18.63■□□□□ 0.57
CCDC88C-203ENST00000389856 HAUS2Q9NVX0 235 aa18.63■□□□□ 0.57
CCDC88C-203ENST00000389856 IGSF9Q9P2J2 1179 aa18.63■□□□□ 0.57
CCDC88C-203ENST00000389856 MTCL1Q9Y4B5 1905 aaKnown RBP18.62■□□□□ 0.57
CCDC88C-203ENST00000389856 GOLGA6L7A0A1B0GV03 622 aa18.62■□□□□ 0.57
CCDC88C-203ENST00000389856 ERI2A8K979 691 aaKnown RBP18.62■□□□□ 0.57
CCDC88C-203ENST00000389856 PSMD3O43242 534 aa18.62■□□□□ 0.57
CCDC88C-203ENST00000389856 APRTP07741 180 aa18.62■□□□□ 0.57
CCDC88C-203ENST00000389856 SPATA31D3P0C874 917 aa18.62■□□□□ 0.57
CCDC88C-203ENST00000389856 HOXA9P31269 272 aa18.62■□□□□ 0.57
CCDC88C-203ENST00000389856 PDIA2Q13087 525 aaKnown RBP18.62■□□□□ 0.57
CCDC88C-203ENST00000389856 PRPSAP1Q14558 356 aa18.62■□□□□ 0.57
CCDC88C-203ENST00000389856 FBXL22Q6P050 247 aa18.62■□□□□ 0.57
CCDC88C-203ENST00000389856 SPATA31D4Q6ZUB0 917 aa18.62■□□□□ 0.57
CCDC88C-203ENST00000389856 C14orf80Q86SX3 495 aa18.62■□□□□ 0.57
CCDC88C-203ENST00000389856 ZNF683Q8IZ20 524 aa18.62■□□□□ 0.57
CCDC88C-203ENST00000389856 CCDC33Q8N5R6 958 aa18.62■□□□□ 0.57
CCDC88C-203ENST00000389856 NSMCE1Q8WV22 266 aa18.62■□□□□ 0.57
CCDC88C-203ENST00000389856 FATE1Q969F0 183 aa18.62■□□□□ 0.57
CCDC88C-203ENST00000389856 KLF16Q9BXK1 252 aaPredicted RBP18.62■□□□□ 0.57
CCDC88C-203ENST00000389856 ETNK1Q9HBU6 452 aa18.62■□□□□ 0.57
CCDC88C-203ENST00000389856 TRPC7Q9HCX4 862 aa18.62■□□□□ 0.57
CCDC88C-203ENST00000389856 EURLQ9NYK6 297 aa18.62■□□□□ 0.57
CCDC88C-203ENST00000389856 PCDH10Q9P2E7 1040 aa18.62■□□□□ 0.57
CCDC88C-203ENST00000389856 SLC24A2Q9UI40 661 aa18.62■□□□□ 0.57
CCDC88C-203ENST00000389856 LSM7Q9UK45 103 aaKnown RBP18.62■□□□□ 0.57
CCDC88C-203ENST00000389856 NEBLO76041 1014 aa18.61■□□□□ 0.57
CCDC88C-203ENST00000389856 HNRNPA1P09651 372 aaKnown RBP eCLIP18.61■□□□□ 0.57
CCDC88C-203ENST00000389856 DDX6P26196 483 aaKnown RBP eCLIP18.61■□□□□ 0.575e-6■■■■■ 46.6
CCDC88C-203ENST00000389856 GABRR2P28476 465 aa18.61■□□□□ 0.57
CCDC88C-203ENST00000389856 CLCN4P51793 760 aa18.61■□□□□ 0.57
CCDC88C-203ENST00000389856 YBEYP58557 167 aaPredicted RBP18.61■□□□□ 0.57
CCDC88C-203ENST00000389856 WASHC5Q12768 1159 aa18.61■□□□□ 0.57
CCDC88C-203ENST00000389856 PARP15Q460N3 678 aa18.61■□□□□ 0.57
CCDC88C-203ENST00000389856 C5orf22Q49AR2 442 aa18.61■□□□□ 0.57
CCDC88C-203ENST00000389856 UBAP2Q5T6F2 1119 aaKnown RBP18.61■□□□□ 0.57
CCDC88C-203ENST00000389856 AFMIDQ63HM1 303 aa18.61■□□□□ 0.57
CCDC88C-203ENST00000389856 PID1Q7Z2X4 250 aa18.61■□□□□ 0.57
CCDC88C-203ENST00000389856 PIGWQ7Z7B1 504 aa18.61■□□□□ 0.57
CCDC88C-203ENST00000389856 ATP11CQ8NB49 1132 aa18.61■□□□□ 0.57
CCDC88C-203ENST00000389856 PYROXD1Q8WU10 500 aa18.61■□□□□ 0.57
CCDC88C-203ENST00000389856 LRRC39Q96DD0 335 aa18.61■□□□□ 0.57
CCDC88C-203ENST00000389856 CELF6Q96J87 481 aaKnown RBP18.61■□□□□ 0.57
CCDC88C-203ENST00000389856 PLCD4Q9BRC7 762 aa18.61■□□□□ 0.57
CCDC88C-203ENST00000389856 MPP6Q9NZW5 540 aa18.61■□□□□ 0.57
CCDC88C-203ENST00000389856 SAMD15Q9P1V8 674 aa18.61■□□□□ 0.57
CCDC88C-203ENST00000389856 ZNF510Q9Y2H8 683 aa18.61■□□□□ 0.57
CCDC88C-203ENST00000389856 DOCK4Q8N1I0 1966 aa18.6■□□□□ 0.57
CCDC88C-203ENST00000389856 ANAPC1Q9H1A4 1944 aa18.6■□□□□ 0.57
CCDC88C-203ENST00000389856 TRAV19A0A0A6YYK7 116 aa18.6■□□□□ 0.57
CCDC88C-203ENST00000389856 TYW5A2RUC4 315 aaKnown RBP18.6■□□□□ 0.57
CCDC88C-203ENST00000389856 SOBPA7XYQ1 873 aa18.6■□□□□ 0.57
CCDC88C-203ENST00000389856 E7ESA3 106 aa18.6■□□□□ 0.57
CCDC88C-203ENST00000389856 GOLGA8MH3BSY2 632 aa18.6■□□□□ 0.57
CCDC88C-203ENST00000389856 AP3B1O00203 1094 aa18.6■□□□□ 0.57
CCDC88C-203ENST00000389856 XYLBO75191 536 aa18.6■□□□□ 0.57
CCDC88C-203ENST00000389856 SPAG6O75602 509 aa18.6■□□□□ 0.57
CCDC88C-203ENST00000389856 STC2O76061 302 aa18.6■□□□□ 0.57
CCDC88C-203ENST00000389856 HDCP19113 662 aa18.6■□□□□ 0.57
CCDC88C-203ENST00000389856 PTPN3P26045 913 aa18.6■□□□□ 0.57
CCDC88C-203ENST00000389856 CORO1AP31146 461 aaKnown RBP18.6■□□□□ 0.57
CCDC88C-203ENST00000389856 KCNQ1P51787 676 aa18.6■□□□□ 0.57
CCDC88C-203ENST00000389856 ERVK-21P61565 698 aa18.6■□□□□ 0.57
CCDC88C-203ENST00000389856 IFT88Q13099 833 aa18.6■□□□□ 0.57
CCDC88C-203ENST00000389856 LACTB2Q53H82 288 aaPredicted RBP18.6■□□□□ 0.57
CCDC88C-203ENST00000389856 TEX44Q53QW1 395 aa18.6■□□□□ 0.57
CCDC88C-203ENST00000389856 ANKRD22Q5VYY1 191 aa18.6■□□□□ 0.57
CCDC88C-203ENST00000389856 ZBED8Q8IZ13 594 aa18.6■□□□□ 0.57
CCDC88C-203ENST00000389856 LGI2Q8N0V4 545 aa18.6■□□□□ 0.57
CCDC88C-203ENST00000389856 ZNF567Q8N184 647 aa18.6■□□□□ 0.57
CCDC88C-203ENST00000389856 TAB3Q8N5C8 712 aaPredicted RBP18.6■□□□□ 0.57
CCDC88C-203ENST00000389856 ABHD8Q96I13 439 aa18.6■□□□□ 0.57
CCDC88C-203ENST00000389856 KDM4CQ9H3R0 1056 aa18.6■□□□□ 0.57
CCDC88C-203ENST00000389856 IL21Q9HBE4 155 aa18.6■□□□□ 0.57
CCDC88C-203ENST00000389856 NKIRAS1Q9NYS0 192 aa18.6■□□□□ 0.57
CCDC88C-203ENST00000389856 ZMYM5Q9UJ78 669 aa18.6■□□□□ 0.57
CCDC88C-203ENST00000389856 TMEM120BA0PK00 339 aa18.6■□□□□ 0.57
CCDC88C-203ENST00000389856 HIDE1A8MVS5 230 aa18.6■□□□□ 0.57
CCDC88C-203ENST00000389856 MATN3O15232 486 aa18.6■□□□□ 0.57
CCDC88C-203ENST00000389856 RAMP2O60895 175 aa18.6■□□□□ 0.57
CCDC88C-203ENST00000389856 TMEM63AO94886 807 aa18.6■□□□□ 0.57
CCDC88C-203ENST00000389856 METTL18O95568 372 aa18.6■□□□□ 0.57
CCDC88C-203ENST00000389856 OLFM2O95897 454 aa18.6■□□□□ 0.57
CCDC88C-203ENST00000389856 CA3P07451 260 aa18.6■□□□□ 0.57
CCDC88C-203ENST00000389856 MLNP12872 115 aa18.6■□□□□ 0.57
CCDC88C-203ENST00000389856 MAGEA10P43363 369 aaPredicted RBP18.6■□□□□ 0.57
CCDC88C-203ENST00000389856 GPM6BQ13491 265 aa18.6■□□□□ 0.57
CCDC88C-203ENST00000389856 QPCTQ16769 361 aa18.6■□□□□ 0.57
CCDC88C-203ENST00000389856 CCDC38Q502W7 563 aa18.6■□□□□ 0.57
CCDC88C-203ENST00000389856 ARHGAP15Q53QZ3 475 aa18.6■□□□□ 0.57
CCDC88C-203ENST00000389856 ADGRF1Q5T601 910 aa18.6■□□□□ 0.57
CCDC88C-203ENST00000389856 DENND1CQ8IV53 801 aa18.6■□□□□ 0.57
CCDC88C-203ENST00000389856 ARHGAP12Q8IWW6 846 aa18.6■□□□□ 0.57
CCDC88C-203ENST00000389856 DYDC1Q8WWB3 177 aa18.6■□□□□ 0.57
CCDC88C-203ENST00000389856 SGSM3Q96HU1 749 aa18.6■□□□□ 0.57
CCDC88C-203ENST00000389856 SLC39A8Q9C0K1 460 aa18.6■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms