RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 PCSK1NQ9UHG2 260 aa10.48□□□□□ -0.73
VPS53-202ENST00000389040 NUDT5Q9UKK9 219 aa10.48□□□□□ -0.73
VPS53-202ENST00000389040 USP18Q9UMW8 372 aa10.48□□□□□ -0.73
VPS53-202ENST00000389040 TLDC2A0PJX2 215 aa10.48□□□□□ -0.73
VPS53-202ENST00000389040 SMIM23A6NLE4 172 aa10.48□□□□□ -0.73
VPS53-202ENST00000389040 RASGRF2O14827 1237 aa10.48□□□□□ -0.73
VPS53-202ENST00000389040 RGS16O15492 202 aaPredicted RBP10.48□□□□□ -0.73
VPS53-202ENST00000389040 GRAP2O75791 330 aa10.48□□□□□ -0.73
VPS53-202ENST00000389040 ACSL3O95573 720 aa10.48□□□□□ -0.73
VPS53-202ENST00000389040 CORO1AP31146 461 aaKnown RBP10.48□□□□□ -0.73
VPS53-202ENST00000389040 EIF2DP41214 584 aaKnown RBP10.48□□□□□ -0.73
VPS53-202ENST00000389040 ARSEP51690 589 aa10.48□□□□□ -0.73
VPS53-202ENST00000389040 DYNLT1P63172 113 aa10.48□□□□□ -0.73
VPS53-202ENST00000389040 DEUP1Q05D60 604 aa10.48□□□□□ -0.73
VPS53-202ENST00000389040 HIBCHQ6NVY1 386 aaPredicted RBP10.48□□□□□ -0.73
VPS53-202ENST00000389040 CEP128Q6ZU80 1094 aa10.48□□□□□ -0.73
VPS53-202ENST00000389040 BBS12Q6ZW61 710 aa10.48□□□□□ -0.73
VPS53-202ENST00000389040 TAC4Q86UU9 113 aa10.48□□□□□ -0.73
VPS53-202ENST00000389040 PSTKQ8IV42 348 aaKnown RBP10.48□□□□□ -0.73
VPS53-202ENST00000389040 GLIS1Q8NBF1 620 aa10.48□□□□□ -0.73
VPS53-202ENST00000389040 KCTD6Q8NC69 237 aa10.48□□□□□ -0.73
VPS53-202ENST00000389040 UHMK1Q8TAS1 419 aaKnown RBP10.48□□□□□ -0.73
VPS53-202ENST00000389040 SLC35B2Q8TB61 432 aa10.48□□□□□ -0.73
VPS53-202ENST00000389040 EPS8L3Q8TE67 593 aaKnown RBP10.48□□□□□ -0.73
VPS53-202ENST00000389040 FCRL2Q96LA5 508 aaPredicted RBP10.48□□□□□ -0.73
VPS53-202ENST00000389040 HAPLN3Q96S86 360 aa10.48□□□□□ -0.73
VPS53-202ENST00000389040 FOXP3Q9BZS1 431 aa10.48□□□□□ -0.73
VPS53-202ENST00000389040 EPN3Q9H201 632 aa10.48□□□□□ -0.73
VPS53-202ENST00000389040 CNOT10Q9H9A5 744 aaKnown RBP10.48□□□□□ -0.73
VPS53-202ENST00000389040 MARK1Q9P0L2 795 aa10.48□□□□□ -0.73
VPS53-202ENST00000389040 AGO1Q9UL18 857 aaKnown RBP10.48□□□□□ -0.73
VPS53-202ENST00000389040 C5orf42Q9H799 3197 aa10.48□□□□□ -0.73
VPS53-202ENST00000389040 SRRM3A6NNA2 597 aaPredicted RBP10.47□□□□□ -0.73
VPS53-202ENST00000389040 TNFRSF10AO00220 468 aa10.47□□□□□ -0.73
VPS53-202ENST00000389040 DNALI1O14645 258 aaPredicted RBP10.47□□□□□ -0.73
VPS53-202ENST00000389040 MDM4O15151 490 aa10.47□□□□□ -0.73
VPS53-202ENST00000389040 CST8O60676 142 aa10.47□□□□□ -0.73
VPS53-202ENST00000389040 TTC4O95801 387 aa10.47□□□□□ -0.73
VPS53-202ENST00000389040 AGTP01019 485 aa10.47□□□□□ -0.73
VPS53-202ENST00000389040 KLKB1P03952 638 aa10.47□□□□□ -0.73
VPS53-202ENST00000389040 CD48P09326 243 aa10.47□□□□□ -0.73
VPS53-202ENST00000389040 CHRM1P11229 460 aaPredicted RBP10.47□□□□□ -0.73
VPS53-202ENST00000389040 SULT1E1P49888 294 aa10.47□□□□□ -0.73
VPS53-202ENST00000389040 GAD2Q05329 585 aa10.47□□□□□ -0.73
VPS53-202ENST00000389040 SIGLEC14Q08ET2 396 aa10.47□□□□□ -0.73
VPS53-202ENST00000389040 CCDC14Q49A88 953 aa10.47□□□□□ -0.73
VPS53-202ENST00000389040 SLC44A4Q53GD3 710 aa10.47□□□□□ -0.73
VPS53-202ENST00000389040 TRNP1Q6NT89 227 aa10.47□□□□□ -0.73
VPS53-202ENST00000389040 NUDT18Q6ZVK8 323 aa10.47□□□□□ -0.73
VPS53-202ENST00000389040 RELL1Q8IUW5 271 aa10.47□□□□□ -0.73
VPS53-202ENST00000389040 ZCCHC9Q8N567 271 aaKnown RBP10.47□□□□□ -0.73
VPS53-202ENST00000389040 TTC13Q8NBP0 860 aa10.47□□□□□ -0.73
VPS53-202ENST00000389040 HSPH1Q92598 858 aa10.47□□□□□ -0.73
VPS53-202ENST00000389040 NTAN1Q96AB6 310 aa10.47□□□□□ -0.73
VPS53-202ENST00000389040 ROPN1BQ9BZX4 212 aaPredicted RBP10.47□□□□□ -0.73
VPS53-202ENST00000389040 STMN4Q9H169 189 aaPredicted RBP10.47□□□□□ -0.73
VPS53-202ENST00000389040 RABEP2Q9H5N1 569 aa10.47□□□□□ -0.73
VPS53-202ENST00000389040 ECT2Q9H8V3 914 aa10.47□□□□□ -0.73
VPS53-202ENST00000389040 ROPN1Q9HAT0 212 aaPredicted RBP10.47□□□□□ -0.73
VPS53-202ENST00000389040 SPHK2Q9NRA0 654 aa10.47□□□□□ -0.73
VPS53-202ENST00000389040 ARHGEF38Q9NXL2 777 aa10.47□□□□□ -0.73
VPS53-202ENST00000389040 MUTYHQ9UIF7 546 aa10.47□□□□□ -0.73
VPS53-202ENST00000389040 MRPS17Q9Y2R5 130 aaKnown RBP10.47□□□□□ -0.73
VPS53-202ENST00000389040 SGK1O00141 431 aa10.46□□□□□ -0.73
VPS53-202ENST00000389040 NDUFAB1O14561 156 aa10.46□□□□□ -0.73
VPS53-202ENST00000389040 NDC80O14777 642 aa10.46□□□□□ -0.73
VPS53-202ENST00000389040 HOXC11O43248 304 aaPredicted RBP10.46□□□□□ -0.73
VPS53-202ENST00000389040 ACSL4O60488 711 aa10.46□□□□□ -0.73
VPS53-202ENST00000389040 CYBBP04839 570 aa10.46□□□□□ -0.73
VPS53-202ENST00000389040 ZSCAN5DPP0CG00 497 aa10.46□□□□□ -0.73
VPS53-202ENST00000389040 PYGBP11216 843 aa10.46□□□□□ -0.73
VPS53-202ENST00000389040 ETS1P14921 441 aa10.46□□□□□ -0.73
VPS53-202ENST00000389040 SLCO1A2P46721 670 aa10.46□□□□□ -0.73
VPS53-202ENST00000389040 ZNF135P52742 658 aaPredicted RBP10.46□□□□□ -0.73
VPS53-202ENST00000389040 OTUD4Q01804 1114 aaKnown RBP10.46□□□□□ -0.73
VPS53-202ENST00000389040 GPS1Q13098 491 aa10.46□□□□□ -0.73
VPS53-202ENST00000389040 GRM2Q14416 872 aa10.46□□□□□ -0.73
VPS53-202ENST00000389040 E2F5Q15329 346 aa10.46□□□□□ -0.73
VPS53-202ENST00000389040 MPPE1Q53F39 396 aa10.46□□□□□ -0.73
VPS53-202ENST00000389040 TTC39BQ5VTQ0 682 aaPredicted RBP10.46□□□□□ -0.73
VPS53-202ENST00000389040 DENND1CQ8IV53 801 aa10.46□□□□□ -0.73
VPS53-202ENST00000389040 BBS7Q8IWZ6 715 aa10.46□□□□□ -0.73
VPS53-202ENST00000389040 SPDYE1Q8NFV5 336 aaPredicted RBP10.46□□□□□ -0.73
VPS53-202ENST00000389040 ACTL9Q8TC94 416 aa10.46□□□□□ -0.73
VPS53-202ENST00000389040 RNF34Q969K3 372 aa10.46□□□□□ -0.73
VPS53-202ENST00000389040 CFAP57Q96MR6 1250 aa10.46□□□□□ -0.73
VPS53-202ENST00000389040 PWWP2AQ96N64 755 aa10.46□□□□□ -0.73
VPS53-202ENST00000389040 NECAB3Q96P71 396 aaPredicted RBP10.46□□□□□ -0.73
VPS53-202ENST00000389040 PEBP4Q96S96 227 aa10.46□□□□□ -0.73
VPS53-202ENST00000389040 TBCBQ99426 244 aa10.46□□□□□ -0.73
VPS53-202ENST00000389040 TMEM121Q9BTD3 319 aa10.46□□□□□ -0.73
VPS53-202ENST00000389040 SLC2A11Q9BYW1 496 aa10.46□□□□□ -0.73
VPS53-202ENST00000389040 OSBPL6Q9BZF3 934 aa10.46□□□□□ -0.73
VPS53-202ENST00000389040 LINC00597Q9H2U6 94 aa10.46□□□□□ -0.73
VPS53-202ENST00000389040 PCDH9Q9HC56 1237 aa10.46□□□□□ -0.73
VPS53-202ENST00000389040 DNAJC17Q9NVM6 304 aaKnown RBP10.46□□□□□ -0.73
VPS53-202ENST00000389040 NINJ2Q9NZG7 142 aa10.46□□□□□ -0.73
VPS53-202ENST00000389040 RSPH14Q9UHP6 348 aa10.46□□□□□ -0.73
VPS53-202ENST00000389040 TPX2Q9ULW0 747 aaKnown RBP10.46□□□□□ -0.73
VPS53-202ENST00000389040 A0A0C4DFX4 3053 aa10.46□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms