RNA–Protein interactions for RNA: ENST00000380871.4

NKX3-1-201, Transcript of NK3 homeobox 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene NKX3-1, Length 3,271 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1-201ENST00000380871 CPSF2Q9P2I0 782 aaKnown RBP16.62■□□□□ 0.25
NKX3-1-201ENST00000380871 LRRC37A2A6NM11 1700 aa16.62■□□□□ 0.25
NKX3-1-201ENST00000380871 CCDC78A2IDD5 438 aa16.62■□□□□ 0.25
NKX3-1-201ENST00000380871 CASTOR2A6NHX0 329 aa16.62■□□□□ 0.25
NKX3-1-201ENST00000380871 SERPINB5P36952 375 aa16.62■□□□□ 0.25
NKX3-1-201ENST00000380871 BCAT1P54687 386 aa16.62■□□□□ 0.25
NKX3-1-201ENST00000380871 ZBTB6Q15916 424 aa16.62■□□□□ 0.25
NKX3-1-201ENST00000380871 ACAD11Q709F0 780 aa16.62■□□□□ 0.25
NKX3-1-201ENST00000380871 ZFAND2BQ8WV99 257 aa16.62■□□□□ 0.25
NKX3-1-201ENST00000380871 CDKL2Q92772 493 aa16.62■□□□□ 0.25
NKX3-1-201ENST00000380871 GCNAQ96QF7 691 aa16.62■□□□□ 0.25
NKX3-1-201ENST00000380871 RHOBTB2Q9BYZ6 727 aa16.62■□□□□ 0.25
NKX3-1-201ENST00000380871 H3BNX3 289 aa16.62■□□□□ 0.25
NKX3-1-201ENST00000380871 GOLGA8TH3BQL2 631 aa16.62■□□□□ 0.25
NKX3-1-201ENST00000380871 M0QYT0 321 aa16.62■□□□□ 0.25
NKX3-1-201ENST00000380871 NEMP1O14524 444 aa16.62■□□□□ 0.25
NKX3-1-201ENST00000380871 DGKIO75912 1065 aa16.62■□□□□ 0.25
NKX3-1-201ENST00000380871 LTFP02788 710 aa16.62■□□□□ 0.25
NKX3-1-201ENST00000380871 CNTFP26441 200 aa16.62■□□□□ 0.25
NKX3-1-201ENST00000380871 LILRA4P59901 499 aa16.62■□□□□ 0.25
NKX3-1-201ENST00000380871 GRAMD1BQ3KR37 738 aa16.62■□□□□ 0.25
NKX3-1-201ENST00000380871 SYPL2Q5VXT5 272 aa16.62■□□□□ 0.25
NKX3-1-201ENST00000380871 ZNF467Q7Z7K2 595 aaPredicted RBP16.62■□□□□ 0.25
NKX3-1-201ENST00000380871 OR52K1Q8NGK4 314 aa16.62■□□□□ 0.25
NKX3-1-201ENST00000380871 KLHL4Q9C0H6 718 aa16.62■□□□□ 0.25
NKX3-1-201ENST00000380871 WDR55Q9H6Y2 383 aaPredicted RBP16.62■□□□□ 0.25
NKX3-1-201ENST00000380871 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP16.62■□□□□ 0.25
NKX3-1-201ENST00000380871 DCDC2Q9UHG0 476 aa16.62■□□□□ 0.25
NKX3-1-201ENST00000380871 SORCS3Q9UPU3 1222 aa16.62■□□□□ 0.25
NKX3-1-201ENST00000380871 DICER1Q9UPY3 1922 aaKnown RBP16.61■□□□□ 0.25
NKX3-1-201ENST00000380871 SMIM35A0A1B0GVV1 85 aa16.61■□□□□ 0.25
NKX3-1-201ENST00000380871 C17orf102A2RUQ5 167 aa16.61■□□□□ 0.25
NKX3-1-201ENST00000380871 CAPN8A6NHC0 703 aa16.61■□□□□ 0.25
NKX3-1-201ENST00000380871 CPA3P15088 417 aa16.61■□□□□ 0.25
NKX3-1-201ENST00000380871 VCLP18206 1134 aa16.61■□□□□ 0.25
NKX3-1-201ENST00000380871 PGAM1P18669 254 aa16.61■□□□□ 0.25
NKX3-1-201ENST00000380871 HNRNPDQ14103 355 aaKnown RBP16.61■□□□□ 0.25
NKX3-1-201ENST00000380871 LRRC8BQ6P9F7 803 aa16.61■□□□□ 0.25
NKX3-1-201ENST00000380871 AAGABQ6PD74 315 aa16.61■□□□□ 0.25
NKX3-1-201ENST00000380871 KCNK16Q96T55 309 aa16.61■□□□□ 0.25
NKX3-1-201ENST00000380871 DNAJC28Q9NX36 388 aa16.61■□□□□ 0.25
NKX3-1-201ENST00000380871 TXNDC16Q9P2K2 825 aa16.61■□□□□ 0.25
NKX3-1-201ENST00000380871 INPP5FQ9Y2H2 1132 aa16.61■□□□□ 0.25
NKX3-1-201ENST00000380871 TRIP12Q14669 1992 aaPredicted RBP16.61■□□□□ 0.25
NKX3-1-201ENST00000380871 PALM2-AKAP2B1ALY0 433 aaPredicted RBP16.61■□□□□ 0.25
NKX3-1-201ENST00000380871 PGM3O95394 542 aa16.61■□□□□ 0.25
NKX3-1-201ENST00000380871 AMHP03971 560 aa16.61■□□□□ 0.25
NKX3-1-201ENST00000380871 CHRNGP07510 517 aa16.61■□□□□ 0.25
NKX3-1-201ENST00000380871 MED21Q13503 144 aa16.61■□□□□ 0.25
NKX3-1-201ENST00000380871 SATL1Q86VE3 508 aa16.61■□□□□ 0.25
NKX3-1-201ENST00000380871 NT5DC4Q86YG4 428 aa16.61■□□□□ 0.25
NKX3-1-201ENST00000380871 SPNS2Q8IVW8 549 aa16.61■□□□□ 0.25
NKX3-1-201ENST00000380871 ZNF567Q8N184 647 aa16.61■□□□□ 0.25
NKX3-1-201ENST00000380871 SIX6OS1Q8N1H7 587 aa16.61■□□□□ 0.25
NKX3-1-201ENST00000380871 ACMSDQ8TDX5 336 aa16.61■□□□□ 0.25
NKX3-1-201ENST00000380871 FAM192AQ9GZU8 254 aa16.61■□□□□ 0.25
NKX3-1-201ENST00000380871 OCEL1Q9H607 264 aa16.61■□□□□ 0.25
NKX3-1-201ENST00000380871 TNPO2O14787 897 aaKnown RBP16.6■□□□□ 0.25
NKX3-1-201ENST00000380871 CD4P01730 458 aa16.6■□□□□ 0.25
NKX3-1-201ENST00000380871 COX4I1P13073 169 aa16.6■□□□□ 0.25
NKX3-1-201ENST00000380871 ARL4AP40617 200 aa16.6■□□□□ 0.25
NKX3-1-201ENST00000380871 NR2C2P49116 596 aa16.6■□□□□ 0.25
NKX3-1-201ENST00000380871 BTKQ06187 659 aa16.6■□□□□ 0.25
NKX3-1-201ENST00000380871 MMEL1Q495T6 779 aa16.6■□□□□ 0.25
NKX3-1-201ENST00000380871 UBXN11Q5T124 520 aa16.6■□□□□ 0.25
NKX3-1-201ENST00000380871 LRRC52Q8N7C0 313 aa16.6■□□□□ 0.25
NKX3-1-201ENST00000380871 RNF148Q8N7C7 305 aa16.6■□□□□ 0.25
NKX3-1-201ENST00000380871 B3GALNT2Q8NCR0 500 aa16.6■□□□□ 0.25
NKX3-1-201ENST00000380871 EDEM1Q92611 657 aa16.6■□□□□ 0.25
NKX3-1-201ENST00000380871 LENG8Q96PV6 779 aaPredicted RBP16.6■□□□□ 0.25
NKX3-1-201ENST00000380871 APOL2Q9BQE5 337 aa16.6■□□□□ 0.25
NKX3-1-201ENST00000380871 GNEQ9Y223 722 aaKnown RBP16.6■□□□□ 0.25
NKX3-1-201ENST00000380871 SNX10Q9Y5X0 201 aa16.6■□□□□ 0.25
NKX3-1-201ENST00000380871 AIM2O14862 343 aa16.6■□□□□ 0.25
NKX3-1-201ENST00000380871 UQCRBP14927 111 aa16.6■□□□□ 0.25
NKX3-1-201ENST00000380871 ITGA7Q13683 1181 aa16.6■□□□□ 0.25
NKX3-1-201ENST00000380871 TTC39CQ8N584 583 aa16.6■□□□□ 0.25
NKX3-1-201ENST00000380871 CENPIQ92674 756 aaPredicted RBP16.6■□□□□ 0.25
NKX3-1-201ENST00000380871 CERS2Q96G23 380 aa16.6■□□□□ 0.25
NKX3-1-201ENST00000380871 ZNF560Q96MR9 790 aa16.6■□□□□ 0.25
NKX3-1-201ENST00000380871 PAAF1Q9BRP4 392 aa16.6■□□□□ 0.25
NKX3-1-201ENST00000380871 PRDM12Q9H4Q4 367 aa16.6■□□□□ 0.25
NKX3-1-201ENST00000380871 RTN3O95197 1032 aaPredicted RBP16.6■□□□□ 0.25
NKX3-1-201ENST00000380871 HSPA4LO95757 839 aa16.6■□□□□ 0.25
NKX3-1-201ENST00000380871 ZNF865P0CJ78 1059 aaPredicted RBP16.6■□□□□ 0.25
NKX3-1-201ENST00000380871 PTPN9P43378 593 aa16.6■□□□□ 0.25
NKX3-1-201ENST00000380871 HARS2P49590 506 aaKnown RBP16.6■□□□□ 0.25
NKX3-1-201ENST00000380871 FSCN1Q16658 493 aaKnown RBP16.6■□□□□ 0.25
NKX3-1-201ENST00000380871 FBXW8Q8N3Y1 598 aa16.6■□□□□ 0.25
NKX3-1-201ENST00000380871 SMG8Q8ND04 991 aaKnown RBP16.6■□□□□ 0.25
NKX3-1-201ENST00000380871 SLC7A14Q8TBB6 771 aa16.6■□□□□ 0.25
NKX3-1-201ENST00000380871 ZNF669Q96BR6 464 aaPredicted RBP16.6■□□□□ 0.25
NKX3-1-201ENST00000380871 CMTM5Q96DZ9 223 aa16.6■□□□□ 0.25
NKX3-1-201ENST00000380871 ETAA1Q9NY74 926 aa16.6■□□□□ 0.25
NKX3-1-201ENST00000380871 PIRO00625 290 aa16.59■□□□□ 0.25
NKX3-1-201ENST00000380871 ATP5BP06576 529 aaKnown RBP16.59■□□□□ 0.25
NKX3-1-201ENST00000380871 NUMBP49757 651 aa16.59■□□□□ 0.25
NKX3-1-201ENST00000380871 KLF10Q13118 480 aa16.59■□□□□ 0.25
NKX3-1-201ENST00000380871 PPP2R5DQ14738 602 aa16.59■□□□□ 0.25
NKX3-1-201ENST00000380871 STXBP5Q5T5C0 1151 aa16.59■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 127.4 ms